# # ChangeLog for src/documentation/constructs # # Generated by Trac 1.4.4 # Mar 21, 2025, 10:39:49 PM Fri, 26 Feb 2016 09:54:40 GMT Frederik Heber [0824dd] * src/documentation/constructs/qt-gui.dox (modified) Enhanced documentation for Qt constructs. Sun, 14 Feb 2016 12:34:29 GMT Frederik Heber [59f1bc] * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.hpp (modified) * src/documentation/constructs/qt-gui.dox (modified) All ..Inserted/..Removed signals now go through GLWorldScene. - ... Wed, 05 Aug 2015 17:32:09 GMT Frederik Heber [52c5d4] * src/documentation/constructs/qt-gui.dox (modified) DOCU: Updated documentation on Qt Gui construct. Wed, 05 Aug 2015 07:12:24 GMT Frederik Heber [10aee4] * src/Actions/Action.hpp (modified) * src/Actions/ActionQueue.cpp (modified) * src/Actions/ActionQueue.hpp (modified) * src/Actions/ActionRegistry.cpp (modified) * src/Actions/ActionRegistry.hpp (modified) * src/Actions/ActionSequence.cpp (modified) * src/Actions/ActionSequence.hpp (modified) * src/Actions/Action_impl_pre.hpp (modified) * src/Actions/CommandAction/HelpAction.cpp (modified) * src/Actions/FragmentationAction/MolecularDynamicsAction.cpp (modified) * src/Actions/FragmentationAction/StructuralOptimizationAction.cpp (modified) * src/Actions/GraphAction/SubgraphDissectionAction.cpp (modified) * src/Actions/MakroAction.cpp (modified) * src/Actions/MakroAction.hpp (modified) * src/Actions/MakroAction_impl_pre.hpp (modified) * src/Actions/MoleculeAction/TranslateAction.cpp (modified) * src/Actions/unittests/ActionSequenceUnitTest.cpp (modified) * src/UIElements/Menu/TextMenu/ActionMenuItem.cpp (modified) * src/UIElements/TextUI/TextWindow.cpp (modified) * src/documentation/constructs/actions.dox (modified) Cleaned up ActionQueue's interface: Actions are always cloned. - ... Sun, 19 Oct 2014 17:13:11 GMT Frederik Heber [8544b32] * doc/userguide/userguide.xml (modified) * src/documentation/constructs/tesselation.dox (modified) DOCU: Added extensive explanation how convexization works. - ... Wed, 10 Sep 2014 07:55:12 GMT Frederik Heber [cae614] * src/Actions/FillAction/FillRegularGridAction.cpp (modified) * src/Filling/Makefile.am (modified) * src/Filling/Preparators/BaseFillerPreparator.cpp (added) * src/Filling/Preparators/BaseFillerPreparator.hpp (added) * src/Filling/Preparators/BoxFillerPreparator.cpp (added) * src/Filling/Preparators/BoxFillerPreparator.hpp (added) * src/documentation/constructs/filling.dox (modified) Extracted filler preparing functionality from FillRegularGridAction. ... Fri, 27 Jun 2014 21:32:29 GMT Frederik Heber [1ba8a1] * src/FunctionApproximation/Extractors.hpp (modified) * src/FunctionApproximation/FunctionApproximation.hpp (modified) * src/Potentials/CompoundPotential.hpp (modified) * src/documentation/constructs/potentials.dox (modified) DOCU: Extended documentation on FunctionApproximation and potential ... Fri, 27 Jun 2014 11:43:27 GMT Frederik Heber [0932c2] * src/Potentials/Specifics/FourBodyPotential_Torsion.cpp (modified) * src/Potentials/Specifics/ManyBodyPotential_Tersoff.cpp (modified) * src/Potentials/Specifics/PairPotential_Harmonic.cpp (modified) * src/Potentials/Specifics/PairPotential_LennardJones.cpp (modified) * src/Potentials/Specifics/PairPotential_Morse.cpp (modified) * src/Potentials/Specifics/ThreeBodyPotential_Angle.cpp (modified) * src/Potentials/Specifics/unittests/Makefile.am (modified) * src/Potentials/unittests/Makefile.am (modified) * src/RandomNumbers/RandomNumberEngine_Encapsulation.hpp (modified) * src/documentation/constructs/potentials.dox (modified) * tests/regression/Potential/FitPotential/testsuite-potential-fit-potential.at (modified) FIX: RandomNumberEngine_Encapsulation::clone() did not set the seed ... Tue, 20 May 2014 09:14:56 GMT Frederik Heber [caece4] * src/Fragmentation/Fragmentation.cpp (modified) * src/documentation/code.dox (modified) * src/documentation/constructs/actions.dox (modified) * src/documentation/constructs/atoms.dox (modified) * src/documentation/constructs/bondgraph.dox (modified) * src/documentation/constructs/filling.dox (modified) * src/documentation/constructs/fragmentation.dox (modified) * src/documentation/constructs/potentials.dox (modified) * src/documentation/constructs/serialization.dox (modified) * src/documentation/constructs/shaperegistry.dox (modified) * src/documentation/constructs/shapes.dox (modified) * src/documentation/constructs/tesselation.dox (modified) * src/documentation/constructs/validators.dox (modified) * src/documentation/copyright.dox (modified) * src/documentation/fileformats.dox (modified) * src/documentation/future.dox (modified) * src/documentation/install.dox (modified) * src/documentation/launch.dox (modified) * src/documentation/mainpage.dox (modified) * src/documentation/tests/code-tests.dox (modified) * src/documentation/tests/regression-tests.dox (modified) * src/documentation/userinterfaces/commandline.dox (modified) * src/documentation/userinterfaces/graphical.dox (modified) * src/documentation/userinterfaces/python.dox (modified) * src/documentation/userinterfaces/textmenu.dox (modified) Enhanced documentation significantly. - went through all of the ... Fri, 03 May 2013 11:58:26 GMT Frederik Heber [48d20d] * configure.ac (modified) * src/Actions/FragmentationAction/FitPotentialAction.cpp (added) * src/Actions/FragmentationAction/FitPotentialAction.def (added) * src/Actions/FragmentationAction/FitPotentialAction.hpp (added) * src/Actions/GlobalListOfActions.hpp (modified) * src/Actions/Makefile.am (modified) * src/LevMartester.cpp (deleted) * src/Makefile.am (modified) * src/documentation/constructs/constructs.dox (modified) * src/documentation/constructs/potentials.dox (modified) * src/documentation/install.dox (modified) * tests/Python/AllActions/options.dat (modified) * tests/regression/Fragmentation/FitPotential/pre/angle_homology.dat (added) * tests/regression/Fragmentation/FitPotential/pre/length_homology.dat (added) * tests/regression/Fragmentation/FitPotential/testsuite-fragmentation-fit-potential.at (added) * tests/regression/Fragmentation/testsuite-fragmentation.at (modified) * tests/regression/Makefile.am (modified) * tests/regression/testsuite.at (modified) Added new action FitPotentialAction to fit empirical potentials. - ... Mon, 11 Mar 2013 22:31:46 GMT Frederik Heber [8c9049] * src/documentation/constructs/qt-gui.dox (modified) * src/documentation/constructs/shaperegistry.dox (modified) DOCU: Updates for qt-gui and shaperegistry documentation. Mon, 25 Feb 2013 17:29:09 GMT Frederik Heber [201199] * src/documentation/constructs/constructs.dox (modified) * src/documentation/constructs/potentials.dox (added) DOCU: Added documentation explaining purpose of potentials. Sun, 24 Feb 2013 12:59:34 GMT Frederik Heber [eee1b7] * src/documentation/constructs/actions.dox (modified) * src/documentation/constructs/constructs.dox (modified) * src/documentation/constructs/parameters.dox (added) * src/documentation/constructs/qt-gui.dox (modified) * src/documentation/constructs/queries.dox (added) * src/documentation/constructs/shaperegistry.dox (added) * src/documentation/constructs/shapes.dox (modified) * src/documentation/constructs/validators.dox (added) DOCU: Documentation on ShapeRegistry, QtUI changes, validators, and ... Fri, 14 Dec 2012 13:03:36 GMT Frederik Heber [7ef5b9a] * src/UIElements/Dialog.hpp (modified) * src/documentation/constructs/actions.dox (modified) DOCU: Extended documentation on how values from the user are ... Wed, 11 Apr 2012 16:56:55 GMT Frederik Heber [b2c302] * src/Actions/Action.hpp (modified) * src/Actions/ActionRegistry.hpp (modified) * src/Actions/ValueStorage.hpp (modified) * src/UIElements/Dialog.hpp (modified) * src/documentation/constructs/actions.dox (modified) * src/documentation/constructs/constructs.dox (modified) * src/documentation/constructs/values.dox (added) * src/documentation/userinterfaces/userinterfaces.dox (modified) DOCU: Extended documentation on how values from the user are ... Fri, 06 Apr 2012 11:46:15 GMT Frederik Heber [760c4c] * src/Atom/atom_bondedparticle.cpp (modified) * src/Atom/atom_observable.hpp (modified) * src/Atom/atom_particleinfo.cpp (modified) * src/documentation/constructs/observers_observables.dox (modified) Cleaned observer structure in atom. - Added new channel ... Fri, 06 Apr 2012 11:46:15 GMT Frederik Heber [d25bec] * src/World.hpp (modified) * src/documentation/constructs/observers_observables.dox (modified) Cleaned the structure of Observers, i.e. what they report. - The ... Fri, 06 Apr 2012 11:44:09 GMT Frederik Heber [57dd40] * src/Actions/AtomAction/RemoveAction.cpp (modified) * src/Actions/Makefile.am (modified) * src/Actions/UndoRedoHelpers.cpp (added) * src/Actions/UndoRedoHelpers.hpp (added) * src/documentation/constructs/actions.dox (modified) Extracted removal and adding of atoms from AtomicInfo to ... Fri, 30 Mar 2012 09:18:26 GMT Frederik Heber [dba7b0] * src/documentation/constructs/filling.dox (modified) Extended filling documentation for Inserter. Fri, 30 Mar 2012 09:16:31 GMT Frederik Heber [b380ed] * src/documentation/constructs/constructs.dox (modified) * src/documentation/constructs/filling.dox (added) DOCU: Added concept for new construct Filling. Fri, 30 Mar 2012 09:16:31 GMT Frederik Heber [9e1d01] * src/Atom/CopyAtoms/CopyAtomsInterface.hpp (added) * src/Atom/CopyAtoms/CopyAtoms_SaturateDanglingBonds.cpp (added) * src/Atom/CopyAtoms/CopyAtoms_SaturateDanglingBonds.hpp (added) * src/Atom/CopyAtoms/CopyAtoms_Simple.hpp (added) * src/Atom/CopyAtoms/CopyAtoms_withBonds.cpp (added) * src/Atom/CopyAtoms/CopyAtoms_withBonds.hpp (added) * src/Atom/Makefile.am (modified) * src/Atom/unittests/CopyAtomsInterfaceUnitTest.cpp (added) * src/Atom/unittests/CopyAtomsInterfaceUnitTest.hpp (added) * src/Atom/unittests/Makefile.am (modified) * src/documentation/constructs/atoms.dox (modified) Added CopyAtoms structure. - this creates a copy of a vector of ... Wed, 22 Feb 2012 11:28:52 GMT Frederik Heber [38c5d1] * src/documentation/constructs/linkedcell.dox (modified) Documentation update on how to use the new linked cell construct. Wed, 22 Feb 2012 11:26:49 GMT Frederik Heber [ea7a50] * src/Descriptors/AtomOfMoleculeSelectionDescriptor.cpp (modified) * src/Descriptors/AtomOfMoleculeSelectionDescriptor_impl.hpp (modified) * src/Descriptors/MoleculeNameDescriptor.cpp (modified) * src/Descriptors/MoleculeNameDescriptor_impl.hpp (modified) * src/Descriptors/MoleculeOfAtomSelectionDescriptor.cpp (modified) * src/Descriptors/MoleculeOfAtomSelectionDescriptor_impl.hpp (modified) * src/Descriptors/MoleculeOrderDescriptor.cpp (modified) * src/Descriptors/MoleculeOrderDescriptor_impl.hpp (modified) * src/Descriptors/MoleculePtrDescriptor.cpp (modified) * src/Descriptors/MoleculePtrDescriptor_impl.hpp (modified) * src/World.hpp (modified) * src/documentation/constructs/descriptors.dox (modified) Rewrote some of the descriptors such that they access World's AtomSet ... Fri, 17 Feb 2012 15:24:18 GMT Frederik Heber [560bbe] * src/Atom/AtomicInfo.cpp (modified) * src/Atom/AtomicInfo.hpp (modified) * src/Atom/atom.cpp (modified) * src/Atom/atom.hpp (modified) * src/documentation/constructs/molecules.dox (modified) * src/molecule.cpp (modified) * src/molecule.hpp (modified) * tests/regression/Tesselation/BigNonConvex/post/NonConvexEnvelope.dat (modified) * tests/regression/Tesselation/BigNonConvex/post/NonConvexEnvelope.r3d (modified) AtomicInfo now also (re)stores ParticleInfo::Nr, molecule has own ... Fri, 17 Feb 2012 15:24:18 GMT Frederik Heber [b97a60] * src/IdPool.hpp (modified) * src/IdPool_impl.hpp (modified) * src/IdPool_policy.hpp (added) * src/World.cpp (modified) * src/World.hpp (modified) * src/documentation/constructs/world.dox (modified) * tests/regression/Filling/FillVoidWithMolecule/post/tensid.data (modified) * tests/regression/Filling/FillVoidWithMolecule/post/test.xyz (modified) Modified IdPool implementation to give either unique or continuous ... Fri, 17 Feb 2012 15:24:17 GMT Frederik Heber [2ad1ec] * src/Atom/atom_bondedparticle.cpp (modified) * src/Atom/atom_bondedparticleinfo.cpp (modified) * src/Atom/atom_observable.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_bond.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_bond.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.hpp (modified) * src/documentation/constructs/constructs.dox (modified) * src/documentation/constructs/qt-gui.dox (added) * src/documentation/userinterfaces/graphical.dox (modified) Rewrite of how GLWorldScene and subsidiaries get notified of changed ... Mon, 02 Jan 2012 13:34:29 GMT Frederik Heber [7afb77] * src/Descriptors/AtomsWithinDistanceOfDescriptor.cpp (added) * src/Descriptors/AtomsWithinDistanceOfDescriptor.hpp (added) * src/Descriptors/AtomsWithinDistanceOfDescriptor_impl.hpp (added) * src/Makefile.am (modified) * src/documentation/constructs/descriptors.dox (modified) Added AtomsWithinDistanceOf descriptor. - this is basically just a ... Mon, 02 Jan 2012 13:34:28 GMT Frederik Heber [b49568] * src/Descriptors/AtomOfMoleculeDescriptor.cpp (added) * src/Descriptors/AtomOfMoleculeDescriptor.hpp (added) * src/Descriptors/AtomOfMoleculeDescriptor_impl.hpp (added) * src/Descriptors/unittests/AtomDescriptorUnitTest.cpp (modified) * src/Descriptors/unittests/AtomDescriptorUnitTest.hpp (modified) * src/Makefile.am (modified) * src/documentation/constructs/descriptors.dox (modified) Added new descriptor AtomOfMolecule. - also added new unit test ... Wed, 28 Dec 2011 15:30:06 GMT Frederik Heber [df9cbd] * src/documentation/constructs/constructs.dox (modified) * src/documentation/constructs/linkedcell.dox (added) Added documentation on how refactored linked cell structure is ... Wed, 28 Dec 2011 15:27:49 GMT Frederik Heber [3e4fb6] * src/IdPool.hpp (added) * src/IdPool_impl.hpp (added) * src/Makefile.am (modified) * src/World.cpp (modified) * src/World.hpp (modified) * src/documentation/constructs/world.dox (modified) Added template class IdPool used by World to manage defragmentable id ... Tue, 01 Nov 2011 19:56:15 GMT Frederik Heber [bc3411] * src/documentation/constructs/serialization.dox (modified) DOCU: Added some important notes in usual mistakes to serialization.dox. Mon, 31 Oct 2011 17:13:52 GMT Frederik Heber [750cff] * src/Actions/Action.hpp (modified) * src/builder.cpp (modified) * src/documentation/code.dox (modified) * src/documentation/constructs/actions.dox (modified) * src/documentation/constructs/atoms.dox (added) * src/documentation/constructs/bondgraph.dox (modified) * src/documentation/constructs/constructs.dox (modified) * src/documentation/constructs/descriptors.dox (modified) * src/documentation/constructs/fragmentation.dox (modified) * src/documentation/constructs/linearalgebra.dox (added) * src/documentation/constructs/logger.dox (added) * src/documentation/constructs/molecules.dox (added) * src/documentation/constructs/observers_observables.dox (modified) * src/documentation/constructs/parsers.dox (modified) * src/documentation/constructs/randomnumbers.dox (modified) * src/documentation/constructs/serialization.dox (modified) * src/documentation/constructs/shapes.dox (modified) * src/documentation/constructs/tesselation.dox (modified) * src/documentation/constructs/world.dox (added) * src/documentation/copyright.dox (added) * src/documentation/faq.dox (modified) * src/documentation/fileformats.dox (added) * src/documentation/howtos/action.dox (added) * src/documentation/howtos/howtos.dox (added) * src/documentation/install.dox (modified) * src/documentation/launch.dox (modified) * src/documentation/mainpage.dox (modified) * src/documentation/tests/code-tests.dox (modified) * src/documentation/tests/regression-tests.dox (modified) * src/documentation/tests/tests.dox (modified) * src/documentation/tests/unit-tests.dox (modified) * src/documentation/userinterfaces/commandline.dox (added) * src/documentation/userinterfaces/graphical.dox (added) * src/documentation/userinterfaces/textmenu.dox (added) * src/documentation/userinterfaces/userinterfaces.dox (added) HUGE: Update on documenation. - a general skeleton of the ... Fri, 28 Oct 2011 15:05:03 GMT Frederik Heber [19bc74] * src/documentation/code.dox (added) * src/documentation/constructs/actions.dox (moved) * src/documentation/constructs/bondgraph.dox (added) * src/documentation/constructs/constructs.dox (added) * src/documentation/constructs/descriptors.dox (added) * src/documentation/constructs/fragmentation.dox (added) * src/documentation/constructs/observers_observables.dox (moved) * src/documentation/constructs/parsers.dox (added) * src/documentation/constructs/randomnumbers.dox (added) * src/documentation/constructs/serialization.dox (moved) * src/documentation/constructs/shapes.dox (added) * src/documentation/constructs/tesselation.dox (added) * src/documentation/faq.dox (modified) * src/documentation/groups.dox (deleted) * src/documentation/install.dox (added) * src/documentation/launch.dox (added) * src/documentation/mainpage.dox (modified) * src/documentation/tests/code-tests.dox (added) * src/documentation/tests/regression-tests.dox (added) * src/documentation/tests/tests.dox (added) * src/documentation/tests/unit-tests.dox (added) Explained most of the tests.