Ignore:
Timestamp:
Mar 11, 2010, 2:46:41 PM (16 years ago)
Author:
Tillmann Crueger <crueger@…>
Branches:
Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, Candidate_v1.7.0, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable
Children:
68d781
Parents:
a77c96 (diff), ed58ad (diff)
Note: this is a merge changeset, the changes displayed below correspond to the merge itself.
Use the (diff) links above to see all the changes relative to each parent.
Message:

Merge branch 'StructureRefactoring' into QT4Refactoring

Conflicts:

molecuilder/src/builder.cpp
molecuilder/src/defs.hpp

File:
1 edited

Legend:

Unmodified
Added
Removed
  • src/unittests/AtomDescriptorTest.cpp

    ra77c96 rcd032d  
    2929// set up and tear down
    3030void AtomDescriptorTest::setUp(){
    31   World::get();
     31  World::getInstance();
    3232  for(int i=0;i<ATOM_COUNT;++i){
    33     atoms[i]= World::get()->createAtom();
     33    atoms[i]= World::getInstance().createAtom();
    3434    atomIds[i]= atoms[i]->getId();
    3535  }
     
    3737
    3838void AtomDescriptorTest::tearDown(){
    39   World::destroy();
     39  World::purgeInstance();
    4040}
    4141
     
    7373
    7474void AtomDescriptorTest::AtomBaseSetsTest(){
    75   std::vector<atom*> allAtoms = World::get()->getAllAtoms(AllAtoms());
     75  std::vector<atom*> allAtoms = World::getInstance().getAllAtoms(AllAtoms());
    7676  CPPUNIT_ASSERT_EQUAL( true , hasAllAtoms(allAtoms,atomIds));
    7777  CPPUNIT_ASSERT_EQUAL( true , hasNoDuplicateAtoms(allAtoms));
    7878
    79   std::vector<atom*> noAtoms = World::get()->getAllAtoms(NoAtoms());
     79  std::vector<atom*> noAtoms = World::getInstance().getAllAtoms(NoAtoms());
    8080  CPPUNIT_ASSERT_EQUAL( true , noAtoms.empty());
    8181}
     
    8383  // test Atoms from boundaries and middle of the set
    8484  atom* testAtom;
    85   testAtom = World::get()->getAtom(AtomById(atomIds[0]));
     85  testAtom = World::getInstance().getAtom(AtomById(atomIds[0]));
    8686  CPPUNIT_ASSERT(testAtom);
    8787  CPPUNIT_ASSERT_EQUAL( atomIds[0], testAtom->getId());
    88   testAtom = World::get()->getAtom(AtomById(atomIds[ATOM_COUNT/2]));
     88  testAtom = World::getInstance().getAtom(AtomById(atomIds[ATOM_COUNT/2]));
    8989  CPPUNIT_ASSERT(testAtom);
    9090  CPPUNIT_ASSERT_EQUAL( atomIds[ATOM_COUNT/2], testAtom->getId());
    91   testAtom = World::get()->getAtom(AtomById(atomIds[ATOM_COUNT-1]));
     91  testAtom = World::getInstance().getAtom(AtomById(atomIds[ATOM_COUNT-1]));
    9292  CPPUNIT_ASSERT(testAtom);
    9393  CPPUNIT_ASSERT_EQUAL( atomIds[ATOM_COUNT-1], testAtom->getId());
     
    103103  }
    104104  // test from outside of set
    105   testAtom = World::get()->getAtom(AtomById(outsideId));
     105  testAtom = World::getInstance().getAtom(AtomById(outsideId));
    106106  CPPUNIT_ASSERT(!testAtom);
    107107}
     
    109109  // test some elementary set operations
    110110  {
    111     std::vector<atom*> testAtoms = World::get()->getAllAtoms(AllAtoms()||NoAtoms());
     111    std::vector<atom*> testAtoms = World::getInstance().getAllAtoms(AllAtoms()||NoAtoms());
    112112    CPPUNIT_ASSERT_EQUAL( true , hasAllAtoms(testAtoms,atomIds));
    113113    CPPUNIT_ASSERT_EQUAL( true , hasNoDuplicateAtoms(testAtoms));
     
    115115
    116116  {
    117     std::vector<atom*> testAtoms = World::get()->getAllAtoms(NoAtoms()||AllAtoms());
     117    std::vector<atom*> testAtoms = World::getInstance().getAllAtoms(NoAtoms()||AllAtoms());
    118118    CPPUNIT_ASSERT_EQUAL( true , hasAllAtoms(testAtoms,atomIds));
    119119    CPPUNIT_ASSERT_EQUAL( true , hasNoDuplicateAtoms(testAtoms));
     
    121121
    122122  {
    123     std::vector<atom*> testAtoms = World::get()->getAllAtoms(NoAtoms()&&AllAtoms());
     123    std::vector<atom*> testAtoms = World::getInstance().getAllAtoms(NoAtoms()&&AllAtoms());
    124124    CPPUNIT_ASSERT_EQUAL( true , testAtoms.empty());
    125125  }
    126126
    127127  {
    128     std::vector<atom*> testAtoms = World::get()->getAllAtoms(AllAtoms()&&NoAtoms());
     128    std::vector<atom*> testAtoms = World::getInstance().getAllAtoms(AllAtoms()&&NoAtoms());
    129129    CPPUNIT_ASSERT_EQUAL( true , testAtoms.empty());
    130130  }
    131131
    132132  {
    133     std::vector<atom*> testAtoms = World::get()->getAllAtoms(!AllAtoms());
     133    std::vector<atom*> testAtoms = World::getInstance().getAllAtoms(!AllAtoms());
    134134    CPPUNIT_ASSERT_EQUAL( true , testAtoms.empty());
    135135  }
    136136
    137137  {
    138     std::vector<atom*> testAtoms = World::get()->getAllAtoms(!NoAtoms());
     138    std::vector<atom*> testAtoms = World::getInstance().getAllAtoms(!NoAtoms());
    139139    CPPUNIT_ASSERT_EQUAL( true , hasAllAtoms(testAtoms,atomIds));
    140140    CPPUNIT_ASSERT_EQUAL( true , hasNoDuplicateAtoms(testAtoms));
     
    143143  // exclude and include some atoms
    144144  {
    145     std::vector<atom*> testAtoms = World::get()->getAllAtoms(AllAtoms()&&(!AtomById(atomIds[ATOM_COUNT/2])));
     145    std::vector<atom*> testAtoms = World::getInstance().getAllAtoms(AllAtoms()&&(!AtomById(atomIds[ATOM_COUNT/2])));
    146146    std::set<atomId_t> excluded;
    147147    excluded.insert(atomIds[ATOM_COUNT/2]);
     
    152152
    153153  {
    154     std::vector<atom*> testAtoms = World::get()->getAllAtoms(NoAtoms()||(AtomById(atomIds[ATOM_COUNT/2])));
     154    std::vector<atom*> testAtoms = World::getInstance().getAllAtoms(NoAtoms()||(AtomById(atomIds[ATOM_COUNT/2])));
    155155    CPPUNIT_ASSERT_EQUAL( (size_t)1, testAtoms.size());
    156156    CPPUNIT_ASSERT_EQUAL( atomIds[ATOM_COUNT/2], testAtoms[0]->getId());
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