[bcf653] | 1 | /*
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| 2 | * Project: MoleCuilder
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| 3 | * Description: creates and alters molecular systems
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[0aa122] | 4 | * Copyright (C) 2010-2012 University of Bonn. All rights reserved.
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[94d5ac6] | 5 | *
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| 6 | *
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| 7 | * This file is part of MoleCuilder.
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| 8 | *
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| 9 | * MoleCuilder is free software: you can redistribute it and/or modify
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| 10 | * it under the terms of the GNU General Public License as published by
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| 11 | * the Free Software Foundation, either version 2 of the License, or
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| 12 | * (at your option) any later version.
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| 13 | *
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| 14 | * MoleCuilder is distributed in the hope that it will be useful,
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| 15 | * but WITHOUT ANY WARRANTY; without even the implied warranty of
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| 16 | * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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| 17 | * GNU General Public License for more details.
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| 18 | *
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| 19 | * You should have received a copy of the GNU General Public License
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| 20 | * along with MoleCuilder. If not, see <http://www.gnu.org/licenses/>.
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[bcf653] | 21 | */
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| 22 |
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[d74077] | 23 | /*
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| 24 | * BoundaryPolygonSet.cpp
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| 25 | *
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| 26 | * Created on: Jul 29, 2010
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| 27 | * Author: heber
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| 28 | */
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| 29 |
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[bf3817] | 30 | // include config.h
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| 31 | #ifdef HAVE_CONFIG_H
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| 32 | #include <config.h>
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| 33 | #endif
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| 34 |
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[ad011c] | 35 | #include "CodePatterns/MemDebug.hpp"
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[bbbad5] | 36 |
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[d74077] | 37 | #include "BoundaryPolygonSet.hpp"
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| 38 |
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| 39 | #include <iostream>
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| 40 |
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| 41 | #include "BoundaryLineSet.hpp"
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| 42 | #include "BoundaryPointSet.hpp"
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| 43 | #include "BoundaryTriangleSet.hpp"
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[6f0841] | 44 | #include "Atom/TesselPoint.hpp"
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[d74077] | 45 |
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[ad011c] | 46 | #include "CodePatterns/Assert.hpp"
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| 47 | #include "CodePatterns/Info.hpp"
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| 48 | #include "CodePatterns/Log.hpp"
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[255829] | 49 | #include "CodePatterns/Verbose.hpp"
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| 50 | #include "Helpers/helpers.hpp"
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[8f4df1] | 51 | #include "LinearAlgebra/Plane.hpp"
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| 52 | #include "LinearAlgebra/Vector.hpp"
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[d74077] | 53 |
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| 54 | using namespace std;
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| 55 |
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| 56 | /** Constructor for BoundaryPolygonSet.
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| 57 | */
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| 58 | BoundaryPolygonSet::BoundaryPolygonSet() :
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| 59 | Nr(-1)
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| 60 | {
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[ce7bfd] | 61 | //Info FunctionInfo(__func__);
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[d74077] | 62 | }
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| 63 | ;
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| 64 |
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| 65 | /** Destructor of BoundaryPolygonSet.
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| 66 | * Just clears endpoints.
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| 67 | * \note When removing triangles from a class Tesselation, use RemoveTesselationTriangle()
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| 68 | */
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| 69 | BoundaryPolygonSet::~BoundaryPolygonSet()
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| 70 | {
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[ce7bfd] | 71 | //Info FunctionInfo(__func__);
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[d74077] | 72 | endpoints.clear();
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[ce7bfd] | 73 | LOG(5, "DEBUG: Erasing polygon Nr." << Nr << " itself.");
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[d74077] | 74 | }
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| 75 | ;
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| 76 |
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| 77 | /** Calculates the normal vector for this triangle.
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| 78 | * Is made unique by comparison with \a OtherVector to point in the other direction.
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| 79 | * \param &OtherVector direction vector to make normal vector unique.
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| 80 | * \return allocated vector in normal direction
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| 81 | */
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| 82 | Vector * BoundaryPolygonSet::GetNormalVector(const Vector &OtherVector) const
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| 83 | {
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[ce7bfd] | 84 | //Info FunctionInfo(__func__);
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[d74077] | 85 | // get normal vector
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| 86 | Vector TemporaryNormal;
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| 87 | Vector *TotalNormal = new Vector;
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| 88 | PointSet::const_iterator Runner[3];
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| 89 | for (int i = 0; i < 3; i++) {
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| 90 | Runner[i] = endpoints.begin();
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| 91 | for (int j = 0; j < i; j++) { // go as much further
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| 92 | Runner[i]++;
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| 93 | if (Runner[i] == endpoints.end()) {
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[47d041] | 94 | ELOG(0, "There are less than three endpoints in the polygon!");
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[d74077] | 95 | performCriticalExit();
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| 96 | }
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| 97 | }
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| 98 | }
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| 99 | TotalNormal->Zero();
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| 100 | int counter = 0;
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| 101 | for (; Runner[2] != endpoints.end();) {
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| 102 | TemporaryNormal = Plane(((*Runner[0])->node->getPosition()),
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| 103 | ((*Runner[1])->node->getPosition()),
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| 104 | ((*Runner[2])->node->getPosition())).getNormal();
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| 105 | for (int i = 0; i < 3; i++) // increase each of them
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| 106 | Runner[i]++;
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| 107 | (*TotalNormal) += TemporaryNormal;
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| 108 | }
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[76096d] | 109 | if (counter != 0.)
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| 110 | TotalNormal->Scale(1. / (double) counter);
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[d74077] | 111 |
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| 112 | // make it always point inward (any offset vector onto plane projected onto normal vector suffices)
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| 113 | if (TotalNormal->ScalarProduct(OtherVector) > 0.)
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| 114 | TotalNormal->Scale(-1.);
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[ce7bfd] | 115 | LOG(4, "DEBUG: Normal Vector is " << *TotalNormal << ".");
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[d74077] | 116 |
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| 117 | return TotalNormal;
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| 118 | }
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| 119 | ;
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| 120 |
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| 121 | /** Calculates the center point of the triangle.
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| 122 | * Is third of the sum of all endpoints.
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| 123 | * \param *center central point on return.
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| 124 | */
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| 125 | void BoundaryPolygonSet::GetCenter(Vector * const center) const
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| 126 | {
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[ce7bfd] | 127 | //Info FunctionInfo(__func__);
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[d74077] | 128 | center->Zero();
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| 129 | int counter = 0;
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| 130 | for(PointSet::const_iterator Runner = endpoints.begin(); Runner != endpoints.end(); Runner++) {
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| 131 | (*center) += ((*Runner)->node->getPosition());
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| 132 | counter++;
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| 133 | }
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| 134 | center->Scale(1. / (double) counter);
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[ce7bfd] | 135 | LOG(4, "DEBUG: Center of BoundaryPolygonSet is at " << *center << ".");
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[d74077] | 136 | }
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| 137 |
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| 138 | /** Checks whether the polygons contains all three endpoints of the triangle.
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| 139 | * \param *triangle triangle to test
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| 140 | * \return true - triangle is contained polygon, false - is not
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| 141 | */
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| 142 | bool BoundaryPolygonSet::ContainsBoundaryTriangle(const BoundaryTriangleSet * const triangle) const
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| 143 | {
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[ce7bfd] | 144 | //Info FunctionInfo(__func__);
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[d74077] | 145 | return ContainsPresentTupel(triangle->endpoints, 3);
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| 146 | }
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| 147 | ;
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| 148 |
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| 149 | /** Checks whether the polygons contains both endpoints of the line.
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| 150 | * \param *line line to test
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| 151 | * \return true - line is of the triangle, false - is not
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| 152 | */
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| 153 | bool BoundaryPolygonSet::ContainsBoundaryLine(const BoundaryLineSet * const line) const
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| 154 | {
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[ce7bfd] | 155 | //Info FunctionInfo(__func__);
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[d74077] | 156 | return ContainsPresentTupel(line->endpoints, 2);
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| 157 | }
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| 158 | ;
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| 159 |
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| 160 | /** Checks whether point is any of the three endpoints this triangle contains.
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| 161 | * \param *point point to test
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| 162 | * \return true - point is of the triangle, false - is not
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| 163 | */
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| 164 | bool BoundaryPolygonSet::ContainsBoundaryPoint(const BoundaryPointSet * const point) const
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| 165 | {
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[ce7bfd] | 166 | //Info FunctionInfo(__func__);
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[d74077] | 167 | for (PointSet::const_iterator Runner = endpoints.begin(); Runner != endpoints.end(); Runner++) {
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| 168 | if (point == (*Runner)) {
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[ce7bfd] | 169 | LOG(4, "DEBUG: Checking against " << **Runner << ": Contained.");
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[d74077] | 170 | return true;
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| 171 | }
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| 172 | }
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| 173 | return false;
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| 174 | }
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| 175 | ;
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| 176 |
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| 177 | /** Checks whether point is any of the three endpoints this triangle contains.
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| 178 | * \param *point TesselPoint to test
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| 179 | * \return true - point is of the triangle, false - is not
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| 180 | */
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| 181 | bool BoundaryPolygonSet::ContainsBoundaryPoint(const TesselPoint * const point) const
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| 182 | {
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[ce7bfd] | 183 | //Info FunctionInfo(__func__);
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[d74077] | 184 | for (PointSet::const_iterator Runner = endpoints.begin(); Runner != endpoints.end(); Runner++)
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| 185 | if (point == (*Runner)->node) {
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[ce7bfd] | 186 | LOG(4, "DEBUG: Checking against " << **Runner << ": Contained.");
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[d74077] | 187 | return true;
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| 188 | }
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| 189 | return false;
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| 190 | }
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| 191 | ;
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| 192 |
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| 193 | /** Checks whether given array of \a *Points coincide with polygons's endpoints.
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| 194 | * \param **Points pointer to an array of BoundaryPointSet
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| 195 | * \param dim dimension of array
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| 196 | * \return true - set of points is contained in polygon, false - is not
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| 197 | */
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| 198 | bool BoundaryPolygonSet::ContainsPresentTupel(const BoundaryPointSet * const * Points, const int dim) const
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| 199 | {
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[ce7bfd] | 200 | //Info FunctionInfo(__func__);
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[d74077] | 201 | int counter = 0;
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[ce7bfd] | 202 | LOG(5, "DEBUG Polygon is " << *this);
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[d74077] | 203 | for (int i = 0; i < dim; i++) {
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[ce7bfd] | 204 | LOG(5, "DEBUG: Testing endpoint " << *Points[i]);
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[d74077] | 205 | if (ContainsBoundaryPoint(Points[i])) {
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| 206 | counter++;
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| 207 | }
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| 208 | }
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| 209 |
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| 210 | if (counter == dim)
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| 211 | return true;
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| 212 | else
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| 213 | return false;
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| 214 | }
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| 215 | ;
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| 216 |
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| 217 | /** Checks whether given PointList coincide with polygons's endpoints.
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| 218 | * \param &endpoints PointList
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| 219 | * \return true - set of points is contained in polygon, false - is not
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| 220 | */
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| 221 | bool BoundaryPolygonSet::ContainsPresentTupel(const PointSet &endpoints) const
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| 222 | {
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[ce7bfd] | 223 | //Info FunctionInfo(__func__);
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[d74077] | 224 | size_t counter = 0;
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[ce7bfd] | 225 | LOG(5, "DEBUG: Polygon is " << *this);
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[d74077] | 226 | for (PointSet::const_iterator Runner = endpoints.begin(); Runner != endpoints.end(); Runner++) {
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[ce7bfd] | 227 | LOG(5, "DEBUG: Testing endpoint " << **Runner);
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[d74077] | 228 | if (ContainsBoundaryPoint(*Runner))
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| 229 | counter++;
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| 230 | }
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| 231 |
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| 232 | if (counter == endpoints.size())
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| 233 | return true;
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| 234 | else
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| 235 | return false;
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| 236 | }
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| 237 | ;
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| 238 |
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| 239 | /** Checks whether given set of \a *Points coincide with polygons's endpoints.
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| 240 | * \param *P pointer to BoundaryPolygonSet
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| 241 | * \return true - is the very triangle, false - is not
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| 242 | */
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| 243 | bool BoundaryPolygonSet::ContainsPresentTupel(const BoundaryPolygonSet * const P) const
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| 244 | {
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| 245 | return ContainsPresentTupel((const PointSet) P->endpoints);
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| 246 | }
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| 247 | ;
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| 248 |
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| 249 | /** Gathers all the endpoints' triangles in a unique set.
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| 250 | * \return set of all triangles
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| 251 | */
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| 252 | TriangleSet * BoundaryPolygonSet::GetAllContainedTrianglesFromEndpoints() const
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| 253 | {
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[ce7bfd] | 254 | //Info FunctionInfo(__func__);
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[d74077] | 255 | pair<TriangleSet::iterator, bool> Tester;
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| 256 | TriangleSet *triangles = new TriangleSet;
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| 257 |
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| 258 | for (PointSet::const_iterator Runner = endpoints.begin(); Runner != endpoints.end(); Runner++)
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| 259 | for (LineMap::const_iterator Walker = (*Runner)->lines.begin(); Walker != (*Runner)->lines.end(); Walker++)
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| 260 | for (TriangleMap::const_iterator Sprinter = (Walker->second)->triangles.begin(); Sprinter != (Walker->second)->triangles.end(); Sprinter++) {
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[47d041] | 261 | //LOG(0, " Testing triangle " << *(Sprinter->second));
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[d74077] | 262 | if (ContainsBoundaryTriangle(Sprinter->second)) {
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| 263 | Tester = triangles->insert(Sprinter->second);
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| 264 | if (Tester.second)
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[ce7bfd] | 265 | LOG(4, "DEBUG: Adding triangle " << *(Sprinter->second));
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[d74077] | 266 | }
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| 267 | }
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| 268 |
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[ce7bfd] | 269 | LOG(3, "DEBUG: The Polygon of " << endpoints.size() << " endpoints has " << triangles->size() << " unique triangles in total.");
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[d74077] | 270 | return triangles;
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| 271 | }
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| 272 | ;
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| 273 |
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| 274 | /** Fills the endpoints of this polygon from the triangles attached to \a *line.
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| 275 | * \param *line lines with triangles attached
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| 276 | * \return true - polygon contains endpoints, false - line was NULL
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| 277 | */
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| 278 | bool BoundaryPolygonSet::FillPolygonFromTrianglesOfLine(const BoundaryLineSet * const line)
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| 279 | {
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[ce7bfd] | 280 | //Info FunctionInfo(__func__);
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[d74077] | 281 | pair<PointSet::iterator, bool> Tester;
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| 282 | if (line == NULL)
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| 283 | return false;
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[ce7bfd] | 284 | LOG(3, "DEBUG: Filling polygon from line " << *line);
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[d74077] | 285 | for (TriangleMap::const_iterator Runner = line->triangles.begin(); Runner != line->triangles.end(); Runner++) {
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| 286 | for (int i = 0; i < 3; i++) {
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| 287 | Tester = endpoints.insert((Runner->second)->endpoints[i]);
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| 288 | if (Tester.second)
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[ce7bfd] | 289 | LOG(4, "DEBUG: Inserting endpoint " << *((Runner->second)->endpoints[i]));
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[d74077] | 290 | }
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| 291 | }
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| 292 |
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| 293 | return true;
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| 294 | }
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| 295 | ;
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| 296 |
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| 297 | /** output operator for BoundaryPolygonSet.
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| 298 | * \param &ost output stream
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| 299 | * \param &a boundary polygon
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| 300 | */
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| 301 | ostream &operator <<(ostream &ost, const BoundaryPolygonSet &a)
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| 302 | {
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| 303 | ost << "[" << a.Nr << "|";
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| 304 | for (PointSet::const_iterator Runner = a.endpoints.begin(); Runner != a.endpoints.end();) {
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| 305 | ost << (*Runner)->node->getName();
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| 306 | Runner++;
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| 307 | if (Runner != a.endpoints.end())
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| 308 | ost << ",";
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| 309 | }
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| 310 | ost << "]";
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| 311 | return ost;
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| 312 | }
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| 313 | ;
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| 314 |
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