source: src/parser.hpp@ 1b62f3

Action_Thermostats Add_AtomRandomPerturbation Add_FitFragmentPartialChargesAction Add_RotateAroundBondAction Add_SelectAtomByNameAction Added_ParseSaveFragmentResults AddingActions_SaveParseParticleParameters Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_ParticleName_to_Atom Adding_StructOpt_integration_tests AtomFragments Automaking_mpqc_open AutomationFragmentation_failures Candidate_v1.5.4 Candidate_v1.6.0 Candidate_v1.6.1 ChangeBugEmailaddress ChangingTestPorts ChemicalSpaceEvaluator CombiningParticlePotentialParsing Combining_Subpackages Debian_Package_split Debian_package_split_molecuildergui_only Disabling_MemDebug Docu_Python_wait EmpiricalPotential_contain_HomologyGraph EmpiricalPotential_contain_HomologyGraph_documentation Enable_parallel_make_install Enhance_userguide Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Example_ManyWaysToTranslateAtom Exclude_Hydrogens_annealWithBondGraph FitPartialCharges_GlobalError Fix_BoundInBox_CenterInBox_MoleculeActions Fix_ChargeSampling_PBC Fix_ChronosMutex Fix_FitPartialCharges Fix_FitPotential_needs_atomicnumbers Fix_ForceAnnealing Fix_IndependentFragmentGrids Fix_ParseParticles Fix_ParseParticles_split_forward_backward_Actions Fix_PopActions Fix_QtFragmentList_sorted_selection Fix_Restrictedkeyset_FragmentMolecule Fix_StatusMsg Fix_StepWorldTime_single_argument Fix_Verbose_Codepatterns Fix_fitting_potentials Fixes ForceAnnealing_goodresults ForceAnnealing_oldresults ForceAnnealing_tocheck ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion FragmentAction_writes_AtomFragments FragmentMolecule_checks_bonddegrees GeometryObjects Gui_Fixes Gui_displays_atomic_force_velocity ImplicitCharges IndependentFragmentGrids IndependentFragmentGrids_IndividualZeroInstances IndependentFragmentGrids_IntegrationTest IndependentFragmentGrids_Sole_NN_Calculation JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool JobMarket_unresolvable_hostname_fix MoreRobust_FragmentAutomation ODR_violation_mpqc_open PartialCharges_OrthogonalSummation PdbParser_setsAtomName PythonUI_with_named_parameters QtGui_reactivate_TimeChanged_changes Recreated_GuiChecks Rewrite_FitPartialCharges RotateToPrincipalAxisSystem_UndoRedo SaturateAtoms_findBestMatching SaturateAtoms_singleDegree StoppableMakroAction Subpackage_CodePatterns Subpackage_JobMarket Subpackage_LinearAlgebra Subpackage_levmar Subpackage_mpqc_open Subpackage_vmg Switchable_LogView ThirdParty_MPQC_rebuilt_buildsystem TrajectoryDependenant_MaxOrder TremoloParser_IncreasedPrecision TremoloParser_MultipleTimesteps TremoloParser_setsAtomName Ubuntu_1604_changes stable
Last change on this file since 1b62f3 was 68cb0f, checked in by Frederik Heber <heber@…>, 17 years ago

introduced shieldings to analyzer and joiner

both now handle pcp.sigma_all...csv files just as pcp.forces.all. Therefore the data format in pcp/perturbed.c was adapted a bit, as we need a header.
periodentafel.hpp got periodentafel and element class from molecules.hpp

  • Property mode set to 100644
File size: 3.0 KB
Line 
1/** \file parsing.hpp
2 *
3 * Definitions of various class functions for the parsing of value files.
4 *
5 */
6
7
8#ifndef PARSING_HPP_
9#define PARSING_HPP_
10
11using namespace std;
12
13// include config.h
14#ifdef HAVE_CONFIG_H
15#include <config.h>
16#endif
17
18// ======================================= DEFINES ==========================================
19
20#define EnergySuffix ".energy.all"
21#define ForcesSuffix ".forces.all"
22#define ShieldingSuffix ".sigma_all.csv"
23#define ShieldingPASSuffix ".sigma_all_PAS.csv"
24#define ShieldingFragmentSuffix ".sigma_all_fragment.all"
25#define ShieldingPASFragmentSuffix ".sigma_all_PAS_fragment.all"
26#define TimeSuffix ".speed"
27#define EnergyFragmentSuffix ".energyfragment.all"
28#define ForceFragmentSuffix ".forcefragment.all"
29#define OrderSuffix ".Order"
30
31// ======================================= FUNCTIONS ==========================================
32
33bool FilePresent(const char *filename, bool test);
34bool TestParams(int argc, char **argv);
35
36
37// ======================================= CLASS MatrixContainer =============================
38
39class MatrixContainer {
40 public:
41 double ***Matrix;
42 int **Indices;
43 char *Header;
44 int MatrixCounter;
45 int *RowCounter;
46 int ColumnCounter;
47
48 MatrixContainer();
49 ~MatrixContainer();
50
51 bool ParseMatrix(char *name, char *prefix, string suffix, int skiplines, int skipcolumns);
52 bool AllocateMatrix(char *GivenHeader, int MCounter, int *RCounter, int CCounter);
53 bool ResetMatrix();
54 bool SetLastMatrix(double value, int skipcolumns);
55 bool SetLastMatrix(double **values, int skipcolumns);
56 //bool ParseIndices();
57 //bool SumSubValues();
58 bool SumSubManyBodyTerms(class MatrixContainer &Matrix, class KeySetsContainer &KeySet, int Order);
59 bool WriteTotalFragments(const char *name, const char *prefix);
60 bool WriteLastMatrix(const char *name, const char *prefix, const char *suffix);
61};
62
63// ======================================= CLASS EnergyMatrix =============================
64
65class EnergyMatrix : public MatrixContainer {
66 public:
67 bool ParseIndices();
68 bool SumSubEnergy(class EnergyMatrix &Fragments, class KeySetsContainer &KeySet, int Order);
69};
70
71// ======================================= CLASS ForceMatrix =============================
72
73class ForceMatrix : public MatrixContainer {
74 public:
75 bool ParseIndices(char *name);
76 bool SumSubForces(class ForceMatrix &Fragments, class KeySetsContainer &KeySet, int Order);
77};
78
79// ======================================= CLASS KeySetsContainer =============================
80
81class KeySetsContainer {
82 public:
83 int **KeySets;
84 int *AtomCounter;
85 int FragmentCounter;
86 int Order;
87 int *FragmentsPerOrder;
88 int **OrderSet;
89
90 KeySetsContainer();
91 ~KeySetsContainer();
92
93 bool ParseKeySets(const char *name, const int *ACounter, const int FCounter);
94 bool ParseManyBodyTerms();
95 bool Contains(const int GreaterSet, const int SmallerSet);
96};
97
98// ======================================= END =============================================
99
100#endif /*PARSING_HPP_*/
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