Ignore:
Timestamp:
Oct 19, 2014, 5:10:16 PM (11 years ago)
Author:
Frederik Heber <heber@…>
Branches:
Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable
Children:
5c8807
Parents:
9e1bfb (diff), 46ce1c (diff)
Note: this is a merge changeset, the changes displayed below correspond to the merge itself.
Use the (diff) links above to see all the changes relative to each parent.
Message:

Merge branch 'DynamicMolecules' into Candidate_v1.4.9

File:
1 edited

Legend:

Unmodified
Added
Removed
  • src/Actions/UndoRedoHelpers.cpp

    r9e1bfb rb119a0  
    181181}
    182182
    183 void MoleCuilder::removeLastStep(const std::vector<atomId_t> &_atoms)
     183void MoleCuilder::removeLastStep(const std::vector<atomId_t> &_atoms, const unsigned int _step)
    184184{
    185185  for (size_t i=0; i<_atoms.size(); ++i) {
    186186    atom * const _atom = World::getInstance().getAtom(AtomById(_atoms[i]));
    187     _atom->removeSteps();
    188   }
    189 }
    190 
    191 void MoleCuilder::addNewStep(const std::vector<AtomicInfo> &_movedatoms)
     187    _atom->removeStep(_step);
     188  }
     189}
     190
     191void MoleCuilder::addNewStep(const std::vector<AtomicInfo> &_movedatoms, const unsigned int _step)
    192192{
    193193  for(size_t i=0; i< _movedatoms.size(); ++i) {
    194194    atom * const _atom = World::getInstance().getAtom(AtomById(_movedatoms[i].getId()));
    195     _atom->UpdateSteps();
    196   }
    197 }
    198 
    199 void MoleCuilder::addNewStep(const std::vector<atomId_t> &_ids)
     195    _atom->UpdateStep(_step);
     196  }
     197}
     198
     199void MoleCuilder::addNewStep(const std::vector<atomId_t> &_ids, const unsigned int _step)
    200200{
    201201  for(size_t i=0; i< _ids.size(); ++i) {
    202202    atom * const _atom = World::getInstance().getAtom(AtomById(_ids[i]));
    203     _atom->UpdateSteps();
     203    _atom->UpdateStep(_step);
    204204  }
    205205}
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