[bcf653] | 1 | /*
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| 2 | * Project: MoleCuilder
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| 3 | * Description: creates and alters molecular systems
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[0aa122] | 4 | * Copyright (C) 2010-2012 University of Bonn. All rights reserved.
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[bcf653] | 5 | * Please see the LICENSE file or "Copyright notice" in builder.cpp for details.
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| 6 | */
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| 7 |
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[d74077] | 8 | /*
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| 9 | * BoundaryPolygonSet.cpp
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| 10 | *
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| 11 | * Created on: Jul 29, 2010
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| 12 | * Author: heber
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| 13 | */
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| 14 |
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[bf3817] | 15 | // include config.h
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| 16 | #ifdef HAVE_CONFIG_H
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| 17 | #include <config.h>
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| 18 | #endif
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| 19 |
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[ad011c] | 20 | #include "CodePatterns/MemDebug.hpp"
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[bbbad5] | 21 |
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[d74077] | 22 | #include "BoundaryPolygonSet.hpp"
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| 23 |
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| 24 | #include <iostream>
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| 25 |
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| 26 | #include "BoundaryLineSet.hpp"
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| 27 | #include "BoundaryPointSet.hpp"
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| 28 | #include "BoundaryTriangleSet.hpp"
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[6f0841] | 29 | #include "Atom/TesselPoint.hpp"
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[d74077] | 30 |
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[ad011c] | 31 | #include "CodePatterns/Assert.hpp"
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| 32 | #include "CodePatterns/Info.hpp"
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| 33 | #include "CodePatterns/Log.hpp"
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[255829] | 34 | #include "CodePatterns/Verbose.hpp"
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| 35 | #include "Helpers/helpers.hpp"
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[8f4df1] | 36 | #include "LinearAlgebra/Plane.hpp"
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| 37 | #include "LinearAlgebra/Vector.hpp"
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[d74077] | 38 |
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| 39 | using namespace std;
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| 40 |
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| 41 | /** Constructor for BoundaryPolygonSet.
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| 42 | */
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| 43 | BoundaryPolygonSet::BoundaryPolygonSet() :
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| 44 | Nr(-1)
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| 45 | {
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| 46 | Info FunctionInfo(__func__);
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| 47 | }
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| 48 | ;
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| 49 |
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| 50 | /** Destructor of BoundaryPolygonSet.
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| 51 | * Just clears endpoints.
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| 52 | * \note When removing triangles from a class Tesselation, use RemoveTesselationTriangle()
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| 53 | */
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| 54 | BoundaryPolygonSet::~BoundaryPolygonSet()
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| 55 | {
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| 56 | Info FunctionInfo(__func__);
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| 57 | endpoints.clear();
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[47d041] | 58 | LOG(1, "Erasing polygon Nr." << Nr << " itself.");
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[d74077] | 59 | }
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| 60 | ;
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| 61 |
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| 62 | /** Calculates the normal vector for this triangle.
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| 63 | * Is made unique by comparison with \a OtherVector to point in the other direction.
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| 64 | * \param &OtherVector direction vector to make normal vector unique.
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| 65 | * \return allocated vector in normal direction
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| 66 | */
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| 67 | Vector * BoundaryPolygonSet::GetNormalVector(const Vector &OtherVector) const
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| 68 | {
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| 69 | Info FunctionInfo(__func__);
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| 70 | // get normal vector
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| 71 | Vector TemporaryNormal;
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| 72 | Vector *TotalNormal = new Vector;
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| 73 | PointSet::const_iterator Runner[3];
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| 74 | for (int i = 0; i < 3; i++) {
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| 75 | Runner[i] = endpoints.begin();
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| 76 | for (int j = 0; j < i; j++) { // go as much further
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| 77 | Runner[i]++;
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| 78 | if (Runner[i] == endpoints.end()) {
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[47d041] | 79 | ELOG(0, "There are less than three endpoints in the polygon!");
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[d74077] | 80 | performCriticalExit();
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| 81 | }
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| 82 | }
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| 83 | }
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| 84 | TotalNormal->Zero();
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| 85 | int counter = 0;
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| 86 | for (; Runner[2] != endpoints.end();) {
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| 87 | TemporaryNormal = Plane(((*Runner[0])->node->getPosition()),
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| 88 | ((*Runner[1])->node->getPosition()),
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| 89 | ((*Runner[2])->node->getPosition())).getNormal();
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| 90 | for (int i = 0; i < 3; i++) // increase each of them
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| 91 | Runner[i]++;
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| 92 | (*TotalNormal) += TemporaryNormal;
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| 93 | }
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| 94 | TotalNormal->Scale(1. / (double) counter);
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| 95 |
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| 96 | // make it always point inward (any offset vector onto plane projected onto normal vector suffices)
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| 97 | if (TotalNormal->ScalarProduct(OtherVector) > 0.)
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| 98 | TotalNormal->Scale(-1.);
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[47d041] | 99 | LOG(1, "Normal Vector is " << *TotalNormal << ".");
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[d74077] | 100 |
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| 101 | return TotalNormal;
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| 102 | }
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| 103 | ;
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| 104 |
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| 105 | /** Calculates the center point of the triangle.
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| 106 | * Is third of the sum of all endpoints.
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| 107 | * \param *center central point on return.
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| 108 | */
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| 109 | void BoundaryPolygonSet::GetCenter(Vector * const center) const
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| 110 | {
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| 111 | Info FunctionInfo(__func__);
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| 112 | center->Zero();
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| 113 | int counter = 0;
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| 114 | for(PointSet::const_iterator Runner = endpoints.begin(); Runner != endpoints.end(); Runner++) {
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| 115 | (*center) += ((*Runner)->node->getPosition());
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| 116 | counter++;
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| 117 | }
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| 118 | center->Scale(1. / (double) counter);
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[47d041] | 119 | LOG(1, "Center is at " << *center << ".");
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[d74077] | 120 | }
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| 121 |
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| 122 | /** Checks whether the polygons contains all three endpoints of the triangle.
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| 123 | * \param *triangle triangle to test
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| 124 | * \return true - triangle is contained polygon, false - is not
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| 125 | */
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| 126 | bool BoundaryPolygonSet::ContainsBoundaryTriangle(const BoundaryTriangleSet * const triangle) const
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| 127 | {
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| 128 | Info FunctionInfo(__func__);
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| 129 | return ContainsPresentTupel(triangle->endpoints, 3);
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| 130 | }
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| 131 | ;
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| 132 |
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| 133 | /** Checks whether the polygons contains both endpoints of the line.
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| 134 | * \param *line line to test
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| 135 | * \return true - line is of the triangle, false - is not
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| 136 | */
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| 137 | bool BoundaryPolygonSet::ContainsBoundaryLine(const BoundaryLineSet * const line) const
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| 138 | {
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| 139 | Info FunctionInfo(__func__);
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| 140 | return ContainsPresentTupel(line->endpoints, 2);
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| 141 | }
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| 142 | ;
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| 143 |
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| 144 | /** Checks whether point is any of the three endpoints this triangle contains.
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| 145 | * \param *point point to test
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| 146 | * \return true - point is of the triangle, false - is not
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| 147 | */
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| 148 | bool BoundaryPolygonSet::ContainsBoundaryPoint(const BoundaryPointSet * const point) const
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| 149 | {
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| 150 | Info FunctionInfo(__func__);
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| 151 | for (PointSet::const_iterator Runner = endpoints.begin(); Runner != endpoints.end(); Runner++) {
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[47d041] | 152 | LOG(0, "Checking against " << **Runner);
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[d74077] | 153 | if (point == (*Runner)) {
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[47d041] | 154 | LOG(0, " Contained.");
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[d74077] | 155 | return true;
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| 156 | }
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| 157 | }
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[47d041] | 158 | LOG(0, " Not contained.");
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[d74077] | 159 | return false;
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| 160 | }
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| 161 | ;
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| 162 |
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| 163 | /** Checks whether point is any of the three endpoints this triangle contains.
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| 164 | * \param *point TesselPoint to test
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| 165 | * \return true - point is of the triangle, false - is not
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| 166 | */
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| 167 | bool BoundaryPolygonSet::ContainsBoundaryPoint(const TesselPoint * const point) const
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| 168 | {
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| 169 | Info FunctionInfo(__func__);
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| 170 | for (PointSet::const_iterator Runner = endpoints.begin(); Runner != endpoints.end(); Runner++)
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| 171 | if (point == (*Runner)->node) {
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[47d041] | 172 | LOG(0, " Contained.");
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[d74077] | 173 | return true;
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| 174 | }
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[47d041] | 175 | LOG(0, " Not contained.");
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[d74077] | 176 | return false;
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| 177 | }
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| 178 | ;
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| 179 |
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| 180 | /** Checks whether given array of \a *Points coincide with polygons's endpoints.
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| 181 | * \param **Points pointer to an array of BoundaryPointSet
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| 182 | * \param dim dimension of array
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| 183 | * \return true - set of points is contained in polygon, false - is not
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| 184 | */
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| 185 | bool BoundaryPolygonSet::ContainsPresentTupel(const BoundaryPointSet * const * Points, const int dim) const
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| 186 | {
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| 187 | Info FunctionInfo(__func__);
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| 188 | int counter = 0;
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[47d041] | 189 | LOG(1, "Polygon is " << *this);
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[d74077] | 190 | for (int i = 0; i < dim; i++) {
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[47d041] | 191 | LOG(1, " Testing endpoint " << *Points[i]);
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[d74077] | 192 | if (ContainsBoundaryPoint(Points[i])) {
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| 193 | counter++;
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| 194 | }
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| 195 | }
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| 196 |
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| 197 | if (counter == dim)
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| 198 | return true;
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| 199 | else
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| 200 | return false;
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| 201 | }
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| 202 | ;
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| 203 |
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| 204 | /** Checks whether given PointList coincide with polygons's endpoints.
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| 205 | * \param &endpoints PointList
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| 206 | * \return true - set of points is contained in polygon, false - is not
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| 207 | */
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| 208 | bool BoundaryPolygonSet::ContainsPresentTupel(const PointSet &endpoints) const
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| 209 | {
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| 210 | Info FunctionInfo(__func__);
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| 211 | size_t counter = 0;
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[47d041] | 212 | LOG(1, "Polygon is " << *this);
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[d74077] | 213 | for (PointSet::const_iterator Runner = endpoints.begin(); Runner != endpoints.end(); Runner++) {
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[47d041] | 214 | LOG(1, " Testing endpoint " << **Runner);
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[d74077] | 215 | if (ContainsBoundaryPoint(*Runner))
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| 216 | counter++;
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| 217 | }
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| 218 |
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| 219 | if (counter == endpoints.size())
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| 220 | return true;
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| 221 | else
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| 222 | return false;
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| 223 | }
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| 224 | ;
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| 225 |
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| 226 | /** Checks whether given set of \a *Points coincide with polygons's endpoints.
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| 227 | * \param *P pointer to BoundaryPolygonSet
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| 228 | * \return true - is the very triangle, false - is not
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| 229 | */
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| 230 | bool BoundaryPolygonSet::ContainsPresentTupel(const BoundaryPolygonSet * const P) const
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| 231 | {
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| 232 | return ContainsPresentTupel((const PointSet) P->endpoints);
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| 233 | }
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| 234 | ;
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| 235 |
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| 236 | /** Gathers all the endpoints' triangles in a unique set.
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| 237 | * \return set of all triangles
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| 238 | */
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| 239 | TriangleSet * BoundaryPolygonSet::GetAllContainedTrianglesFromEndpoints() const
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| 240 | {
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| 241 | Info FunctionInfo(__func__);
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| 242 | pair<TriangleSet::iterator, bool> Tester;
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| 243 | TriangleSet *triangles = new TriangleSet;
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| 244 |
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| 245 | for (PointSet::const_iterator Runner = endpoints.begin(); Runner != endpoints.end(); Runner++)
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| 246 | for (LineMap::const_iterator Walker = (*Runner)->lines.begin(); Walker != (*Runner)->lines.end(); Walker++)
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| 247 | for (TriangleMap::const_iterator Sprinter = (Walker->second)->triangles.begin(); Sprinter != (Walker->second)->triangles.end(); Sprinter++) {
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[47d041] | 248 | //LOG(0, " Testing triangle " << *(Sprinter->second));
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[d74077] | 249 | if (ContainsBoundaryTriangle(Sprinter->second)) {
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| 250 | Tester = triangles->insert(Sprinter->second);
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| 251 | if (Tester.second)
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[47d041] | 252 | LOG(0, "Adding triangle " << *(Sprinter->second));
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[d74077] | 253 | }
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| 254 | }
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| 255 |
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[47d041] | 256 | LOG(1, "The Polygon of " << endpoints.size() << " endpoints has " << triangles->size() << " unique triangles in total.");
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[d74077] | 257 | return triangles;
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| 258 | }
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| 259 | ;
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| 260 |
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| 261 | /** Fills the endpoints of this polygon from the triangles attached to \a *line.
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| 262 | * \param *line lines with triangles attached
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| 263 | * \return true - polygon contains endpoints, false - line was NULL
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| 264 | */
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| 265 | bool BoundaryPolygonSet::FillPolygonFromTrianglesOfLine(const BoundaryLineSet * const line)
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| 266 | {
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| 267 | Info FunctionInfo(__func__);
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| 268 | pair<PointSet::iterator, bool> Tester;
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| 269 | if (line == NULL)
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| 270 | return false;
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[47d041] | 271 | LOG(1, "Filling polygon from line " << *line);
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[d74077] | 272 | for (TriangleMap::const_iterator Runner = line->triangles.begin(); Runner != line->triangles.end(); Runner++) {
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| 273 | for (int i = 0; i < 3; i++) {
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| 274 | Tester = endpoints.insert((Runner->second)->endpoints[i]);
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| 275 | if (Tester.second)
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[47d041] | 276 | LOG(1, " Inserting endpoint " << *((Runner->second)->endpoints[i]));
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[d74077] | 277 | }
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| 278 | }
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| 279 |
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| 280 | return true;
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| 281 | }
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| 282 | ;
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| 283 |
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| 284 | /** output operator for BoundaryPolygonSet.
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| 285 | * \param &ost output stream
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| 286 | * \param &a boundary polygon
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| 287 | */
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| 288 | ostream &operator <<(ostream &ost, const BoundaryPolygonSet &a)
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| 289 | {
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| 290 | ost << "[" << a.Nr << "|";
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| 291 | for (PointSet::const_iterator Runner = a.endpoints.begin(); Runner != a.endpoints.end();) {
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| 292 | ost << (*Runner)->node->getName();
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| 293 | Runner++;
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| 294 | if (Runner != a.endpoints.end())
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| 295 | ost << ",";
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| 296 | }
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| 297 | ost << "]";
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| 298 | return ost;
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| 299 | }
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| 300 | ;
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| 301 |
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