# # ChangeLog for src/documentation # # Generated by Trac 1.4.4 # Mar 26, 2025, 10:26:19 PM Wed, 22 Feb 2012 11:26:49 GMT Frederik Heber <heber@…> [ea7a50] * src/Descriptors/AtomOfMoleculeSelectionDescriptor.cpp (modified) * src/Descriptors/AtomOfMoleculeSelectionDescriptor_impl.hpp (modified) * src/Descriptors/MoleculeNameDescriptor.cpp (modified) * src/Descriptors/MoleculeNameDescriptor_impl.hpp (modified) * src/Descriptors/MoleculeOfAtomSelectionDescriptor.cpp (modified) * src/Descriptors/MoleculeOfAtomSelectionDescriptor_impl.hpp (modified) * src/Descriptors/MoleculeOrderDescriptor.cpp (modified) * src/Descriptors/MoleculeOrderDescriptor_impl.hpp (modified) * src/Descriptors/MoleculePtrDescriptor.cpp (modified) * src/Descriptors/MoleculePtrDescriptor_impl.hpp (modified) * src/World.hpp (modified) * src/documentation/constructs/descriptors.dox (modified) Rewrote some of the descriptors such that they access World's AtomSet ... Fri, 17 Feb 2012 15:24:18 GMT Frederik Heber <heber@…> [560bbe] * src/Atom/AtomicInfo.cpp (modified) * src/Atom/AtomicInfo.hpp (modified) * src/Atom/atom.cpp (modified) * src/Atom/atom.hpp (modified) * src/documentation/constructs/molecules.dox (modified) * src/molecule.cpp (modified) * src/molecule.hpp (modified) * tests/regression/Tesselation/BigNonConvex/post/NonConvexEnvelope.dat (modified) * tests/regression/Tesselation/BigNonConvex/post/NonConvexEnvelope.r3d (modified) AtomicInfo now also (re)stores ParticleInfo::Nr, molecule has own ... Fri, 17 Feb 2012 15:24:18 GMT Frederik Heber <heber@…> [b97a60] * src/IdPool.hpp (modified) * src/IdPool_impl.hpp (modified) * src/IdPool_policy.hpp (added) * src/World.cpp (modified) * src/World.hpp (modified) * src/documentation/constructs/world.dox (modified) * tests/regression/Filling/FillVoidWithMolecule/post/tensid.data (modified) * tests/regression/Filling/FillVoidWithMolecule/post/test.xyz (modified) Modified IdPool implementation to give either unique or continuous ... Fri, 17 Feb 2012 15:24:17 GMT Frederik Heber <heber@…> [2ad1ec] * src/Atom/atom_bondedparticle.cpp (modified) * src/Atom/atom_bondedparticleinfo.cpp (modified) * src/Atom/atom_observable.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_bond.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_bond.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.hpp (modified) * src/documentation/constructs/constructs.dox (modified) * src/documentation/constructs/qt-gui.dox (added) * src/documentation/userinterfaces/graphical.dox (modified) Rewrite of how GLWorldScene and subsidiaries get notified of changed ... Mon, 02 Jan 2012 13:34:29 GMT Frederik Heber <heber@…> [7afb77] * src/Descriptors/AtomsWithinDistanceOfDescriptor.cpp (added) * src/Descriptors/AtomsWithinDistanceOfDescriptor.hpp (added) * src/Descriptors/AtomsWithinDistanceOfDescriptor_impl.hpp (added) * src/Makefile.am (modified) * src/documentation/constructs/descriptors.dox (modified) Added AtomsWithinDistanceOf descriptor. - this is basically just a ... Mon, 02 Jan 2012 13:34:28 GMT Frederik Heber <heber@…> [b49568] * src/Descriptors/AtomOfMoleculeDescriptor.cpp (added) * src/Descriptors/AtomOfMoleculeDescriptor.hpp (added) * src/Descriptors/AtomOfMoleculeDescriptor_impl.hpp (added) * src/Descriptors/unittests/AtomDescriptorUnitTest.cpp (modified) * src/Descriptors/unittests/AtomDescriptorUnitTest.hpp (modified) * src/Makefile.am (modified) * src/documentation/constructs/descriptors.dox (modified) Added new descriptor AtomOfMolecule. - also added new unit test ... Wed, 28 Dec 2011 15:30:06 GMT Frederik Heber <heber@…> [df9cbd] * src/documentation/constructs/constructs.dox (modified) * src/documentation/constructs/linkedcell.dox (added) Added documentation on how refactored linked cell structure is ... Wed, 28 Dec 2011 15:27:49 GMT Frederik Heber <heber@…> [3e4fb6] * src/IdPool.hpp (added) * src/IdPool_impl.hpp (added) * src/Makefile.am (modified) * src/World.cpp (modified) * src/World.hpp (modified) * src/documentation/constructs/world.dox (modified) Added template class IdPool used by World to manage defragmentable id ... Thu, 10 Nov 2011 16:05:39 GMT Frederik Heber <heber@…> [936a02] * data/bondtables/bondtable.dat (added) * data/databases/Hbondangle.db (moved) * data/databases/Hbonddistance.db (moved) * data/databases/elements.db (moved) * data/databases/orbitals.db (moved) * data/databases/valence.db (moved) * data/molecules/ATPase.pdb (added) * data/molecules/AntifreezeProtein.pdb (added) * data/molecules/bpti.pdb (added) * data/molecules/oxirane.pdb (added) * data/molecules/portlandite.pdb (added) * data/molecules/propene.pdb (added) * data/molecules/testosterone.pdb (added) * data/molecules/tmv_periodic_segment.pdb (added) * data/molecules/tmv_periodic_tube.pdb (added) * data/molecules/water.pdb (added) * src/Makefile.am (modified) * src/documentation/data.dox (added) * src/documentation/mainpage.dox (modified) Creating data dir for bondtables, databases, and molecules. - Moved ... Thu, 10 Nov 2011 11:23:54 GMT Frederik Heber <heber@…> [1a041f] * src/documentation/debug.dox (added) DOCU: added documentation on how to debug the code. Fri, 04 Nov 2011 15:19:31 GMT Frederik Heber <heber@…> [6bdba0] * LinearAlgebra/doc/Makefile.am (modified) * LinearAlgebra/src/documentation/Makefile.am (added) * doc/Makefile.am (modified) * src/documentation/Makefile.am (added) DISTCHECKFIX: all .dox files are now given as EXTRA_DIST. - ... Thu, 03 Nov 2011 10:35:53 GMT Frederik Heber <heber@…> [f11c23] * src/documentation/code.dox (modified) * src/documentation/future.dox (added) Added documentation on how to understand the code and its (maybe) ... Tue, 01 Nov 2011 20:45:48 GMT Frederik Heber <heber@…> [a28cc4] * src/documentation/userinterfaces/python.dox (added) * src/documentation/userinterfaces/userinterfaces.dox (modified) DOCU: Added python as fourth user interface. Tue, 01 Nov 2011 20:45:14 GMT Frederik Heber <heber@…> [35a889] * src/documentation/userinterfaces/commandline.dox (modified) * src/documentation/userinterfaces/graphical.dox (modified) * src/documentation/userinterfaces/textmenu.dox (modified) * src/documentation/userinterfaces/userinterfaces.dox (modified) DOCUFIX: Prefixes all three userinterface labels with userinterfaces-. Tue, 01 Nov 2011 19:56:15 GMT Frederik Heber <heber@…> [bc3411] * src/documentation/constructs/serialization.dox (modified) DOCU: Added some important notes in usual mistakes to serialization.dox. Mon, 31 Oct 2011 17:13:52 GMT Frederik Heber <heber@…> [750cff] * src/Actions/Action.hpp (modified) * src/builder.cpp (modified) * src/documentation/code.dox (modified) * src/documentation/constructs/actions.dox (modified) * src/documentation/constructs/atoms.dox (added) * src/documentation/constructs/bondgraph.dox (modified) * src/documentation/constructs/constructs.dox (modified) * src/documentation/constructs/descriptors.dox (modified) * src/documentation/constructs/fragmentation.dox (modified) * src/documentation/constructs/linearalgebra.dox (added) * src/documentation/constructs/logger.dox (added) * src/documentation/constructs/molecules.dox (added) * src/documentation/constructs/observers_observables.dox (modified) * src/documentation/constructs/parsers.dox (modified) * src/documentation/constructs/randomnumbers.dox (modified) * src/documentation/constructs/serialization.dox (modified) * src/documentation/constructs/shapes.dox (modified) * src/documentation/constructs/tesselation.dox (modified) * src/documentation/constructs/world.dox (added) * src/documentation/copyright.dox (added) * src/documentation/faq.dox (modified) * src/documentation/fileformats.dox (added) * src/documentation/howtos/action.dox (added) * src/documentation/howtos/howtos.dox (added) * src/documentation/install.dox (modified) * src/documentation/launch.dox (modified) * src/documentation/mainpage.dox (modified) * src/documentation/tests/code-tests.dox (modified) * src/documentation/tests/regression-tests.dox (modified) * src/documentation/tests/tests.dox (modified) * src/documentation/tests/unit-tests.dox (modified) * src/documentation/userinterfaces/commandline.dox (added) * src/documentation/userinterfaces/graphical.dox (added) * src/documentation/userinterfaces/textmenu.dox (added) * src/documentation/userinterfaces/userinterfaces.dox (added) HUGE: Update on documenation. - a general skeleton of the ... Fri, 28 Oct 2011 15:05:03 GMT Frederik Heber <heber@…> [19bc74] * src/documentation/code.dox (added) * src/documentation/constructs/actions.dox (moved) * src/documentation/constructs/bondgraph.dox (added) * src/documentation/constructs/constructs.dox (added) * src/documentation/constructs/descriptors.dox (added) * src/documentation/constructs/fragmentation.dox (added) * src/documentation/constructs/observers_observables.dox (moved) * src/documentation/constructs/parsers.dox (added) * src/documentation/constructs/randomnumbers.dox (added) * src/documentation/constructs/serialization.dox (moved) * src/documentation/constructs/shapes.dox (added) * src/documentation/constructs/tesselation.dox (added) * src/documentation/faq.dox (modified) * src/documentation/groups.dox (deleted) * src/documentation/install.dox (added) * src/documentation/launch.dox (added) * src/documentation/mainpage.dox (modified) * src/documentation/tests/code-tests.dox (added) * src/documentation/tests/regression-tests.dox (added) * src/documentation/tests/tests.dox (added) * src/documentation/tests/unit-tests.dox (added) Explained most of the tests. Thu, 13 Oct 2011 19:04:15 GMT Frederik Heber <heber@…> [ce133f] * LinearAlgebra/doc/Doxyfile (modified) * LinearAlgebra/src/documentation/groups.dox (added) * LinearAlgebra/src/documentation/mainpage.dox (added) * doc/Doxyfile (modified) * src/documentation/faq.dox (added) * src/documentation/groups.dox (added) * src/documentation/mainpage.dox (added) * src/documentation/observers_observables.dox (added) * src/documentation/regression-tests.dox (added) * src/documentation/serialization.dox (added) Initial commit for enhancing doxygen documentation. - added .dox ...