Action_Thermostats
Add_AtomRandomPerturbation
Add_FitFragmentPartialChargesAction
Add_RotateAroundBondAction
Add_SelectAtomByNameAction
Adding_Graph_to_ChangeBondActions
Adding_MD_integration_tests
Adding_StructOpt_integration_tests
Automaking_mpqc_open
AutomationFragmentation_failures
Candidate_v1.5.4
Candidate_v1.6.0
Candidate_v1.6.1
ChangeBugEmailaddress
ChangingTestPorts
ChemicalSpaceEvaluator
Combining_Subpackages
Debian_Package_split
Debian_package_split_molecuildergui_only
Disabling_MemDebug
Docu_Python_wait
EmpiricalPotential_contain_HomologyGraph
EmpiricalPotential_contain_HomologyGraph_documentation
Enable_parallel_make_install
Enhance_userguide
Enhanced_StructuralOptimization
Enhanced_StructuralOptimization_continued
Example_ManyWaysToTranslateAtom
Exclude_Hydrogens_annealWithBondGraph
FitPartialCharges_GlobalError
Fix_ChargeSampling_PBC
Fix_ChronosMutex
Fix_FitPartialCharges
Fix_FitPotential_needs_atomicnumbers
Fix_ForceAnnealing
Fix_IndependentFragmentGrids
Fix_ParseParticles
Fix_ParseParticles_split_forward_backward_Actions
Fix_StatusMsg
Fix_StepWorldTime_single_argument
Fix_Verbose_Codepatterns
ForceAnnealing_goodresults
ForceAnnealing_oldresults
ForceAnnealing_tocheck
ForceAnnealing_with_BondGraph
ForceAnnealing_with_BondGraph_continued
ForceAnnealing_with_BondGraph_continued_betteresults
ForceAnnealing_with_BondGraph_contraction-expansion
GeometryObjects
Gui_displays_atomic_force_velocity
IndependentFragmentGrids_IntegrationTest
JobMarket_RobustOnKillsSegFaults
JobMarket_StableWorkerPool
JobMarket_unresolvable_hostname_fix
ODR_violation_mpqc_open
PartialCharges_OrthogonalSummation
PythonUI_with_named_parameters
QtGui_reactivate_TimeChanged_changes
Recreated_GuiChecks
RotateToPrincipalAxisSystem_UndoRedo
StoppableMakroAction
Subpackage_CodePatterns
Subpackage_JobMarket
Subpackage_LinearAlgebra
Subpackage_levmar
Subpackage_mpqc_open
Subpackage_vmg
ThirdParty_MPQC_rebuilt_buildsystem
TrajectoryDependenant_MaxOrder
TremoloParser_IncreasedPrecision
TremoloParser_MultipleTimesteps
Ubuntu_1604_changes
stable
Last change
on this file since 72b467 was 991c35, checked in by Frederik Heber <heber@…>, 10 years ago |
Added tcl scripts for viewing and debugging convexized surfaces.
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1 | #!/usr/bin/tclsh
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2 | #
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3 | # This scripts parses a series of tecplot style files of triangles and displays them via VMD's graphics interface
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4 |
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5 | # fname is the filename prefix of the tecplot .dat files, e.g. "convex" for "convex-0.dat"
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6 | proc convexizing { fname steps} {
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7 | global framesteps
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8 | global fileprefix
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9 | set framesteps $steps
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10 | set fileprefix $fname
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11 |
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12 | # avoid some 'animate dup' bug
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13 | set molid [molinfo top]
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14 | if {$steps < 2} {
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15 | error "steps should be greater than 2."
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16 | }
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17 | # make tcount-1 copies of current frame
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18 | for {set i 0} {$i <$steps} {incr i} {
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19 | animate dup frame 0 $molid
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20 | }
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21 | animate goto 0
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22 |
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23 | global vmd_frame
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24 | trace variable vmd_frame([molinfo top]) w update_current_surface
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25 | display update
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26 | return
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27 | }
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28 |
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29 | proc update_current_surface {name index op} {
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30 | global fileprefix
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31 |
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32 | draw delete all
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33 | set frame [molinfo $index get frame]
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34 | # open file
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35 | set fname "$fileprefix-$frame.dat"
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36 | #puts "Opening new file $fname."
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37 | set file [open $fname r]
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38 | gets $file title
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39 | gets $file variables
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40 | gets $file zone
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41 | # parse nodes
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42 | set ncount 1
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43 | gets $file line
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44 | while { $line != {} } {
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45 | set nodes($ncount) $line
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46 | incr ncount
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47 | gets $file line
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48 | }
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49 | set ncount [ expr $ncount -1 ]
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50 | # there's a blank line in between
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51 | # parse triangles
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52 | set tcount 0
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53 | gets $file line
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54 | while { $line != {} } {
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55 | set triangles [ split $line " "]
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56 | set first [ lrange $nodes([ lindex $triangles 0 ]) 0 2 ]
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57 | set second [ lrange $nodes([ lindex $triangles 1 ]) 0 2 ]
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58 | set third [ lrange $nodes([ lindex $triangles 2 ]) 0 2 ]
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59 | draw color blue
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60 | draw material Transparent
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61 | draw triangle $first $second $third
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62 | incr tcount
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63 | gets $file line
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64 | }
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65 | close $file
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66 | #puts "There are $tcount triangles."
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67 |
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68 | return
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69 | }
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70 |
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71 | proc convexizing_off {} {
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72 | global vmd_frame
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73 | global framesteps
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74 | trace vdelete vmd_frame([molinfo top]) w update_current_surface
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75 | draw delete all
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76 | animate delete beg 1 end $framesteps skip 0 [molinfo top]
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77 | return
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78 | }
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79 |
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