# # ChangeLog for src/UIElements # # Generated by Trac 1.4.4 # Mar 30, 2025, 11:05:34 AM Fri, 26 Feb 2016 09:54:40 GMT Frederik Heber <heber@…> [1187c5] * src/Atom/atom.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedAtom.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedAtom.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) * src/UIElements/Views/Qt4/QtInfoBox.cpp (modified) FIX: QtObservedAtom's AtomMoleculeIndex was not informed of molecule ... Fri, 26 Feb 2016 09:46:19 GMT Frederik Heber <heber@…> [640cbd] * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) FIX: emit changed signal before moleculeEmptied. Fri, 26 Feb 2016 09:46:19 GMT Frederik Heber <heber@…> [e29427] * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.hpp (modified) GLWorldScene RemovedMolecules now uses QtObservedMolecule* as key. ... Fri, 26 Feb 2016 09:46:19 GMT Frederik Heber <heber@…> [805fdc] * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) FIX: GLWorldScene's moleculesAtomRemoved was checking ... Fri, 26 Feb 2016 09:46:19 GMT Frederik Heber <heber@…> [5c9604] * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.hpp (modified) SignedOn_t in QtObservedInstanceBoard is again just a set. - we do ... Fri, 26 Feb 2016 09:46:19 GMT Frederik Heber <heber@…> [8b59dd] * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.hpp (modified) Removed last...removed in QtObservedInstanceBoard. - this does not ... Fri, 26 Feb 2016 09:46:18 GMT Frederik Heber <heber@…> [92af1b] * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.hpp (modified) tempcommit: Removed atomDelayed stuff in QtObservedInstanceBoard's ... Fri, 26 Feb 2016 09:46:18 GMT Frederik Heber <heber@…> [96e145] * src/UIElements/Qt4/InstanceBoard/QtObservedMolecule.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedMolecule.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.hpp (modified) AtomInserted/Removed of QtObservedMolecule sends ptr as unique key. ... Fri, 26 Feb 2016 09:46:18 GMT Frederik Heber <heber@…> [bcf9cd] * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.hpp (modified) GLWorldScene places GLMoleculeObject_molecule into extra list before ... Sun, 14 Feb 2016 12:34:30 GMT Frederik Heber <heber@…> [23221f] * src/UIElements/Qt4/InstanceBoard/ObservedValuesContainer.hpp (modified) * src/UIElements/Qt4/InstanceBoard/ObservedValuesContainer_impl.hpp (modified) Removed RefCounted... again. Sun, 14 Feb 2016 12:34:29 GMT Frederik Heber <heber@…> [59f1bc] * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.hpp (modified) * src/documentation/constructs/qt-gui.dox (modified) All ..Inserted/..Removed signals now go through GLWorldScene. - ... Sun, 14 Feb 2016 12:34:29 GMT Frederik Heber <heber@…> [03e69e] * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) FIX: GLMoleculeObject_.. does not care whether selection state did ... Sun, 14 Feb 2016 12:34:29 GMT Frederik Heber <heber@…> [8281cc] * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.hpp (modified) FIX: Making sure that atomInserted is received from same source in ... Sun, 14 Feb 2016 12:34:29 GMT Frederik Heber <heber@…> [1c0961] * src/UIElements/Qt4/InstanceBoard/QtObservedAtom.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedAtom.hpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedMolecule.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedMolecule.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.hpp (modified) FIX: indexChanged from QtObserved... transmit both old and new id. Sun, 14 Feb 2016 12:34:29 GMT Frederik Heber <heber@…> [62a0ee] * src/UIElements/Qt4/InstanceBoard/ObservedValuesContainer.hpp (modified) * src/UIElements/Qt4/InstanceBoard/ObservedValuesContainer_impl.hpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedAtom.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedAtom.hpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.hpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedMolecule.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedMolecule.hpp (modified) QtObserved... now count the subjectKilled() from the containes ... Sun, 14 Feb 2016 12:34:28 GMT Frederik Heber <heber@…> [1b07b1] * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.hpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedMolecule.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedMolecule.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeList.cpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeList.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.hpp (modified) QtObservedInstanceBoard now sends QtObserved..::ptr around in ... Sun, 14 Feb 2016 12:34:28 GMT Frederik Heber <heber@…> [e7ed12] * src/UIElements/Qt4/InstanceBoard/ObservedValuesContainer.hpp (modified) * src/UIElements/Qt4/InstanceBoard/ObservedValuesContainer_impl.hpp (modified) Combined checks into checkRemoval() in ObservedValuesContainer. Sun, 14 Feb 2016 12:34:28 GMT Frederik Heber <heber@…> [387a84] * src/UIElements/Qt4/InstanceBoard/ObservedValuesContainer.hpp (modified) * src/UIElements/Qt4/InstanceBoard/ObservedValuesContainer_impl.hpp (modified) FIX: Added mutex to ObservedValuesContainer to ensure atomic access. Sun, 14 Feb 2016 12:34:27 GMT Frederik Heber <heber@…> [5aec20] * src/UIElements/Qt4/QtMainWindow.cpp (modified) * src/UIElements/Views/Qt4/QtElementList.cpp (modified) * src/UIElements/Views/Qt4/QtElementList.hpp (modified) QtElementList must not use atom but only QtObservedAtom. Sun, 14 Feb 2016 12:34:27 GMT Frederik Heber <heber@…> [4cac6c] * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) CHECK: Don't admonish empty missed states in GLWorldScene? - ... Sun, 14 Feb 2016 12:34:27 GMT Frederik Heber <heber@…> [7ded1c] * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) GLMoleculeObject_atom and .._molecule don't get QtObserved... right ... Sun, 14 Feb 2016 12:34:27 GMT Frederik Heber <heber@…> [3fe318] * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.hpp (modified) CHECK: tempcommit: Removed Cacheable of TesselationHull for ... Sun, 14 Feb 2016 12:34:27 GMT Frederik Heber <heber@…> [aa41a3] * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeList.cpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeList.hpp (modified) QtMoleculeList must not use QtObservedMolecules in lists but only ... Sun, 14 Feb 2016 12:34:26 GMT Frederik Heber <heber@…> [6bce88] * src/UIElements/Qt4/InstanceBoard/ObservedValuesContainer_impl.hpp (modified) ObservedValuesContainer now asserts that observedinstance has been ... Sun, 14 Feb 2016 12:34:26 GMT Frederik Heber <heber@…> [393342] * src/UIElements/Qt4/InstanceBoard/ObservedValuesContainer.hpp (modified) * src/UIElements/Qt4/InstanceBoard/ObservedValuesContainer_impl.hpp (modified) FIX: ObservesValuesContainer uses internal struct for two iterators ... Sun, 14 Feb 2016 12:34:26 GMT Frederik Heber <heber@…> [0af22d] * src/UIElements/Qt4/InstanceBoard/ObservedValuesContainer.hpp (modified) * src/UIElements/Qt4/InstanceBoard/ObservedValuesContainer_impl.hpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.cpp (modified) FIX: ObservedValuesContainer uses deque for internal observed values. ... Sun, 14 Feb 2016 12:33:43 GMT Frederik Heber <heber@…> [b43585] * src/UIElements/Makefile.am (modified) * src/UIElements/Qt4/QtMainWindow.cpp (modified) * src/UIElements/Qt4/QtMainWindow.hpp (modified) * src/UIElements/Views/Qt4/QtSelectionChangedAgent.cpp (deleted) * src/UIElements/Views/Qt4/QtSelectionChangedAgent.hpp (deleted) Removed QtSelectionChangedAgent. - it is no longer used. We either ... Sun, 14 Feb 2016 12:33:43 GMT Frederik Heber <heber@…> [0f368b] * src/UIElements/Qt4/QtMainWindow.cpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeListView.cpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeListView.hpp (modified) Removed QtSelectionAgent usage in QtMoleculeListView. - instead we ... Sun, 14 Feb 2016 12:33:43 GMT Frederik Heber <heber@…> [5cd3a33] * src/UIElements/Qt4/QtMainWindow.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldView.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldView.hpp (modified) Removed QtSelectionUsage in GLWorldView and related. - instead ... Sun, 14 Feb 2016 12:33:42 GMT Frederik Heber <heber@…> [9e9100] * src/UIElements/Qt4/InstanceBoard/QtObservedAtom.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedAtom.hpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedMolecule.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedMolecule.hpp (modified) Added ObservedValue for selection status of atoms and molecules to ... Sun, 14 Feb 2016 12:33:42 GMT Frederik Heber <heber@…> [6d4925] * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.hpp (modified) FIX: QtObservedInstanceBoard needs to allow delayed atomInserted from ... Sun, 14 Feb 2016 12:33:42 GMT Frederik Heber <heber@…> [42d7dc] * src/UIElements/Views/Qt4/QtInfoBox.cpp (modified) * src/UIElements/Views/Qt4/QtInfoBox.hpp (modified) QtInfoBox disconnects signals. Sun, 14 Feb 2016 12:33:42 GMT Frederik Heber <heber@…> [4e6ffe] * src/UIElements/Qt4/InstanceBoard/ObservedValuesContainer.hpp (modified) * src/UIElements/Qt4/InstanceBoard/ObservedValuesContainer_impl.hpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedAtom.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.hpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedMolecule.cpp (modified) FIX: ObservedValue need to be removed with a bit of delay. - ... Sun, 14 Feb 2016 12:33:42 GMT Frederik Heber <heber@…> [04c3a3] * src/UIElements/Qt4/InstanceBoard/ObservedValue_wCallback.hpp (modified) * src/UIElements/Qt4/InstanceBoard/ObservedValuesContainer.hpp (modified) * src/UIElements/Qt4/InstanceBoard/ObservedValuesContainer_impl.hpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedAtom.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedAtom.hpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedMolecule.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedMolecule.hpp (modified) QtObservedAtom, ..Molecule, and ObservedValue_wCallback have flag to ... Sun, 14 Feb 2016 12:33:41 GMT Frederik Heber <heber@…> [b2c2e4] * src/UIElements/Qt4/QtMainWindow.cpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeList.cpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeList.hpp (modified) * src/UIElements/Views/Qt4/QtInfoBox.cpp (modified) * src/UIElements/Views/Qt4/QtInfoBox.hpp (modified) FIX: Qt's parent properly set from QtMainWindow's point of view. Sun, 14 Feb 2016 12:33:41 GMT Frederik Heber <heber@…> [cf9287] * src/UIElements/Views/Qt4/QtInfoBox.cpp (modified) * src/UIElements/Views/Qt4/QtInfoBox.hpp (modified) Equipped QtInfoBox with mutex and split clearTabs(). - this avoids ... Sun, 14 Feb 2016 12:33:41 GMT Frederik Heber <heber@…> [3b9aa1] * src/UIElements/Qt4/InstanceBoard/QtObservedAtom.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedAtom.hpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedMolecule.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedMolecule.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_bond.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_bond.hpp (modified) FIX: All ObservedValue getters now return const references. - this ... Fri, 12 Feb 2016 23:15:40 GMT Frederik Heber <heber@…> [367489] * src/UIElements/Qt4/QtMainWindow.cpp (modified) * src/UIElements/Views/Qt4/QtInfoBox.cpp (modified) * src/UIElements/Views/Qt4/QtInfoBox.hpp (modified) QtInfoBox now obtains information completely from ... Fri, 12 Feb 2016 23:15:40 GMT Frederik Heber <heber@…> [5a9e34] * src/UIElements/Qt4/InstanceBoard/QtObservedMolecule.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedMolecule.hpp (modified) Extended QtObservedMolecule by Center, NonHydrogenCount, and BondCount. Fri, 12 Feb 2016 23:15:40 GMT Frederik Heber <heber@…> [fe493f] * src/UIElements/Qt4/InstanceBoard/QtObservedAtom.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedAtom.hpp (modified) Extended QtObservedAtom by Name and Molecule. Fri, 12 Feb 2016 23:15:39 GMT Frederik Heber <heber@…> [ca1535] * src/UIElements/Qt4/QtMainWindow.cpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeItem.cpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeItem.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeItemFactory.cpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeItemFactory.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeList.cpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeList.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/SpecificItems/QtMoleculeItem_atomcount.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/SpecificItems/QtMoleculeItem_formula.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/SpecificItems/QtMoleculeItem_name.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/SpecificItems/QtMoleculeItem_occurrence.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/SpecificItems/QtMoleculeItem_visibility.hpp (modified) All QtMoleculeItem now heed QtObservedMolecule and QtMoleculeList ... Fri, 12 Feb 2016 23:15:39 GMT Frederik Heber <heber@…> [1b6415a] * src/UIElements/Qt4/InstanceBoard/QtObservedMolecule.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedMolecule.hpp (modified) Added AtomCount and FormulaChanged to QtObservedMolecule. Fri, 12 Feb 2016 23:15:24 GMT Frederik Heber <heber@…> [ab628c] * src/UIElements/Qt4/InstanceBoard/ObservedValue_wCallback.hpp (modified) FIX: ObservedValue_wCallback needs to call callback() only on last ... Fri, 12 Feb 2016 23:15:24 GMT Frederik Heber <heber@…> [68418e] * src/UIElements/Qt4/InstanceBoard/ObservedValuesContainer.hpp (modified) * src/UIElements/Qt4/InstanceBoard/ObservedValuesContainer_impl.hpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedAtom.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.hpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedMolecule.cpp (modified) ObservedValuesContainer now stores QtObserved.. instances directly. ... Fri, 12 Feb 2016 23:15:24 GMT Frederik Heber <heber@…> [90821d] * src/UIElements/Qt4/InstanceBoard/ObservedValuesContainer.hpp (modified) * src/UIElements/Qt4/InstanceBoard/ObservedValuesContainer_impl.hpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedAtom.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.hpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedMolecule.cpp (modified) Moved countSubjectKilled related code from QtObservedInstanceBoard ... Fri, 12 Feb 2016 23:15:24 GMT Frederik Heber <heber@…> [494478] * src/UIElements/Makefile.am (modified) * src/UIElements/Qt4/InstanceBoard/ObservedValue_UpdateAtoms.hpp (moved) * src/UIElements/Qt4/InstanceBoard/ObservedValue_wCallback.hpp (moved) * src/UIElements/Qt4/InstanceBoard/ObservedValuesContainer_impl.hpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedAtom.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.hpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedMolecule.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedMolecule.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_bond.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) Extracted all ObservedValue functionality out of ... Fri, 12 Feb 2016 23:15:23 GMT Frederik Heber <heber@…> [65c323] * src/UIElements/Qt4/InstanceBoard/ObservedValuesContainer.hpp (modified) * src/UIElements/Qt4/InstanceBoard/ObservedValuesContainer_impl.hpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedAtom.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedAtom.hpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) Extracted all ObservedValue functionality out of ... Fri, 12 Feb 2016 23:15:23 GMT Frederik Heber <heber@…> [41e287] * src/UIElements/Makefile.am (modified) * src/UIElements/Qt4/InstanceBoard/ObservedValuesContainer.hpp (added) * src/UIElements/Qt4/InstanceBoard/ObservedValuesContainer_impl.hpp (added) * src/UIElements/Qt4/InstanceBoard/QtObservedAtom.hpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.hpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedMolecule.hpp (modified) Extracted functions handling refcounting of ObservedValues into ... Fri, 12 Feb 2016 23:15:23 GMT Frederik Heber <heber@…> [98c35c] * src/UIElements/Makefile.am (modified) * src/UIElements/Qt4/InstanceBoard/ObservedValue_types.hpp (added) * src/UIElements/Qt4/InstanceBoard/QtObservedAtom.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedAtom.hpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.hpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedMolecule.cpp (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedMolecule.hpp (modified) Added rudimentary getter and returner for ObservedAtom/..Molecule() ... Fri, 12 Feb 2016 23:15:22 GMT Frederik Heber <heber@…> [0070aa] * src/UIElements/Makefile.am (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedAtom.cpp (added) * src/UIElements/Qt4/InstanceBoard/QtObservedAtom.hpp (added) * src/UIElements/Qt4/InstanceBoard/QtObservedMolecule.cpp (added) * src/UIElements/Qt4/InstanceBoard/QtObservedMolecule.hpp (added) Added QtObservedAtom and ..Molecule() instances. Fri, 12 Feb 2016 23:15:07 GMT Frederik Heber <heber@…> [2f7988] * src/UIElements/Makefile.am (modified) * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.cpp (moved) * src/UIElements/Qt4/InstanceBoard/QtObservedInstanceBoard.hpp (moved) * src/UIElements/Qt4/QtMainWindow.cpp (modified) * src/UIElements/Qt4/QtMainWindow.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_bond.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldView.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldView.hpp (modified) Moved and renamed QtInstanceInformationBoard -> ... Fri, 12 Feb 2016 23:15:07 GMT Frederik Heber <heber@…> [0f7ffe] * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldView.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldView.hpp (modified) Changed connections between GLWorldScene, GLWorldView and ... Fri, 12 Feb 2016 23:15:06 GMT Frederik Heber <heber@…> [8d5fbf1] * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_bond.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_bond.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) * src/UIElements/Views/Qt4/QtInstanceInformationBoard.cpp (modified) * src/UIElements/Views/Qt4/QtInstanceInformationBoard.hpp (modified) GLMoleculeObject_atom, _bond, _molecule all use ... Fri, 12 Feb 2016 23:15:06 GMT Frederik Heber <heber@…> [47f0e4] * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeItem.cpp (modified) FIX: QtMoleculeItem not signing off after subjectKilled(). Fri, 12 Feb 2016 23:15:06 GMT Frederik Heber <heber@…> [15c8a9] * src/UIElements/Makefile.am (modified) * src/UIElements/Qt4/QtMainWindow.cpp (modified) * src/UIElements/Qt4/QtMainWindow.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldView.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldView.hpp (modified) * src/UIElements/Views/Qt4/QtInstanceInformationBoard.cpp (added) * src/UIElements/Views/Qt4/QtInstanceInformationBoard.hpp (added) Added QtInstanceInformationBoard that handles ObservedValues through ... Fri, 12 Feb 2016 23:15:06 GMT Frederik Heber <heber@…> [026bef] * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_bond.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_bond.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldView.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/ObservedValue_UpdateAtoms.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/ObservedValue_wCallback.hpp (modified) Changed GLMoleculeObject_...:countSubjectKilled() to taking id ... Fri, 12 Feb 2016 23:15:05 GMT Frederik Heber <heber@…> [099f67] * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_bond.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_bond.hpp (modified) GLMoleculeObject_bond's ObservedValues is now all static. - again, ... Fri, 12 Feb 2016 23:15:05 GMT Frederik Heber <heber@…> [16bd37] * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.hpp (modified) GLMoleculeObject_atom's ObservedValues is now all static. - this is ... Fri, 12 Feb 2016 23:15:05 GMT Frederik Heber <heber@…> [8688ef] * src/UIElements/Makefile.am (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/ObservedValue_UpdateAtoms.hpp (added) GLMoleculeObject_molecule's ObservedValues is now all static. - ... Fri, 12 Feb 2016 23:15:05 GMT Frederik Heber <heber@…> [7a205a] * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) FIX: GLMoleculeObject_molecule::updateAtoms() used DisplayAtoms ... Fri, 12 Feb 2016 23:15:05 GMT Frederik Heber <heber@…> [2831b3] * src/UIElements/Views/Qt4/QtInfoBox.cpp (modified) FIX: QtInfoBox only updatePage() when ref still present (no ... Fri, 12 Feb 2016 23:15:04 GMT Frederik Heber <heber@…> [7c7c4a] * src/UIElements/Makefile.am (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_bond.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_bond.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldView.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/ObservedValue_wCallback.hpp (added) FIX: All ObservedValue's of GLMoleculeObject_atom/bond/molecule ... Fri, 12 Feb 2016 23:15:04 GMT Frederik Heber <heber@…> [e25448] * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) FIX: GLMoleculeObject_molecule::subjectKilled() should not call ... Fri, 12 Feb 2016 23:15:04 GMT Frederik Heber <heber@…> [7cf0eb] * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldView.cpp (modified) FIX: GLWorldScene has additional moleculePrepared... slots and ... Fri, 12 Feb 2016 23:15:04 GMT Frederik Heber <heber@…> [4ab5dc] * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) FIX: GLMoleculeObject_molecule still contained hack to get upper ... Fri, 12 Feb 2016 23:15:03 GMT Frederik Heber <heber@…> [b375e7] * src/UIElements/Qt4/QtUIFactory.cpp (modified) * src/UIElements/Views/Qt4/QtToolBar.hpp (modified) * src/UIElements/Views/Qt4/QtToolBar_QtFavoriteActions.cpp (modified) QtFavoriteActions uses ObservedValue for checking last queued ... Thu, 11 Feb 2016 08:07:11 GMT Frederik Heber <heber@…> [2affd1] * src/Actions/FillAction/FillRegularGridAction.cpp (modified) * src/Actions/FillAction/FillVolumeAction.cpp (modified) * src/Actions/FillAction/SuspendInMoleculeAction.cpp (modified) * src/Actions/GraphAction/UpdateMoleculesAction.cpp (modified) * src/Actions/MoleculeAction/BondFileAction.def (modified) * src/Actions/MoleculeAction/ChangeNameAction.def (modified) * src/Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.def (modified) * src/Actions/MoleculeAction/LoadAction.cpp (modified) * src/Actions/MoleculeAction/RotateAroundSelfByAngleAction.def (modified) * src/Actions/MoleculeAction/RotateToPrincipalAxisSystemAction.def (modified) * src/Actions/MoleculeAction/SaveAdjacencyAction.def (modified) * src/Actions/MoleculeAction/SaveBondsAction.def (modified) * src/Actions/MoleculeAction/SaveTemperatureAction.def (modified) * src/Actions/WorldAction/InputAction.cpp (modified) * src/Actions/WorldAction/RepeatBoxAction.cpp (modified) * src/Analysis/unittests/AnalysisCorrelationToPointUnitTest.cpp (modified) * src/Analysis/unittests/AnalysisCorrelationToPointUnitTest.hpp (modified) * src/Analysis/unittests/AnalysisCorrelationToSurfaceUnitTest.cpp (modified) * src/Analysis/unittests/AnalysisCorrelationToSurfaceUnitTest.hpp (modified) * src/Analysis/unittests/AnalysisPairCorrelationUnitTest.cpp (modified) * src/Analysis/unittests/AnalysisPairCorrelationUnitTest.hpp (modified) * src/Fragmentation/Exporters/ExportGraph.cpp (modified) * src/Fragmentation/Exporters/ExportGraph_ToFiles.cpp (modified) * src/Fragmentation/Exporters/ExportGraph_ToJobs.hpp (modified) * src/Graph/ConnectedSubgraph.cpp (modified) * src/Graph/DepthFirstSearchAnalysis.cpp (modified) * src/Parser/MpqcParser.cpp (modified) * src/Parser/PcpParser.cpp (modified) * src/Parser/PdbParser.cpp (modified) * src/Parser/Psi3Parser.cpp (modified) * src/Parser/TremoloParser.cpp (modified) * src/Parser/XmlParser.cpp (modified) * src/Parser/XyzParser.cpp (modified) * src/UIElements/TextUI/TextWindow.cpp (modified) * src/UIElements/TextUI/TextWindow.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeList.cpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeList.hpp (modified) * src/World.cpp (modified) * src/World.hpp (modified) * src/molecule.hpp (modified) Removed molecules_deprecated from World and unnecessary includes of ... Sun, 07 Feb 2016 05:57:03 GMT Frederik Heber <heber@…> [50c45f] * src/UIElements/Qt4/QtMainWindow.cpp (modified) FIX: Fitting domain to window on QtMainWindow's init. Tue, 02 Feb 2016 17:50:29 GMT Frederik Heber <heber@…> [3690e4] * src/Actions/FragmentationAction/AnalyseFragmentationResultsAction.cpp (modified) * src/Actions/FragmentationAction/FragmentationAction.cpp (modified) * src/Actions/FragmentationAction/FragmentationAutomationAction.cpp (modified) * src/Actions/FragmentationAction/FragmentationAutomationAction.def (modified) * src/Fragmentation/Automation/ResultContainer_impl.hpp (modified) * src/Fragmentation/Automation/VMGFragmentController.cpp (modified) * src/Fragmentation/Automation/VMGFragmentController.hpp (modified) * src/Fragmentation/Exporters/ExportGraph_ToJobs.cpp (modified) * src/Fragmentation/Interfragmenter.cpp (modified) * src/Fragmentation/Interfragmenter.hpp (modified) * src/Fragmentation/Makefile.am (modified) * src/Fragmentation/Summation/Containers/FragmentationLongRangeResults.cpp (modified) * src/Fragmentation/Summation/Containers/FragmentationLongRangeResults.hpp (modified) * src/Fragmentation/Summation/Containers/FragmentationShortRangeResults.cpp (modified) * src/Fragmentation/Summation/Containers/MPQCData.hpp (modified) * src/Fragmentation/Summation/Containers/MPQCDataFused.hpp (modified) * src/Fragmentation/Summation/Containers/VMGData.cpp (modified) * src/Fragmentation/Summation/Containers/VMGData.hpp (modified) * src/Fragmentation/Summation/Containers/VMGDataFused.hpp (modified) * src/Fragmentation/Summation/Containers/VMGDataMap.hpp (modified) * src/Fragmentation/Summation/Containers/VMGData_printKeyNames.hpp (modified) * src/Fragmentation/Summation/Converter/DataConverter.hpp (modified) * src/Fragmentation/Summation/Makefile.am (modified) * src/Fragmentation/Summation/SetValues/FragmentForces.cpp (added) * src/Fragmentation/Summation/SetValues/FragmentForces.hpp (added) * src/Fragmentation/Summation/SetValues/Makefile.am (modified) * src/Jobs/ChargeSmearer.cpp (added) * src/Jobs/ChargeSmearer.hpp (added) * src/Jobs/InterfaceVMGJob.cpp (modified) * src/Jobs/InterfaceVMGJob.hpp (modified) * src/Jobs/MPQCCommandJob.cpp (modified) * src/Jobs/Makefile.am (modified) * src/Jobs/VMGJob.cpp (modified) * src/Jobs/VMGJob.hpp (modified) * src/Jobs/WindowGrid_converter.cpp (modified) * src/Jobs/WindowGrid_converter.hpp (modified) * src/Makefile.am (modified) * src/UIElements/Makefile.am (modified) * src/UIElements/Views/Qt4/Plotting/Makefile.am (modified) * src/controller_MPQCCommandJob.cpp (modified) * tests/Python/AllActions/options.dat (modified) Merge branch 'Enhancing_Interdistance' into Candidate_v1.5.1 Sun, 31 Jan 2016 12:47:12 GMT Frederik Heber <heber@…> [d26fb7] * src/Actions/AtomAction/SaturateAction.cpp (modified) * src/Actions/WorldAction/SetBoundaryConditionsAction.def (modified) * src/Element/element.cpp (modified) * src/Element/elements_db.cpp (modified) * src/Element/unittests/ElementUnitTest.cpp (modified) * src/Fragmentation/Exporters/SaturatedBond.cpp (modified) * src/Parameters/Specifics/Value_element.cpp (modified) * src/Parameters/Specifics/Value_elements.cpp (modified) * src/Parser/MpqcParser.cpp (modified) * src/Parser/MpqcParser_Parameters.cpp (modified) * src/Parser/MpqcParser_Parameters.hpp (modified) * src/Parser/unittests/ParserMpqcUnitTest.cpp (modified) * src/UIElements/CommandLineUI/CommandLineParser.cpp (modified) * src/UIElements/CommandLineUI/Query/ElementCommandLineQuery.cpp (modified) * src/UIElements/CommandLineUI/Query/ElementsCommandLineQuery.cpp (modified) * tests/regression/Atoms/Add/post/test.in (modified) * tests/regression/Atoms/Remove/post/test.in (modified) * tests/regression/Atoms/Saturate/post/saturated_carbon.xyz (modified) * tests/regression/Atoms/Saturate/post/saturated_nitrogen.xyz (modified) * tests/regression/Parser/Mpqc/post/doublewater.in (modified) * tests/regression/Parser/Mpqc/post/empty.in (modified) * tests/regression/Parser/Mpqc/post/test.in (modified) * tests/regression/Parser/Mpqc/post/testCLHF.in (modified) * tests/regression/Parser/Mpqc/post/testCLKS.in (modified) * tests/regression/Parser/Mpqc/post/testMBPT2.in (modified) * tests/regression/Parser/Mpqc/post/testMBPT2_R12.in (modified) * tests/regression/Parser/Mpqc/pre/testCLHF.in (modified) * tests/regression/Parser/Mpqc/pre/testCLHF_n.in (modified) * tests/regression/Parser/Mpqc/pre/testCLHF_n_ascend_ids.in (modified) * tests/regression/Parser/Mpqc/pre/testCLHF_n_mixed_ids.in (modified) * tests/regression/Parser/Mpqc/pre/testCLKS.in (modified) * tests/regression/Parser/Mpqc/pre/testMBPT2.in (modified) * tests/regression/Parser/Mpqc/pre/testMBPT2_R12.in (modified) * tests/regression/Parser/Mpqc/pre/water.in (modified) * tests/regression/Parser/SetParameters/Mpqc/post/testCLHF.in (modified) * tests/regression/Parser/SetParameters/Mpqc/pre/testCLHF.in (modified) Merge branch 'Better_HBondDistances' into Candidate_v1.5.1 Sun, 31 Jan 2016 12:43:17 GMT Frederik Heber <heber@…> [e39e7a] * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.hpp (modified) * src/molecule.cpp (modified) * src/molecule.hpp (modified) Implemented more efficient per-molecule bounding box information. - ... Sun, 11 Oct 2015 07:11:38 GMT Frederik Heber <heber@…> [2f429e] * src/Parameters/Specifics/Value_element.cpp (modified) * src/Parameters/Specifics/Value_elements.cpp (modified) * src/UIElements/CommandLineUI/CommandLineParser.cpp (modified) * src/UIElements/CommandLineUI/Query/ElementCommandLineQuery.cpp (modified) * src/UIElements/CommandLineUI/Query/ElementsCommandLineQuery.cpp (modified) Elements are now parsed as string (and tried for being int). - this ... Sun, 11 Oct 2015 07:11:15 GMT Frederik Heber <heber@…> [c20839] * src/Fragmentation/Makefile.am (modified) * src/Fragmentation/Summation/Makefile.am (modified) * src/Jobs/Makefile.am (modified) * src/Makefile.am (modified) * src/UIElements/Makefile.am (modified) * src/UIElements/Views/Qt4/Plotting/Makefile.am (modified) FIX: Shared libraries's Makefile.am rules are now consistent. - ... Thu, 13 Aug 2015 21:52:27 GMT Frederik Heber <heber@…> [5284ff] * src/UIElements/Qt4/QtUIFactory.cpp (modified) FIX: This prevent crash of molecuildergui in debian package. - ... Wed, 05 Aug 2015 17:32:13 GMT Frederik Heber <heber@…> [6fe4f7] * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.hpp (modified) FIX: updateBoundingBox() must not call molecule::getBoundingBox() on ... Wed, 05 Aug 2015 17:32:13 GMT Frederik Heber <heber@…> [ec8471] * src/UIElements/Makefile.am (modified) * src/UIElements/Qt4/QtMainWindow.cpp (modified) * src/UIElements/Views/Qt4/QDebugStream.hpp (modified) * src/UIElements/Views/Qt4/QtLogBox.cpp (modified) * src/UIElements/Views/Qt4/QtLogBox.hpp (modified) FIX: QtLogBox is again included and working thread-safe. - ... Wed, 05 Aug 2015 17:32:13 GMT Frederik Heber <heber@…> [7e2adc] * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_bond.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_bond.hpp (modified) FIX: GLMoleculeObject_bond had both flipped ids and the side. - in ... Wed, 05 Aug 2015 17:32:12 GMT Frederik Heber <heber@…> [a9161d] * src/UIElements/Views/Qt4/Qt3D/GLWorldView.cpp (modified) * src/UIElements/Views/Qt4/QtShapeList.cpp (modified) FIX: GLWorldView and QtShapeList do not assert single source in ... Wed, 05 Aug 2015 17:32:12 GMT Frederik Heber <heber@…> [07136a] * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_shape.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_shape.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldView.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldView.hpp (modified) FIX: Fixing display of shapes in GLWorldView. - we propagate shape ... Wed, 05 Aug 2015 17:32:12 GMT Frederik Heber <heber@…> [369cb1] * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) GLWorldScene lacked assert of Walker in atomClicked(). Wed, 05 Aug 2015 17:32:12 GMT Frederik Heber <heber@…> [92ee41] * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) Asserted that GLMoleculeObject_molecule::update() is never called. Wed, 05 Aug 2015 17:32:12 GMT Frederik Heber <heber@…> [ca4b63b] * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.hpp (modified) AddAtomBonds() now uses just id not ptr as param. Wed, 05 Aug 2015 17:32:11 GMT Frederik Heber <heber@…> [68989c] * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeList.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) Avoided use of getId() on molecules and atoms in Qt code where ... Wed, 05 Aug 2015 17:32:11 GMT Frederik Heber <heber@…> [25a81d] * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) GLMoleculeObject_molecule does not use getAtomCount() anymore. - ... Wed, 05 Aug 2015 17:32:11 GMT Frederik Heber <heber@…> [5b61e5] * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.hpp (modified) GLMoleculeObject_molecule also has ObservedValue for name. - this ... Wed, 05 Aug 2015 17:32:11 GMT Frederik Heber <heber@…> [07b800] * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeList.cpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeList.hpp (modified) FIX: Setting molecule's name via QtMoleculeList item is again ... Wed, 05 Aug 2015 17:32:11 GMT Frederik Heber <heber@…> [a39d72] * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeList.cpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeList.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeListView.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) Fixed formula usage in Qt part of code. - formula of a molecule is ... Wed, 05 Aug 2015 17:32:11 GMT Frederik Heber <heber@…> [015f8c] * src/UIElements/Qt4/QtMainWindow.cpp (modified) * src/UIElements/Qt4/QtMainWindow.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeList.cpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeList.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeListView.cpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeListView.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldView.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldView.hpp (modified) QtMainWindow uses QtSelectionChangedAgent. - QtMoleculeListView and ... Wed, 05 Aug 2015 17:32:11 GMT Frederik Heber <heber@…> [e5a477] * src/UIElements/Makefile.am (modified) * src/UIElements/Views/Qt4/QtSelectionChangedAgent.cpp (added) * src/UIElements/Views/Qt4/QtSelectionChangedAgent.hpp (added) Added QtSelectionChangedAgent to transform O/O to S/S system. - ... Wed, 05 Aug 2015 17:32:10 GMT Frederik Heber <heber@…> [cc2976] * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeItem.cpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeItem.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeItemFactory.cpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeItemFactory.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeList.cpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeList.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/SpecificItems/QtMoleculeItem_atomcount.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/SpecificItems/QtMoleculeItem_formula.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/SpecificItems/QtMoleculeItem_name.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/SpecificItems/QtMoleculeItem_occurrence.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/SpecificItems/QtMoleculeItem_visibility.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) QtMoleculeItem_.. now shout when they receive subjectKilled(). - ... Wed, 05 Aug 2015 17:32:10 GMT Frederik Heber <heber@…> [b9680b] * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeItem.cpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeItem.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/SpecificItems/QtMoleculeItem_atomcount.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/SpecificItems/QtMoleculeItem_formula.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/SpecificItems/QtMoleculeItem_name.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/SpecificItems/QtMoleculeItem_occurrence.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/SpecificItems/QtMoleculeItem_visibility.hpp (modified) FIX: Fixing "pure virtual function called" in QtMoleculeItem. - as ... Wed, 05 Aug 2015 17:32:10 GMT Frederik Heber <heber@…> [54bdaa] * src/Parser/FormatParser_common.cpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeList.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldView.cpp (modified) Qt4 instance use new lastChanged..Id() in place of lastChanged(). - ... Wed, 05 Aug 2015 17:32:09 GMT Frederik Heber <heber@…> [f714763] * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldView.cpp (modified) GLWorldView no longer listens to WorldTime::TimeChanged. - ... Wed, 05 Aug 2015 17:32:09 GMT Frederik Heber <heber@…> [3d5b5b] * src/UIElements/Views/Qt4/Qt3D/GLWorldView.cpp (modified) GLWorldView does not emit changed() on each general update() from the ... Wed, 05 Aug 2015 17:32:09 GMT Frederik Heber <heber@…> [fcdf05] * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeItem.cpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeItem.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeItemFactory.cpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeItemFactory.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeList.cpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeList.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeListView.cpp (modified) * src/UIElements/Views/Qt4/MoleculeList/SpecificItems/QtMoleculeItem_atomcount.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/SpecificItems/QtMoleculeItem_formula.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/SpecificItems/QtMoleculeItem_name.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/SpecificItems/QtMoleculeItem_occurrence.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/SpecificItems/QtMoleculeItem_visibility.hpp (modified) * src/UIElements/Views/Qt4/QtElementList.hpp (modified) Fixing QtMoleculeList with list containing only formulas and ids. - ... Wed, 05 Aug 2015 17:32:08 GMT Frederik Heber <heber@…> [95f49f] * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeList.cpp (modified) QtMoleculeList::informDirtyState() does not need to lock refill_mutex ... Wed, 05 Aug 2015 17:32:08 GMT Frederik Heber <heber@…> [88846b] * src/UIElements/Views/Qt4/QtElementList.cpp (modified) Fixing QtElementList::updateElement(). Wed, 05 Aug 2015 17:32:08 GMT Frederik Heber <heber@…> [20f9b5] * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldView.cpp (modified) GLWorldScene propagates changed mol id to GLMoleculeObject_molecule. ... Wed, 05 Aug 2015 17:32:08 GMT Frederik Heber <heber@…> [6c16a0] * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.hpp (modified) GLMoleculeObject_molecule uses ObservedValue for internally ... Wed, 05 Aug 2015 17:32:08 GMT Frederik Heber <heber@…> [3e52834] * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeItem.cpp (modified) * src/UIElements/Views/Qt4/MoleculeList/QtMoleculeItem.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/SpecificItems/QtMoleculeItem_atomcount.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/SpecificItems/QtMoleculeItem_formula.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/SpecificItems/QtMoleculeItem_name.hpp (modified) * src/UIElements/Views/Qt4/MoleculeList/SpecificItems/QtMoleculeItem_visibility.hpp (modified) QtMoleculeItem_... use ObservedValue for internally representing ...