source: tests/regression/Molecules/testsuite-molecules.at

Candidate_v1.6.1
Last change on this file was 3b74fa, checked in by Frederik Heber <frederik.heber@…>, 7 years ago

Rewrite of StretchBondAction to take bondgraph into account.

  • i.e. we now look at the bond graph of the molecule to find all atoms on either side of the bond and shift each set accordingly.
  • this functionality needs to be refactored into a distinct class lateron.
  • TESTS: Added new test case on cyclic bond with benzene.
  • Property mode set to 100644
File size: 2.9 KB
Line 
1#
2# MoleCuilder - creates and alters molecular systems
3# Copyright (C) 2008-2012 University of Bonn
4#
5# This program is free software: you can redistribute it and/or modify
6# it under the terms of the GNU General Public License as published by
7# the Free Software Foundation, either version 3 of the License, or
8# (at your option) any later version.
9#
10# This program is distributed in the hope that it will be useful,
11# but WITHOUT ANY WARRANTY; without even the implied warranty of
12# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
13# GNU General Public License for more details.
14#
15# You should have received a copy of the GNU General Public License
16# along with this program. If not, see <http://www.gnu.org/licenses/>.
17#
18AT_BANNER([MoleCuilder - Molecules])
19
20# Save selected
21m4_include([Molecules/SaveSelectedMolecules/testsuite-molecules-save-selected-molecules.at])
22
23# Bonds from tremolo dbond file
24m4_include([Molecules/BondFile/testsuite-molecules-tremolo-dbond-file.at])
25
26# Bonds from fragmentation bond file
27m4_include([Molecules/BondFile/testsuite-molecules-fragmentation-bond-file.at])
28
29# change bond angle
30m4_include([Molecules/ChangeBondAngle/testsuite-molecules-change-bond-angle.at])
31
32# copy molecule
33m4_include([Molecules/Copy/testsuite-molecules-copy-molecule.at])
34
35# Storing adjacency info
36m4_include([Molecules/SaveAdjacency/testsuite-molecules-save-adjacency.at])
37
38# Storing bond info
39m4_include([Molecules/SaveBonds/testsuite-molecules-save-bonds.at])
40
41# Storing temperature
42m4_include([Molecules/SaveTemperature/testsuite-molecules-save-temperature.at])
43
44# linear interpolation
45m4_include([Molecules/LinearInterpolationofTrajectories/testsuite-molecules-linear-interpolation-of-trajectories.at])
46
47# Verlet force integration
48m4_include([Molecules/VerletIntegration/testsuite-molecules-verlet-integration.at])
49
50# Translation
51m4_include([Molecules/Translation/testsuite-molecules-translation.at])
52
53# Translation - Periodic
54m4_include([Molecules/Translation-Periodic/testsuite-molecules-translation-periodic.at])
55
56# remove whole molecules
57m4_include([Molecules/Remove/testsuite-molecules-remove.at])
58
59# Rotate to Principal Axis System
60m4_include([Molecules/RotateToPrincipalAxisSystem/testsuite-molecules-rotate-to-principal-axis-system.at])
61
62# rotate around one of its bond
63m4_include([Molecules/RotateAroundBond/testsuite-molecules-rotate-around-bond.at])
64
65# Rotate around origin
66m4_include([Molecules/RotateAroundOrigin/testsuite-molecules-rotate-around-origin.at])
67
68# Rotate around self
69m4_include([Molecules/RotateAroundSelf/testsuite-molecules-rotate-around-self.at])
70
71# stretch one of its bond
72m4_include([Molecules/StretchBond/testsuite-molecules-stretch-bond.at])
73m4_include([Molecules/StretchBond/testsuite-molecules-stretch-bond-cyclic_bond.at])
74
75# anneal forces by one step
76m4_include([Molecules/ForceAnnealing/testsuite-molecules-force-annealing.at])
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