source: src/graph.hpp@ e670e4

/** \file graph.cpp
 * 
 * Function definitions for the class graph.
 * 
 */

#ifndef GRAPH_HPP_
#define GRAPH_HPP_

/*********************************************** includes ***********************************/

// include config.h
#ifdef HAVE_CONFIG_H
#include <config.h>
#endif

// STL headers
#include <deque>
#include <map>
#include <set>
#include <list>

/****************************************** forward declarations *****************************/

class atom;
class bond;
class config;
class molecule;

class SubGraph;
class Node;
class Edge;

/********************************************** definitions *********************************/

typedef std::pair < int, class Node* > NodeMap;
typedef std::multimap < class Node*, class Edge* > EdgeMap;

typedef std::deque<int> KeyStack;
typedef std::set<int> KeySet;
typedef std::pair<int, double> NumberValuePair;

// needed for definition of Graph and GraphTestPair
struct KeyCompare
{
  bool operator() (const KeySet SubgraphA, const KeySet SubgraphB) const;
};

typedef std::map <KeySet, NumberValuePair, KeyCompare > Graph;
typedef std::pair <KeySet, NumberValuePair > GraphPair;
typedef std::pair<KeySet::iterator, bool> KeySetTestPair;
typedef std::pair<Graph::iterator, bool> GraphTestPair;


/******************************** Some small functions and/or structures **********************************/

//bool operator < (KeySet SubgraphA, KeySet SubgraphB);   //note: this declaration is important, otherwise normal < is used (producing wrong order)
void InsertFragmentIntoGraph(struct UniqueFragments *Fragment); // Insert a KeySet into a Graph
void InsertGraphIntoGraph(Graph &graph1, Graph &graph2, int *counter);  // Insert all KeySet's in a Graph into another Graph

/** Structure containing all values in power set combination generation.
 */
struct UniqueFragments {
  typedef std::list<bond*> BondsPerSP;
  typedef std::vector< BondsPerSP > AllSPBonds;

  config *configuration;
  atom *Root;
  Graph *Leaflet;
  KeySet *FragmentSet;
  int ANOVAOrder;
  int FragmentCounter;
  int CurrentIndex;
  double TEFactor;
  int *ShortestPathList;
  bool **UsedList;
  AllSPBonds BondsPerSPList;
  int *BondsPerSPCount;
};

/********************************************** declarations *******************************/

///** Graph class containing the graphs behind molecules.
// */
//class Graph
//{
//      NodeMap ListOfNodes;            //!< tree-list of all nodes in this graph
//      EdgeMap ListOfEdges;            //!< tree-multi-list of all nodes, referenced to node id
//};
//
///** Class describing subgraphs of the Class \a Graph.
// * SubGraph has its own node and edge lists, however also a pointer to its father graph
// * and hence access to its list as well.
// */
//class SubGraph : class Graph
//{
//      class Graph *FatherGraph;               //!< Graph whose subgraph we are
//};
//
///** Class containing the nodes of a graph.
// */
//class Node
//{
//      int     id;                             //!< individual id of the node
//      char *Name;             //!< Name of the node for pretty printing
//};
//
///** Class containing egdes in a Graph strructure.
// */
//class Edge
//{
//      class Node *leftnode;           //!< pointer to first node
//      class Node *atomnode;           //!< pointer to second node
//};



#endif /*GRAPH_HPP_*/