source: src/periodentafel.hpp@ 1b62f3

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since 1b62f3 was 68cb0f, checked in by Frederik Heber <heber@…>, 17 years ago

introduced shieldings to analyzer and joiner

both now handle pcp.sigma_all...csv files just as pcp.forces.all. Therefore the data format in pcp/perturbed.c was adapted a bit, as we need a header.
periodentafel.hpp got periodentafel and element class from molecules.hpp

  • Property mode set to 100644
File size: 2.5 KB
Line 
1#ifndef PERIODENTAFEL_HPP_
2#define PERIODENTAFEL_HPP_
3
4using namespace std;
5
6#include "defs.hpp"
7#include "helpers.hpp"
8
9// include config.h
10#ifdef HAVE_CONFIG_H
11#include <config.h>
12#endif
13
14// ====================================== class definitions =========================
15
16class element;
17class periodentafel;
18
19/** Chemical element.
20 * Class incorporates data for a certain chemical element to be referenced from atom class.
21 */
22class element {
23 public:
24 double mass; //!< mass in g/mol
25 double CovalentRadius; //!< covalent radius
26 double VanDerWaalsRadius; //!< can-der-Waals radius
27 int Z; //!< atomic number
28 char name[64]; //!< atom name, i.e. "Hydrogren"
29 char symbol[3]; //!< short form of the atom, i.e. "H"
30 char period[8]; //!< period: n quantum number
31 char group[8]; //!< group: l quantum number
32 char block[8]; //!< block: l quantum number
33 element *previous; //!< previous item in list
34 element *next; //!< next element in list
35 int *sort; //!< sorc criteria
36 int No; //!< number of element set on periodentafel::Output()
37 double Valence; //!< number of valence electrons for this element
38 int NoValenceOrbitals; //!< number of valence orbitals, used for determining bond degree in molecule::CreateConnectmatrix()
39 double HBondDistance[NDIM]; //!< distance in Angstrom of this element to hydrogen (for single, double and triple bonds)
40 double HBondAngle[NDIM]; //!< typical angle for one, two, three bonded hydrogen (in degrees)
41
42 element();
43 ~element();
44
45 //> print element entries to screen
46 bool Output(ofstream *out) const;
47 bool Checkout(ofstream *out, const int No, const int NoOfAtoms) const;
48
49 private:
50};
51
52/** Periodentafel is a list of all elements sorted by their atomic number.
53 */
54class periodentafel {
55 public:
56 element *start; //!< start of element list
57 element *end; //!< end of element list
58 char header1[MAXSTRINGSIZE]; //!< store first header line
59 char header2[MAXSTRINGSIZE]; //!< store second header line
60
61 periodentafel();
62 ~periodentafel();
63
64 bool AddElement(element *pointer);
65 bool RemoveElement(element *pointer);
66 bool CleanupPeriodtable();
67 element * FindElement(int Z);
68 element * FindElement(char *shorthand) const;
69 element * AskElement();
70 bool Output(ofstream *output) const;
71 bool Checkout(ofstream *output, const int *checkliste) const;
72 bool LoadPeriodentafel(char *filename = NULL);
73 bool StorePeriodentafel(char *filename = NULL) const;
74
75 private:
76};
77
78
79#endif /*PERIODENTAFEL_HPP_*/
Note: See TracBrowser for help on using the repository browser.