1 | /*
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2 | * Project: MoleCuilder
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3 | * Description: creates and alters molecular systems
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4 | * Copyright (C) 2010-2012 University of Bonn. All rights reserved.
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5 | *
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6 | *
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7 | * This file is part of MoleCuilder.
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8 | *
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9 | * MoleCuilder is free software: you can redistribute it and/or modify
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10 | * it under the terms of the GNU General Public License as published by
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11 | * the Free Software Foundation, either version 2 of the License, or
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12 | * (at your option) any later version.
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13 | *
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14 | * MoleCuilder is distributed in the hope that it will be useful,
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15 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
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16 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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17 | * GNU General Public License for more details.
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18 | *
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19 | * You should have received a copy of the GNU General Public License
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20 | * along with MoleCuilder. If not, see <http://www.gnu.org/licenses/>.
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21 | */
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22 |
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23 | /*
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24 | * BoundaryPolygonSet.cpp
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25 | *
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26 | * Created on: Jul 29, 2010
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27 | * Author: heber
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28 | */
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29 |
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30 | // include config.h
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31 | #ifdef HAVE_CONFIG_H
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32 | #include <config.h>
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33 | #endif
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34 |
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35 | //#include "CodePatterns/MemDebug.hpp"
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36 |
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37 | #include "BoundaryPolygonSet.hpp"
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38 |
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39 | #include <iostream>
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40 |
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41 | #include "BoundaryLineSet.hpp"
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42 | #include "BoundaryPointSet.hpp"
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43 | #include "BoundaryTriangleSet.hpp"
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44 | #include "Atom/TesselPoint.hpp"
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45 |
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46 | #include "CodePatterns/Assert.hpp"
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47 | #include "CodePatterns/Info.hpp"
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48 | #include "CodePatterns/Log.hpp"
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49 | #include "CodePatterns/Verbose.hpp"
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50 | #include "Helpers/helpers.hpp"
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51 | #include "LinearAlgebra/Plane.hpp"
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52 | #include "LinearAlgebra/Vector.hpp"
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53 |
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54 | using namespace std;
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55 |
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56 | /** Constructor for BoundaryPolygonSet.
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57 | */
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58 | BoundaryPolygonSet::BoundaryPolygonSet() :
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59 | Nr(-1)
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60 | {
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61 | //Info FunctionInfo(__func__);
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62 | }
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63 | ;
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64 |
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65 | /** Destructor of BoundaryPolygonSet.
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66 | * Just clears endpoints.
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67 | * \note When removing triangles from a class Tesselation, use RemoveTesselationTriangle()
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68 | */
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69 | BoundaryPolygonSet::~BoundaryPolygonSet()
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70 | {
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71 | //Info FunctionInfo(__func__);
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72 | endpoints.clear();
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73 | LOG(5, "DEBUG: Erasing polygon Nr." << Nr << " itself.");
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74 | }
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75 | ;
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76 |
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77 | /** Calculates the normal vector for this triangle.
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78 | * Is made unique by comparison with \a OtherVector to point in the other direction.
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79 | * \param &OtherVector direction vector to make normal vector unique.
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80 | * \return allocated vector in normal direction
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81 | */
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82 | Vector * BoundaryPolygonSet::GetNormalVector(const Vector &OtherVector) const
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83 | {
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84 | //Info FunctionInfo(__func__);
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85 | // get normal vector
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86 | Vector TemporaryNormal;
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87 | Vector *TotalNormal = new Vector;
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88 | PointSet::const_iterator Runner[3];
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89 | for (int i = 0; i < 3; i++) {
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90 | Runner[i] = endpoints.begin();
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91 | for (int j = 0; j < i; j++) { // go as much further
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92 | Runner[i]++;
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93 | if (Runner[i] == endpoints.end()) {
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94 | ELOG(0, "There are less than three endpoints in the polygon!");
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95 | performCriticalExit();
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96 | }
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97 | }
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98 | }
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99 | TotalNormal->Zero();
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100 | int counter = 0;
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101 | for (; Runner[2] != endpoints.end();) {
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102 | TemporaryNormal = Plane(((*Runner[0])->node->getPosition()),
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103 | ((*Runner[1])->node->getPosition()),
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104 | ((*Runner[2])->node->getPosition())).getNormal();
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105 | for (int i = 0; i < 3; i++) // increase each of them
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106 | Runner[i]++;
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107 | (*TotalNormal) += TemporaryNormal;
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108 | }
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109 | if (counter != 0.)
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110 | TotalNormal->Scale(1. / (double) counter);
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111 |
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112 | // make it always point inward (any offset vector onto plane projected onto normal vector suffices)
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113 | if (TotalNormal->ScalarProduct(OtherVector) > 0.)
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114 | TotalNormal->Scale(-1.);
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115 | LOG(4, "DEBUG: Normal Vector is " << *TotalNormal << ".");
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116 |
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117 | return TotalNormal;
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118 | }
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119 | ;
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120 |
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121 | /** Calculates the center point of the triangle.
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122 | * Is third of the sum of all endpoints.
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123 | * \param *center central point on return.
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124 | */
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125 | void BoundaryPolygonSet::GetCenter(Vector * const center) const
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126 | {
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127 | //Info FunctionInfo(__func__);
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128 | center->Zero();
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129 | int counter = 0;
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130 | for(PointSet::const_iterator Runner = endpoints.begin(); Runner != endpoints.end(); Runner++) {
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131 | (*center) += ((*Runner)->node->getPosition());
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132 | counter++;
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133 | }
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134 | center->Scale(1. / (double) counter);
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135 | LOG(4, "DEBUG: Center of BoundaryPolygonSet is at " << *center << ".");
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136 | }
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137 |
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138 | /** Checks whether the polygons contains all three endpoints of the triangle.
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139 | * \param *triangle triangle to test
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140 | * \return true - triangle is contained polygon, false - is not
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141 | */
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142 | bool BoundaryPolygonSet::ContainsBoundaryTriangle(const BoundaryTriangleSet * const triangle) const
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143 | {
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144 | //Info FunctionInfo(__func__);
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145 | return ContainsPresentTupel(triangle->endpoints, 3);
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146 | }
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147 | ;
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148 |
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149 | /** Checks whether the polygons contains both endpoints of the line.
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150 | * \param *line line to test
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151 | * \return true - line is of the triangle, false - is not
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152 | */
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153 | bool BoundaryPolygonSet::ContainsBoundaryLine(const BoundaryLineSet * const line) const
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154 | {
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155 | //Info FunctionInfo(__func__);
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156 | return ContainsPresentTupel(line->endpoints, 2);
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157 | }
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158 | ;
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159 |
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160 | /** Checks whether point is any of the three endpoints this triangle contains.
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161 | * \param *point point to test
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162 | * \return true - point is of the triangle, false - is not
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163 | */
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164 | bool BoundaryPolygonSet::ContainsBoundaryPoint(const BoundaryPointSet * const point) const
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165 | {
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166 | //Info FunctionInfo(__func__);
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167 | for (PointSet::const_iterator Runner = endpoints.begin(); Runner != endpoints.end(); Runner++) {
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168 | if (point == (*Runner)) {
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169 | LOG(4, "DEBUG: Checking against " << **Runner << ": Contained.");
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170 | return true;
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171 | }
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172 | }
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173 | return false;
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174 | }
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175 | ;
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176 |
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177 | /** Checks whether point is any of the three endpoints this triangle contains.
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178 | * \param *point TesselPoint to test
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179 | * \return true - point is of the triangle, false - is not
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180 | */
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181 | bool BoundaryPolygonSet::ContainsBoundaryPoint(const TesselPoint * const point) const
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182 | {
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183 | //Info FunctionInfo(__func__);
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184 | for (PointSet::const_iterator Runner = endpoints.begin(); Runner != endpoints.end(); Runner++)
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185 | if (point == (*Runner)->node) {
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186 | LOG(4, "DEBUG: Checking against " << **Runner << ": Contained.");
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187 | return true;
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188 | }
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189 | return false;
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190 | }
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191 | ;
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192 |
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193 | /** Checks whether given array of \a *Points coincide with polygons's endpoints.
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194 | * \param **Points pointer to an array of BoundaryPointSet
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195 | * \param dim dimension of array
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196 | * \return true - set of points is contained in polygon, false - is not
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197 | */
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198 | bool BoundaryPolygonSet::ContainsPresentTupel(const BoundaryPointSet * const * Points, const int dim) const
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199 | {
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200 | //Info FunctionInfo(__func__);
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201 | int counter = 0;
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202 | LOG(5, "DEBUG Polygon is " << *this);
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203 | for (int i = 0; i < dim; i++) {
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204 | LOG(5, "DEBUG: Testing endpoint " << *Points[i]);
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205 | if (ContainsBoundaryPoint(Points[i])) {
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206 | counter++;
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207 | }
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208 | }
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209 |
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210 | if (counter == dim)
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211 | return true;
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212 | else
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213 | return false;
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214 | }
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215 | ;
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216 |
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217 | /** Checks whether given PointList coincide with polygons's endpoints.
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218 | * \param &endpoints PointList
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219 | * \return true - set of points is contained in polygon, false - is not
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220 | */
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221 | bool BoundaryPolygonSet::ContainsPresentTupel(const PointSet &endpoints) const
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222 | {
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223 | //Info FunctionInfo(__func__);
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224 | size_t counter = 0;
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225 | LOG(5, "DEBUG: Polygon is " << *this);
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226 | for (PointSet::const_iterator Runner = endpoints.begin(); Runner != endpoints.end(); Runner++) {
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227 | LOG(5, "DEBUG: Testing endpoint " << **Runner);
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228 | if (ContainsBoundaryPoint(*Runner))
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229 | counter++;
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230 | }
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231 |
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232 | if (counter == endpoints.size())
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233 | return true;
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234 | else
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235 | return false;
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236 | }
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237 | ;
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238 |
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239 | /** Checks whether given set of \a *Points coincide with polygons's endpoints.
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240 | * \param *P pointer to BoundaryPolygonSet
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241 | * \return true - is the very triangle, false - is not
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242 | */
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243 | bool BoundaryPolygonSet::ContainsPresentTupel(const BoundaryPolygonSet * const P) const
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244 | {
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245 | return ContainsPresentTupel((const PointSet) P->endpoints);
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246 | }
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247 | ;
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248 |
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249 | /** Gathers all the endpoints' triangles in a unique set.
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250 | * \return set of all triangles
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251 | */
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252 | TriangleSet * BoundaryPolygonSet::GetAllContainedTrianglesFromEndpoints() const
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253 | {
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254 | //Info FunctionInfo(__func__);
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255 | pair<TriangleSet::iterator, bool> Tester;
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256 | TriangleSet *triangles = new TriangleSet;
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257 |
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258 | for (PointSet::const_iterator Runner = endpoints.begin(); Runner != endpoints.end(); Runner++)
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259 | for (LineMap::const_iterator Walker = (*Runner)->lines.begin(); Walker != (*Runner)->lines.end(); Walker++)
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260 | for (TriangleMap::const_iterator Sprinter = (Walker->second)->triangles.begin(); Sprinter != (Walker->second)->triangles.end(); Sprinter++) {
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261 | //LOG(0, " Testing triangle " << *(Sprinter->second));
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262 | if (ContainsBoundaryTriangle(Sprinter->second)) {
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263 | Tester = triangles->insert(Sprinter->second);
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264 | if (Tester.second)
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265 | LOG(4, "DEBUG: Adding triangle " << *(Sprinter->second));
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266 | }
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267 | }
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268 |
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269 | LOG(3, "DEBUG: The Polygon of " << endpoints.size() << " endpoints has " << triangles->size() << " unique triangles in total.");
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270 | return triangles;
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271 | }
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272 | ;
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273 |
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274 | /** Fills the endpoints of this polygon from the triangles attached to \a *line.
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275 | * \param *line lines with triangles attached
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276 | * \return true - polygon contains endpoints, false - line was NULL
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277 | */
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278 | bool BoundaryPolygonSet::FillPolygonFromTrianglesOfLine(const BoundaryLineSet * const line)
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279 | {
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280 | //Info FunctionInfo(__func__);
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281 | pair<PointSet::iterator, bool> Tester;
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282 | if (line == NULL)
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283 | return false;
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284 | LOG(3, "DEBUG: Filling polygon from line " << *line);
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285 | for (TriangleMap::const_iterator Runner = line->triangles.begin(); Runner != line->triangles.end(); Runner++) {
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286 | for (int i = 0; i < 3; i++) {
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287 | Tester = endpoints.insert((Runner->second)->endpoints[i]);
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288 | if (Tester.second)
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289 | LOG(4, "DEBUG: Inserting endpoint " << *((Runner->second)->endpoints[i]));
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290 | }
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291 | }
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292 |
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293 | return true;
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294 | }
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295 | ;
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296 |
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297 | /** output operator for BoundaryPolygonSet.
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298 | * \param &ost output stream
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299 | * \param &a boundary polygon
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300 | */
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301 | ostream &operator <<(ostream &ost, const BoundaryPolygonSet &a)
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302 | {
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303 | ost << "[" << a.Nr << "|";
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304 | for (PointSet::const_iterator Runner = a.endpoints.begin(); Runner != a.endpoints.end();) {
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305 | ost << (*Runner)->node->getName();
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306 | Runner++;
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307 | if (Runner != a.endpoints.end())
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308 | ost << ",";
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309 | }
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310 | ost << "]";
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311 | return ost;
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312 | }
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313 | ;
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314 |
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