Changeset cd032d for src/moleculelist.cpp

Timestamp:

Mar 11, 2010, 2:46:41 PM (16 years ago)

Author:

Tillmann Crueger <crueger@…>

Branches:

Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, Candidate_v1.7.0, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable

Children:

68d781

Parents:

a77c96 (diff), ed58ad (diff)
Note: this is a merge changeset, the changes displayed below correspond to the merge itself.
Use the (diff) links above to see all the changes relative to each parent.

Message:

Merge branch 'StructureRefactoring' into QT4Refactoring

Conflicts:

molecuilder/src/builder.cpp
molecuilder/src/defs.hpp

File:

• src/moleculelist.cpp (modified) (8 diffs)

src/moleculelist.cpp

@@ -215 +215 @@
   // remove src
   ListOfMolecules.remove(srcmol);
-  World::get()->destroyMolecule(srcmol);
+  World::getInstance().destroyMolecule(srcmol);
   return true;
 };
@@ -750 +750 @@
 void MoleculeListClass::DissectMoleculeIntoConnectedSubgraphs(const periodentafel * const periode, config * const configuration)
 {
-  molecule *mol = World::get()->createMolecule();
+  molecule *mol = World::getInstance().createMolecule();
   atom *Walker = NULL;
   atom *Advancer = NULL;
@@ -775 +775 @@
     }
     // remove the molecule
-    World::get()->destroyMolecule(*MolRunner);
+    World::getInstance().destroyMolecule(*MolRunner);
     ListOfMolecules.erase(MolRunner);
   }
@@ -797 +797 @@
   molecule **molecules = Malloc<molecule *>(MolCount, "config::Load() - **molecules");
   for (int i=0;i<MolCount;i++) {
-    molecules[i] = World::get()->createMolecule();
+    molecules[i] = World::getInstance().createMolecule();
     molecules[i]->ActiveFlag = true;
     strncpy(molecules[i]->name, mol->name, MAXSTRINGSIZE);
@@ -895 +895 @@
   OBSERVE;
   molecule *mol = NULL;
-  mol = World::get()->createMolecule();
+  mol = World::getInstance().createMolecule();
   insert(mol);
 };
@@ -904 +904 @@
   char filename[MAXSTRINGSIZE];
   Log() << Verbose(0) << "Format should be XYZ with: ShorthandOfElement\tX\tY\tZ" << endl;
-  mol = World::get()->createMolecule();
+  mol = World::getInstance().createMolecule();
   do {
     Log() << Verbose(0) << "Enter file name: ";
@@ -962 +962 @@
       mol = *ListRunner;
       ListOfMolecules.erase(ListRunner);
-      World::get()->destroyMolecule(mol);
+      World::getInstance().destroyMolecule(mol);
       break;
     }
@@ -1009 +1009 @@
   // remove the leaf itself
   if (Leaf != NULL) {
-    World::get()->destroyMolecule(Leaf);
+    World::getInstance().destroyMolecule(Leaf);
     Leaf = NULL;
   }