source: tests/regression/Molecules/testsuite-molecules.at@ 12facf

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since 12facf was f6ba43, checked in by Frederik Heber <heber@…>, 13 years ago

Many smaller changes to CreateMicelleAction to get it fully working and compliant.

Changes to MoleculeCreateMicelleAction::performCall():

  • returns Action::success when no molecule is selected.
  • we check for selection of not more than one molecule.
  • we store full undo (positions in selected molecule and added molecules).
  • new parameter DoRotate to tell whether to mirror molecule along z axis or not.
  • FIX: we rotate to PAS only in case of more than one atom present in molecule.
  • FIX: copied molecules are added to World's MoleculeListClass (and correctly removed in performUndo()).
  • FIX: Placed shifting original molecule into own block and corrected usage of RotationAxis.
  • Also performUndo() is fully implemented.
  • we can... and shouldUndo().
  • added regression test on both do and Undo.
  • Property mode set to 100644
File size: 1.6 KB
Line 
1AT_BANNER([MoleCuilder - Molecules])
2
3# Save selected
4m4_include([Molecules/SaveSelectedMolecules/testsuite-molecules-save-selected-molecules.at])
5
6# Bonds from tremolo dbond file
7m4_include([Molecules/BondFile/testsuite-molecules-tremolo-dbond-file.at])
8
9# Bonds from fragmentation bond file
10m4_include([Molecules/BondFile/testsuite-molecules-fragmentation-bond-file.at])
11
12# copy molecule
13m4_include([Molecules/Copy/testsuite-molecules-copy-molecule.at])
14
15# create micelle
16m4_include([Molecules/CreateMicelle/testsuite-molecules-create-micelle.at])
17
18# Storing adjacency info
19m4_include([Molecules/SaveAdjacency/testsuite-molecules-save-adjacency.at])
20
21# Storing bond info
22m4_include([Molecules/SaveBonds/testsuite-molecules-save-bonds.at])
23
24# Storing temperature
25m4_include([Molecules/SaveTemperature/testsuite-molecules-save-temperature.at])
26
27# linear interpolation
28m4_include([Molecules/LinearInterpolationofTrajectories/testsuite-molecules-linear-interpolation-of-trajectories.at])
29
30# Verlet force integration
31m4_include([Molecules/VerletIntegration/testsuite-molecules-verlet-integration.at])
32
33# Translation
34m4_include([Molecules/Translation/testsuite-molecules-translation.at])
35
36# Translation - Periodic
37m4_include([Molecules/Translation-Periodic/testsuite-molecules-translation-periodic.at])
38
39# Rotate to Principal Axis System
40m4_include([Molecules/RotateToPrincipalAxisSystem/testsuite-molecules-rotate-to-principal-axis-system.at])
41
42# Rotate around origin
43m4_include([Molecules/RotateAroundOrigin/testsuite-molecules-rotate-around-origin.at])
44
45# Rotate around self
46m4_include([Molecules/RotateAroundSelf/testsuite-molecules-rotate-around-self.at])
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