Ignore:
Timestamp:
Aug 9, 2010, 6:33:29 PM (15 years ago)
Author:
Frederik Heber <heber@…>
Branches:
Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable
Children:
353e82
Parents:
458447 (diff), e588312 (diff)
Note: this is a merge changeset, the changes displayed below correspond to the merge itself.
Use the (diff) links above to see all the changes relative to each parent.
Message:

Merge branch 'StructureRefactoring' into stable

Conflicts:

src/Actions/AtomAction/AddAction.cpp
src/Actions/AtomAction/ChangeElementAction.cpp
src/Parser/XyzParser.cpp
src/analysis_correlation.cpp
src/atom.cpp
src/config.cpp
src/molecule.cpp

  • AtomInfo::element were privatized in stable and element::symbol, ::name in StructureRefactoring (overlapped in various lines).
File:
1 edited

Legend:

Unmodified
Added
Removed
  • src/Actions/MapOfActions.hpp

    r458447 rb5c53d  
    164164
    165165  void queryCurrentValue(const char * name, class atom * &_T);
    166   void queryCurrentValue(const char * name, class element * &_T);
     166  void queryCurrentValue(const char * name, const element * &_T);
    167167  void queryCurrentValue(const char * name, class molecule * &_T);
    168168  void queryCurrentValue(const char * name, class Box &_T);
    169169  void queryCurrentValue(const char * name, class Vector &_T);
    170170  void queryCurrentValue(const char * name, std::vector<atom *>&_T);
    171   void queryCurrentValue(const char * name, std::vector<element *>&_T);
     171  void queryCurrentValue(const char * name, std::vector<const element *>&_T);
    172172  void queryCurrentValue(const char * name, std::vector<molecule *>&_T);
    173173  template<typename T> void queryCurrentValue(const char * name, T &_T)
     
    198198
    199199  void setCurrentValue(const char * name, class atom * &_T);
    200   void setCurrentValue(const char * name, class element * &_T);
     200  void setCurrentValue(const char * name, const element * &_T);
    201201  void setCurrentValue(const char * name, class molecule * &_T);
    202202  void setCurrentValue(const char * name, class Box &_T);
    203203  void setCurrentValue(const char * name, class Vector &_T);
    204204  void setCurrentValue(const char * name, std::vector<atom *>&_T);
    205   void setCurrentValue(const char * name, std::vector<element *>&_T);
     205  void setCurrentValue(const char * name, std::vector<const element *>&_T);
    206206  void setCurrentValue(const char * name, std::vector<molecule *>&_T);
    207207  template<class T> void setCurrentValue(const char * name, T &_T)
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