Changeset 23b547 for src/molecule.cpp
- Timestamp:
- Mar 10, 2010, 5:51:48 PM (15 years ago)
- Branches:
- Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable
- Children:
- d7940e
- Parents:
- 31af19
- File:
-
- 1 edited
Legend:
- Unmodified
- Added
- Removed
-
src/molecule.cpp
r31af19 r23b547 31 31 * Initialises molecule list with correctly referenced start and end, and sets molecule::last_atom to zero. 32 32 */ 33 molecule::molecule(const periodentafel * const teil) : elemente(teil), start(World::get ()->createAtom()), end(World::get()->createAtom()),33 molecule::molecule(const periodentafel * const teil) : elemente(teil), start(World::getInstance().createAtom()), end(World::getInstance().createAtom()), 34 34 first(new bond(start, end, 1, -1)), last(new bond(start, end, 1, -1)), MDSteps(0), AtomCount(0), 35 35 BondCount(0), ElementCount(0), NoNonHydrogen(0), NoNonBonds(0), NoCyclicBonds(0), BondDistance(0.), … … 56 56 57 57 molecule *NewMolecule(){ 58 return new molecule(World::get ()->getPeriode());58 return new molecule(World::getInstance().getPeriode()); 59 59 } 60 60 … … 261 261 switch(TopBond->BondDegree) { 262 262 case 1: 263 FirstOtherAtom = World::get ()->createAtom(); // new atom263 FirstOtherAtom = World::getInstance().createAtom(); // new atom 264 264 FirstOtherAtom->type = elemente->FindElement(1); // element is Hydrogen 265 265 FirstOtherAtom->v.CopyVector(&TopReplacement->v); // copy velocity … … 318 318 319 319 // create the two Hydrogens ... 320 FirstOtherAtom = World::get ()->createAtom();321 SecondOtherAtom = World::get ()->createAtom();320 FirstOtherAtom = World::getInstance().createAtom(); 321 SecondOtherAtom = World::getInstance().createAtom(); 322 322 FirstOtherAtom->type = elemente->FindElement(1); 323 323 SecondOtherAtom->type = elemente->FindElement(1); … … 373 373 case 3: 374 374 // take the "usual" tetraoidal angle and add the three Hydrogen in direction of the bond (height of the tetraoid) 375 FirstOtherAtom = World::get ()->createAtom();376 SecondOtherAtom = World::get ()->createAtom();377 ThirdOtherAtom = World::get ()->createAtom();375 FirstOtherAtom = World::getInstance().createAtom(); 376 SecondOtherAtom = World::getInstance().createAtom(); 377 ThirdOtherAtom = World::getInstance().createAtom(); 378 378 FirstOtherAtom->type = elemente->FindElement(1); 379 379 SecondOtherAtom->type = elemente->FindElement(1); … … 494 494 MDSteps++; 495 495 for(i=0;i<NumberOfAtoms;i++){ 496 Walker = World::get ()->createAtom();496 Walker = World::getInstance().createAtom(); 497 497 getline(xyzfile,line,'\n'); 498 498 istringstream *item = new istringstream(line);
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