Changeset 607eab for src/bondgraph.hpp
- Timestamp:
- Mar 1, 2011, 1:17:09 PM (14 years ago)
- Branches:
- Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable
- Children:
- 632508
- Parents:
- cff66c
- git-author:
- Frederik Heber <heber@…> (02/28/11 16:06:03)
- git-committer:
- Frederik Heber <heber@…> (03/01/11 13:17:09)
- File:
-
- 1 edited
Legend:
- Unmodified
- Added
- Removed
-
src/bondgraph.hpp
rcff66c r607eab 92 92 otheriter != PresentElements.end(); 93 93 ++otheriter) { 94 range<double> MinMaxDistance(0.,0.); 95 getMinMaxDistance((*iter),(*otheriter), MinMaxDistance); 94 const range<double> MinMaxDistance(getMinMaxDistance((*iter),(*otheriter))); 96 95 if (MinMaxDistance.last > max_distance) 97 96 max_distance = MinMaxDistance.last; … … 105 104 * \param *Walker first BondedParticle 106 105 * \param *OtherWalker second BondedParticle 107 * \ param &MinMaxDistance Range for interval on return108 */ 109 voidgetMinMaxDistance(106 * \return Range with bond interval 107 */ 108 range<double> getMinMaxDistance( 110 109 const BondedParticle * const Walker, 111 const BondedParticle * const OtherWalker, 112 range<double> &MinMaxDistance) const; 110 const BondedParticle * const OtherWalker) const; 113 111 114 112 /** Returns SQUARED bond criterion for given pair based on a bond length matrix. … … 117 115 * \param *Walker first BondedParticle 118 116 * \param *OtherWalker second BondedParticle 119 * \ param &MinMaxDistance Range for interval on return120 */ 121 voidgetMinMaxDistanceSquared(117 * \return Range with bond interval 118 */ 119 range<double> getMinMaxDistanceSquared( 122 120 const BondedParticle * const Walker, 123 const BondedParticle * const OtherWalker, 124 range<double> &MinMaxDistance) const; 121 const BondedParticle * const OtherWalker) const; 125 122 126 123 /** Creates the adjacency list for a given \a Range of iterable atoms. … … 319 316 * \param *Walker first BondedParticle 320 317 * \param *OtherWalker second BondedParticle 321 * \ param &MinMaxDistance Range for interval on return322 */ 323 voidgetMinMaxDistance(318 * \return Range with bond interval 319 */ 320 range<double> getMinMaxDistance( 324 321 const element * const Walker, 325 const element * const OtherWalker, 326 range<double> &MinMaxDistance) const; 322 const element * const OtherWalker) const; 327 323 328 324 /** Returns bond criterion for given pair of elements based on a bond length matrix. … … 331 327 * \param *Walker first element 332 328 * \param *OtherWalker second element 333 * @param MinMaxDistance reference to range type set on return334 */ 335 voidBondLengthMatrixMinMaxDistance(329 * \return Range with bond interval 330 */ 331 range<double> BondLengthMatrixMinMaxDistance( 336 332 const element * const Walker, 337 const element * const OtherWalker, 338 range<double> &MinMaxDistance) const; 333 const element * const OtherWalker) const; 339 334 340 335 /** Returns bond criterion for given pair of elements based on covalent radius. 341 336 * \param *Walker first element 342 337 * \param *OtherWalker second element 343 * @param MinMaxDistance reference to range type set on return344 */ 345 voidCovalentMinMaxDistance(338 * \return Range with bond interval 339 */ 340 range<double> CovalentMinMaxDistance( 346 341 const element * const Walker, 347 const element * const OtherWalker, 348 range<double> &MinMaxDistance) const; 342 const element * const OtherWalker) const; 349 343 350 344
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