Action_Thermostats
Add_AtomRandomPerturbation
Add_FitFragmentPartialChargesAction
Add_RotateAroundBondAction
Add_SelectAtomByNameAction
Adding_Graph_to_ChangeBondActions
Adding_MD_integration_tests
Adding_StructOpt_integration_tests
Automaking_mpqc_open
AutomationFragmentation_failures
Candidate_v1.5.4
Candidate_v1.6.0
Candidate_v1.6.1
ChangeBugEmailaddress
ChangingTestPorts
ChemicalSpaceEvaluator
Combining_Subpackages
Debian_Package_split
Debian_package_split_molecuildergui_only
Disabling_MemDebug
Docu_Python_wait
EmpiricalPotential_contain_HomologyGraph
EmpiricalPotential_contain_HomologyGraph_documentation
Enable_parallel_make_install
Enhance_userguide
Enhanced_StructuralOptimization
Enhanced_StructuralOptimization_continued
Example_ManyWaysToTranslateAtom
Exclude_Hydrogens_annealWithBondGraph
FitPartialCharges_GlobalError
Fix_ChargeSampling_PBC
Fix_ChronosMutex
Fix_FitPartialCharges
Fix_FitPotential_needs_atomicnumbers
Fix_ForceAnnealing
Fix_IndependentFragmentGrids
Fix_ParseParticles
Fix_ParseParticles_split_forward_backward_Actions
Fix_StatusMsg
Fix_StepWorldTime_single_argument
Fix_Verbose_Codepatterns
ForceAnnealing_goodresults
ForceAnnealing_oldresults
ForceAnnealing_tocheck
ForceAnnealing_with_BondGraph
ForceAnnealing_with_BondGraph_continued
ForceAnnealing_with_BondGraph_continued_betteresults
ForceAnnealing_with_BondGraph_contraction-expansion
GeometryObjects
Gui_displays_atomic_force_velocity
IndependentFragmentGrids_IntegrationTest
JobMarket_RobustOnKillsSegFaults
JobMarket_StableWorkerPool
JobMarket_unresolvable_hostname_fix
ODR_violation_mpqc_open
PartialCharges_OrthogonalSummation
PythonUI_with_named_parameters
QtGui_reactivate_TimeChanged_changes
Recreated_GuiChecks
RotateToPrincipalAxisSystem_UndoRedo
StoppableMakroAction
Subpackage_CodePatterns
Subpackage_JobMarket
Subpackage_LinearAlgebra
Subpackage_levmar
Subpackage_mpqc_open
Subpackage_vmg
ThirdParty_MPQC_rebuilt_buildsystem
TrajectoryDependenant_MaxOrder
TremoloParser_IncreasedPrecision
TremoloParser_MultipleTimesteps
Ubuntu_1604_changes
stable
Last change
on this file since 72b467 was 991c35, checked in by Frederik Heber <heber@…>, 10 years ago |
Added tcl scripts for viewing and debugging convexized surfaces.
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File size:
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[991c35] | 1 | #!/usr/bin/tclsh
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| 2 | #
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| 3 | # This scripts parses a series of tecplot style files of triangles and displays them via VMD's graphics interface
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| 4 |
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| 5 | # fname is the filename prefix of the tecplot .dat files, e.g. "convex" for "convex-0.dat"
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| 6 | proc convexizing { fname steps} {
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| 7 | global framesteps
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| 8 | global fileprefix
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| 9 | set framesteps $steps
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| 10 | set fileprefix $fname
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| 11 |
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| 12 | # avoid some 'animate dup' bug
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| 13 | set molid [molinfo top]
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| 14 | if {$steps < 2} {
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| 15 | error "steps should be greater than 2."
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| 16 | }
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| 17 | # make tcount-1 copies of current frame
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| 18 | for {set i 0} {$i <$steps} {incr i} {
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| 19 | animate dup frame 0 $molid
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| 20 | }
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| 21 | animate goto 0
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| 22 |
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| 23 | global vmd_frame
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| 24 | trace variable vmd_frame([molinfo top]) w update_current_surface
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| 25 | display update
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| 26 | return
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| 27 | }
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| 28 |
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| 29 | proc update_current_surface {name index op} {
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| 30 | global fileprefix
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| 31 |
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| 32 | draw delete all
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| 33 | set frame [molinfo $index get frame]
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| 34 | # open file
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| 35 | set fname "$fileprefix-$frame.dat"
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| 36 | #puts "Opening new file $fname."
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| 37 | set file [open $fname r]
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| 38 | gets $file title
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| 39 | gets $file variables
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| 40 | gets $file zone
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| 41 | # parse nodes
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| 42 | set ncount 1
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| 43 | gets $file line
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| 44 | while { $line != {} } {
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| 45 | set nodes($ncount) $line
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| 46 | incr ncount
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| 47 | gets $file line
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| 48 | }
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| 49 | set ncount [ expr $ncount -1 ]
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| 50 | # there's a blank line in between
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| 51 | # parse triangles
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| 52 | set tcount 0
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| 53 | gets $file line
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| 54 | while { $line != {} } {
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| 55 | set triangles [ split $line " "]
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| 56 | set first [ lrange $nodes([ lindex $triangles 0 ]) 0 2 ]
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| 57 | set second [ lrange $nodes([ lindex $triangles 1 ]) 0 2 ]
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| 58 | set third [ lrange $nodes([ lindex $triangles 2 ]) 0 2 ]
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| 59 | draw color blue
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| 60 | draw material Transparent
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| 61 | draw triangle $first $second $third
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| 62 | incr tcount
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| 63 | gets $file line
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| 64 | }
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| 65 | close $file
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| 66 | #puts "There are $tcount triangles."
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| 67 |
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| 68 | return
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| 69 | }
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| 70 |
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| 71 | proc convexizing_off {} {
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| 72 | global vmd_frame
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| 73 | global framesteps
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| 74 | trace vdelete vmd_frame([molinfo top]) w update_current_surface
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| 75 | draw delete all
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| 76 | animate delete beg 1 end $framesteps skip 0 [molinfo top]
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| 77 | return
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| 78 | }
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| 79 |
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