Ignore:
Timestamp:
May 20, 2014, 9:14:56 AM (11 years ago)
Author:
Frederik Heber <heber@…>
Branches:
Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable
Children:
6029a6
Parents:
74459a
git-author:
Frederik Heber <heber@…> (03/20/14 17:23:35)
git-committer:
Frederik Heber <heber@…> (05/20/14 09:14:56)
Message:

Enhanced documentation significantly.

  • went through all of the constructs and updated each.
  • enhanced documentation ofr Fragmentation::FragmentMolecule().
File:
1 edited

Legend:

Unmodified
Added
Removed
  • src/documentation/userinterfaces/commandline.dox

    r74459a rcaece4  
    2020 * forward way.
    2121 *
    22  * Commands are parsed via the CommandLineParser with uses boost::program_options
     22 * Commands are parsed via the CommandLineParser which uses boost::program_options
    2323 * to recognize the given options. ActionRegistry and OptionRegistry are used
    24  * to distinguish Option's from Action's. A specific type per option is expected
    25  * and the ValueStorage assures that only the correct type is parsed.
     24 * to distinguish Option's from Action's. Each option has a specific type and a
     25 * Validator ascertains that the value associated with this option and of this
     26 * specific type matches certain criteria.
    2627 *
    2728 * So far the sequence of the Option's is not really important but for the
    2829 * Action's the ordering counts: first come, first serve.
    2930 *
    30  * Undoing is possible as well. But is so far only used in the regression test
    31  * to test its functionality. This will become more usefull when the
    32  * ActionHistory is stored to file and past session can be re-enacted by loading
    33  * simply it. Their undo would allow for traversing back in this history.
     31 * Undoing is possible from the command-line as well. But is so far only used in
     32 * the regression test to test its functionality. However, as the ActionHistory,
     33 * or rather ActionQueue, can be saved as a session, this is useful as in a restored
     34 * ActionHistory undo would allow for traversing back in this history.
    3435 *
    3536 *
    36  * \date 2011-10-31
     37 * \date 2014-03-10
    3738 *
    3839 */
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