Ignore:
Timestamp:
Jun 25, 2010, 9:57:15 AM (15 years ago)
Author:
Tillmann Crueger <crueger@…>
Branches:
Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable
Children:
b6dbff
Parents:
ce4487 (diff), 0d1ad0 (diff)
Note: this is a merge changeset, the changes displayed below correspond to the merge itself.
Use the (diff) links above to see all the changes relative to each parent.
Message:

Merge branch 'StructureRefactoring' into QT4Refactoring

Conflicts:

molecuilder/src/Makefile.am
molecuilder/src/builder.cpp

File:
1 edited

Legend:

Unmodified
Added
Removed
  • src/Actions/MapOfActions.cpp

    rce4487 r04488a  
    8383  DescriptionMap["fragment-mol"] = "create for a given molecule into fragments up to given order";
    8484  DescriptionMap["help"] = "Give this help screen";
     85  DescriptionMap["input"] = "specify input files";
    8586  DescriptionMap["linear-interpolate"] = "linear interpolation in discrete steps between start and end position of a molecule";
    8687  DescriptionMap["nonconvex-envelope"] = "create the non-convex envelope for a molecule";
    8788  DescriptionMap["molecular-volume"] = "calculate the volume of a given molecule";
     89  DescriptionMap["output"] = "specify output formats";
    8890  DescriptionMap["pair-correlation"] = "pair correlation analysis between two elements, element and point or element and surface";
    8991  DescriptionMap["parse-xyz"] = "parse xyz file into World";
     
    185187  TypeMap["fastparsing"] = Boolean;
    186188  TypeMap["fill-molecule"] = String;
    187   TypeMap["fragment-mol"] = Molecule;
     189  TypeMap["fragment-mol"] = String;
    188190  TypeMap["input"] = String;
    189191  TypeMap["linear-interpolate"] = String;
    190192  TypeMap["molecular-volume"] = Molecule;
    191193  TypeMap["nonconvex-envelope"] = Molecule;
     194  TypeMap["output"] = String;
    192195  TypeMap["parse-xyz"] = String;
    193196  TypeMap["pair-correlation"] = String;
     
    262265  generic.insert("fragment-mol");
    263266  generic.insert("help");
    264         generic.insert("linear-interpolate");
     267  generic.insert("input");
     268  generic.insert("linear-interpolate");
    265269//  generic.insert("molecular-volume");
    266270  generic.insert("nonconvex-envelope");
     271  generic.insert("output");
    267272        generic.insert("pair-correlation");
    268 //      generic.insert("parse-xyz");
     273        generic.insert("parse-xyz");
    269274//  generic.insert("principal-axis-system");
    270275  generic.insert("remove-atom");
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