Changeset f01769 for src/Fragmentation/Homology/HomologyGraph_getFromKeyset.cpp

Timestamp:

Jul 24, 2015, 4:44:34 PM (10 years ago)

Author:

Frederik Heber <heber@…>

Branches:

Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable

Children:

a58c16

Parents:

1259df

git-author:

Frederik Heber <heber@…> (06/01/15 16:57:36)

git-committer:

Frederik Heber <heber@…> (07/24/15 16:44:34)

Message:

Replaced World::getAtom() wherever possible by const version.

• some AtomSet member functions now have const atom ptr instead of atom ptr.
• molecule can return const and non-const AtomSet.
• added FromIdToConstAtom to allow iterate through atoms in molecule (which are stored by id, not by ptr) in const fashion.
• in molecule::isInMolecule() is now const, ::CopyMolecule..() is non-const (because copying involves father atom who is stored non-const).

File:

• src/Fragmentation/Homology/HomologyGraph_getFromKeyset.cpp (modified) (3 diffs)

src/Fragmentation/Homology/HomologyGraph_getFromKeyset.cpp

@@ -59 +59 @@
       iter != keyset.end(); ++iter) {
 //    LOG(2, "DEBUG: Current global id is " << *iter << ".");
-    const atom *Walker = World::getInstance().getAtom(AtomById(*iter));
+    const atom * const Walker = const_cast<const World &>(World::getInstance()).
+        getAtom(AtomById(*iter));
     if (Walker != NULL) {
       size_t NoBonds = 0;
@@ -65 +66 @@
       for (BondList::const_iterator bonditer = ListOfBonds.begin();
           bonditer != ListOfBonds.end(); ++bonditer) {
-        const atom *OtherWalker = (*bonditer)->GetOtherAtom(Walker);
+        const atom * const OtherWalker = (*bonditer)->GetOtherAtom(Walker);
         if (keyset.count(OtherWalker->getId()))
           ++NoBonds;
@@ -89 +90 @@
       iter != keyset.end(); ++iter) {
 //    LOG(2, "DEBUG: Current global id is " << *iter << ".");
-    const atom *Walker = World::getInstance().getAtom(AtomById(*iter));
+    const atom * const Walker = const_cast<const World &>(World::getInstance()).
+        getAtom(AtomById(*iter));
     if (Walker != NULL) {
       const BondList& ListOfBonds = Walker->getListOfBonds();
       for (BondList::const_iterator bonditer = ListOfBonds.begin();
           bonditer != ListOfBonds.end(); ++bonditer) {
-        const atom *OtherWalker = (*bonditer)->GetOtherAtom(Walker);
+        const atom * const OtherWalker = (*bonditer)->GetOtherAtom(Walker);
 //        LOG(2, "DEBUG: Neighbor is " << OtherWalker->getId() << ".");
         if ((keyset.count(OtherWalker->getId())) && (Walker->getId() < OtherWalker->getId())) {