Changeset 4777e9 for src/builder.cpp
- Timestamp:
- Jul 9, 2009, 10:31:05 AM (15 years ago)
- Branches:
- Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable
- Children:
- 70c333f
- Parents:
- 542ab3
- File:
-
- 1 edited
Legend:
- Unmodified
- Added
- Removed
-
src/builder.cpp
r542ab3 r4777e9 628 628 static void ManipulateAtoms(periodentafel *periode, MoleculeListClass *molecules, config *configuration) 629 629 { 630 atom *first, *second, *third, *fourth; 631 Vector **atoms; 630 atom *first, *second; 632 631 molecule *mol = NULL; 633 632 Vector x,y,z,n; // coordinates for absolute point in cell volume 634 633 double *factor; // unit factor if desired 635 double a,b,c;636 634 double bond, min_bond; 637 635 char choice; // menu choice char … … 743 741 static void ManipulateMolecules(periodentafel *periode, MoleculeListClass *molecules, config *configuration) 744 742 { 745 atom *first, *second, *third, *fourth; 746 Vector **atoms; 743 atom *first = NULL; 747 744 Vector x,y,z,n; // coordinates for absolute point in cell volume 748 double a,b,c;749 745 int j, axis, count, faktor; 750 746 char choice; // menu choice char 751 bool valid;752 747 molecule *mol = NULL; 753 748 element **Elements; … … 900 895 { 901 896 char choice; // menu choice char 902 bool valid;903 897 Vector Center; 904 898 int nr, count; 905 899 molecule *mol = NULL; 906 char *molname = NULL;907 int length;908 900 char filename[MAXSTRINGSIZE]; 909 901 … … 1008 1000 { 1009 1001 char choice; // menu choice char 1010 bool valid;1011 1002 1012 1003 cout << Verbose(0) << "===========MERGE MOLECULES=====================" << endl; … … 1485 1476 } else { 1486 1477 class Tesselation T; 1487 int N = 15;1488 int number = 100;1489 1478 string filename(argv[argptr+1]); 1490 1479 filename.append(".csv"); … … 1799 1788 molecule *mol = NULL; 1800 1789 config configuration; 1801 double tmp1;1802 atom *first, *second;1803 1790 char choice; // menu choice char 1804 1791 Vector x,y,z,n; // coordinates for absolute point in cell volume 1805 bool valid; // flag if input was valid or not1806 1792 ifstream test; 1807 1793 ofstream output; … … 1809 1795 char *ConfigFileName = NULL; 1810 1796 char *ElementsFileName = NULL; 1811 int Z; 1812 int j, axis, count, faktor; 1797 int j, count; 1813 1798 1814 1799 // =========================== PARSE COMMAND LINE OPTIONS ====================================
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