Ignore:
Timestamp:
Oct 20, 2011, 10:42:16 PM (14 years ago)
Author:
Frederik Heber <heber@…>
Branches:
Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, Candidate_v1.7.0, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable
Children:
f94953
Parents:
fa9d1d (diff), 752bb4 (diff)
Note: this is a merge changeset, the changes displayed below correspond to the merge itself.
Use the (diff) links above to see all the changes relative to each parent.
git-author:
Frederik Heber <heber@…> (10/20/11 22:40:59)
git-committer:
Frederik Heber <heber@…> (10/20/11 22:42:16)
Message:

Merge branch 'Adding_Psi3Parser' into stable

Conflicts:

src/Parser/FormatParser.hpp
src/Parser/unittests/ParserTremoloUnitTest.cpp

Issues:

  • Element and periodentafel have been moved to folder src/Element.
File:
1 edited

Legend:

Unmodified
Added
Removed
  • src/Parser/FormatParserStorage.hpp

    rfa9d1d r360c8b  
    1616#include "CodePatterns/Singleton.hpp"
    1717
     18#include <iosfwd>
     19#include <map>
    1820#include <string>
    19 #include <map>
    2021#include <vector>
    2122
    22 #include "Parser/FormatParser.hpp"
    23 #include "Parser/MpqcParser.hpp"
    24 #include "Parser/PcpParser.hpp"
    25 #include "Parser/PdbParser.hpp"
    26 #include "Parser/TremoloParser.hpp"
    27 #include "Parser/XyzParser.hpp"
     23#include "CodePatterns/Assert.hpp"
     24#include "CodePatterns/Log.hpp"
     25#include "FormatParser.hpp"
     26#include "ParserTypes.hpp"
    2827
    2928class atom;
    30 
    31 // enum has to be outside of class for operator++ to be possible
    32 enum ParserTypes { mpqc, pcp, pdb, tremolo, xyz, ParserTypes_end, ParserTypes_begin = mpqc };
    33 typedef enum ParserTypes ParserTypes;
    34 
    35 ParserTypes &operator++(ParserTypes &type);
     29class FormatParserInterface;
    3630
    3731class FormatParserStorage : public Singleton<FormatParserStorage> {
     
    3933public:
    4034
    41   void addMpqc();
    42   void addPcp();
    43   void addPdb();
    44   void addTremolo();
    45   void addXyz();
    4635  bool add(std::string type);
    4736  bool add(ParserTypes type);
     
    5241  bool saveSelectedMolecules(std::ostream &output, std::string suffix);
    5342  bool saveWorld(std::ostream &output, std::string suffix);
    54   MpqcParser &getMpqc();
    55   PcpParser &getPcp();
    56   PdbParser &getPdb();
    57   TremoloParser &getTremolo();
    58   XyzParser &getXyz();
    59   FormatParser &get(enum ParserTypes _type);
     43 
     44  FormatParserInterface &get(ParserTypes _type);
    6045
    6146  ParserTypes getTypeFromName(std::string type);
     
    7156 
    7257  // list of allocated parsers
    73   std::vector<FormatParser *> ParserList;
     58  std::vector<FormatParserInterface *> ParserList;
    7459
    7560  // list of allocated strams
     
    9075  std::map<std::string, ParserTypes> ParserLookupNames;
    9176
    92 
    9377  // prefix of the filenames to use on save
    9478  std::string prefix;
     79
     80public:
     81  template<ParserTypes Ptype> void addParser()
     82  {
     83    if (!ParserPresent[Ptype]) {
     84      ParserList[Ptype] = new FormatParser<Ptype>();
     85      ParserPresent[Ptype] = true;
     86    } else {
     87      ASSERT(ParserNames.find(Ptype) != ParserNames.end(),
     88          "FormatParserStorage::addParser() - ParserNames unknown for type"+toString((size_t)Ptype)+".");
     89      ASSERT(ParserSuffixes.find(Ptype) != ParserSuffixes.end(),
     90          "FormatParserStorage::addParser() - ParserSuffixes unknown for type"+toString((size_t)Ptype)+".");
     91      LOG(2, "INFO: Parser " << ParserNames[Ptype] << " is already present." << std::endl
     92          << "Note that you don't need to add '-o "
     93          << ParserSuffixes[Ptype] << "' if the input file is non-empty and of type "
     94          << ParserSuffixes[Ptype] << "." << std::endl);
     95    }
     96  }
     97
     98  template<ParserTypes Ptype> FormatParser<Ptype> &getParser()
     99  {
     100    if(!ParserPresent[Ptype])
     101      addParser< Ptype >();
     102    return dynamic_cast<FormatParser<Ptype> &>(*ParserList[Ptype]);
     103  }
    95104};
    96105
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