Changeset 1fd675 for src/Actions/ParserAction/LoadXyzAction.cpp
- Timestamp:
- Aug 28, 2010, 12:57:56 AM (15 years ago)
- Branches:
- Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable
- Children:
- 966e12
- Parents:
- 53d01c
- git-author:
- Frederik Heber <heber@…> (08/26/10 21:05:34)
- git-committer:
- Frederik Heber <heber@…> (08/28/10 00:57:56)
- File:
-
- 1 edited
Legend:
- Unmodified
- Added
- Removed
-
src/Actions/ParserAction/LoadXyzAction.cpp
r53d01c r1fd675 20 20 #include "Helpers/MemDebug.hpp" 21 21 22 #include "Helpers/Log.hpp" 23 #include "Helpers/Verbose.hpp" 24 #include "Parser/XyzParser.hpp" 25 26 #include <iostream> 27 22 28 using namespace std; 23 29 24 30 #include "Actions/ParserAction/LoadXyzAction.hpp" 25 #include "Actions/ActionRegistry.hpp"26 #include "Parser/XyzParser.hpp"27 #include "atom.hpp"28 #include "Helpers/Log.hpp"29 #include "molecule.hpp"30 #include "Helpers/Verbose.hpp"31 #include "World.hpp"32 31 33 #include <iostream> 34 #include <set> 35 #include <string> 36 #include <vector> 37 38 #include "UIElements/UIFactory.hpp" 39 #include "UIElements/Dialog.hpp" 40 #include "Actions/ValueStorage.hpp" 41 42 /****** ParserLoadXyzAction *****/ 43 44 //// memento to remember the state when undoing 45 // 46 //class ParserLoadXyzState : public ActionState { 47 //public: 48 // ParserLoadXyzState(molecule* _mol,std::string _lastName) : 49 // mol(_mol), 50 // lastName(_lastName) 51 // {} 52 // molecule* mol; 53 // std::string lastName; 54 //}; 55 56 const char ParserLoadXyzAction::NAME[] = "parse-xyz"; 57 58 ParserLoadXyzAction::ParserLoadXyzAction() : 59 Action(NAME) 60 {} 61 62 ParserLoadXyzAction::~ParserLoadXyzAction() 63 {} 64 65 void ParserLoadXyz(std::string &filename) { 66 ValueStorage::getInstance().setCurrentValue(ParserLoadXyzAction::NAME, filename); 67 ActionRegistry::getInstance().getActionByName(ParserLoadXyzAction::NAME)->call(Action::NonInteractive); 68 }; 69 70 void ParserLoadXyzAction::getParametersfromValueStorage() 71 {}; 72 73 Dialog* ParserLoadXyzAction::fillDialog(Dialog *dialog) { 74 ASSERT(dialog,"No Dialog given when filling action dialog"); 75 76 dialog->queryString(NAME, ValueStorage::getInstance().getDescription(NAME)); 77 78 return dialog; 79 } 80 32 // and construct the stuff 33 #include "LoadXyzAction.def" 34 #include "Action_impl_pre.hpp" 35 /** =========== define the function ====================== */ 81 36 Action::state_ptr ParserLoadXyzAction::performCall() { 82 string filename; 83 84 ValueStorage::getInstance().queryCurrentValue(NAME, filename); 37 // obtain information 38 getParametersfromValueStorage(); 85 39 86 40 DoLog(1) && (Log() << Verbose(1) << "Parsing xyz file for new atoms." << endl); 87 41 // parse xyz file 88 42 ifstream input; 89 input.open( filename.c_str());43 input.open(params.filename.c_str()); 90 44 if (!input.fail()) { 91 45 XyzParser parser; // briefly instantiate a parser which is removed at end of focus 92 46 parser.load(&input); 93 47 } else { 94 DoeLog(1) && (eLog() << Verbose(1) << "Could not open file " << filename << "." << endl);48 DoeLog(1) && (eLog() << Verbose(1) << "Could not open file " << params.filename << "." << endl); 95 49 } 96 50 input.close(); … … 123 77 return NAME; 124 78 } 79 /** =========== end of function ====================== */
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