# # ChangeLog for configure.ac # # Generated by Trac 1.4.4 # Jan 16, 2025, 3:16:58 AM Wed, 27 Feb 2013 12:40:25 GMT Frederik Heber [1edc87] * configure.ac (modified) Set version to 1.3.12. - MoleCuilder library is now 11:3:1. - ... Sun, 24 Feb 2013 13:00:40 GMT Frederik Heber [6cfb355] * configure.ac (modified) Set version to 1.3.11. - MoleCuilder library is now 11:2:1. - ... Sat, 23 Feb 2013 16:24:27 GMT Frederik Heber [d3f032] * configure.ac (modified) Set version to 1.3.10. - MoleCuilder library is now 11:1:1. - ... Wed, 13 Feb 2013 15:47:46 GMT Frederik Heber [d5b458] * configure.ac (modified) * m4/ax_codepatterns.m4 (modified) FIX: ax_codepatterns.m4 was broken w.r.t to debug lib. - fixed in ... Thu, 20 Dec 2012 09:44:30 GMT Frederik Heber [d6b6ce] * configure.ac (modified) Set version to 1.3.9. - Molecuilder library is now 11:0:0. - ... Wed, 19 Dec 2012 15:25:03 GMT Frederik Heber [f06d52] * configure.ac (modified) * m4/ax_blas.m4 (added) * m4/ax_lapack.m4 (added) * src/LevMartester.cpp (added) * src/Makefile.am (modified) Added LevMartester that employs levmar package for non-linear ... Fri, 14 Dec 2012 17:40:29 GMT Frederik Heber [da5b82] * configure.ac (modified) Set version to 1.3.8. - Molecuilder library is now 10:3:0. - ... Fri, 14 Dec 2012 14:29:45 GMT Frederik Heber [0cfc27] * LinearAlgebra/configure.ac (modified) * LinearAlgebra/src/unittests/Makefile.am (modified) * configure.ac (modified) * src/unittests/Makefile.am (modified) If no CPPUNIT is found, compilation of unit tests is disabled. - ... Fri, 14 Dec 2012 11:03:46 GMT Frederik Heber [c8f12e] * configure.ac (modified) Set version to 1.3.7 - Codename "Fine structure constant" (the fine ... Mon, 10 Dec 2012 10:11:00 GMT Frederik Heber [e33bac] * configure.ac (modified) Set version to 1.3.6. - Codename "Triangular numbers" (The sequence ... Tue, 20 Nov 2012 13:00:14 GMT Frederik Heber [a22e05] * configure.ac (modified) Set version to 1.3.5. - Codename "Tongue" (Radical 135 of Kangxi ... Tue, 20 Nov 2012 11:04:12 GMT Frederik Heber [36bb2d] * configure.ac (modified) * m4/lx_find_mpi.m4 (added) * src/Actions/FragmentationAction/FragmentationAutomationAction.cpp (modified) * src/Actions/FragmentationAction/FragmentationAutomationAction.def (modified) * src/Fragmentation/KeySetsContainer.cpp (modified) * src/Fragmentation/KeySetsContainer.hpp (modified) * src/Fragmentation/SetValues/Histogram.cpp (modified) * src/Fragmentation/SetValues/Histogram.hpp (modified) * src/Fragmentation/SetValues/IndexedVectors.cpp (modified) * src/Fragmentation/SetValues/IndexedVectors.hpp (modified) * src/Fragmentation/SetValues/unittests/IndexedVectorsUnitTest.cpp (modified) * src/Fragmentation/SetValues/unittests/IndexedVectorsUnitTest.hpp (modified) * src/Fragmentation/Summation/AllLevelOrthogonalSummator.hpp (added) * src/Fragmentation/Summation/AllLevelSummator.hpp (moved) * src/Fragmentation/Summation/HeaderPrinter.hpp (added) * src/Fragmentation/Summation/IndexSetContainer.cpp (added) * src/Fragmentation/Summation/IndexSetContainer.hpp (modified) * src/Fragmentation/Summation/Makefile.am (modified) * src/Fragmentation/Summation/OrthogonalSummation.hpp (modified) * src/Fragmentation/Summation/OrthogonalSummation_impl.hpp (modified) * src/Fragmentation/Summation/OrthogonalSummator.hpp (added) * src/Fragmentation/Summation/SetValue.hpp (modified) * src/Fragmentation/Summation/SubsetMap.cpp (modified) * src/Fragmentation/Summation/SubsetMap.hpp (modified) * src/Fragmentation/Summation/Summation.hpp (added) * src/Fragmentation/Summation/Summation_impl.hpp (added) * src/Fragmentation/Summation/Summator.hpp (modified) * src/Fragmentation/Summation/ValuePrinter.hpp (added) * src/Fragmentation/Summation/ZeroInstance.hpp (added) * src/Fragmentation/Summation/unittests/IndexSetContainerUnitTest.cpp (modified) * src/Fragmentation/Summation/unittests/IndexSetContainerUnitTest.hpp (modified) * src/Fragmentation/Summation/unittests/Makefile.am (modified) * src/Fragmentation/Summation/unittests/OrthogonalSummationUnitTest.cpp (modified) * src/Fragmentation/Summation/unittests/SubsetMapUnitTest.cpp (modified) * src/Fragmentation/Summation/unittests/SubsetMapUnitTest.hpp (modified) * src/Fragmentation/Summation/unittests/SummationUnitTest.cpp (added) * src/Fragmentation/Summation/unittests/SummationUnitTest.hpp (added) * src/Fragmentation/Summation/writeTable.hpp (added) * src/Fragmentation/analyzer.cpp (modified) * src/Fragmentation/joiner.cpp (modified) * src/Jobs/Grid/Makefile.am (added) * src/Jobs/Grid/SamplingGrid.cpp (added) * src/Jobs/Grid/SamplingGrid.hpp (added) * src/Jobs/Grid/SamplingGridProperties.cpp (added) * src/Jobs/Grid/SamplingGridProperties.hpp (added) * src/Jobs/Grid/unittests/Makefile.am (added) * src/Jobs/Grid/unittests/SamplingGridPropertiesUnitTest.cpp (added) * src/Jobs/Grid/unittests/SamplingGridPropertiesUnitTest.hpp (added) * src/Jobs/Grid/unittests/SamplingGridUnitTest.cpp (added) * src/Jobs/Grid/unittests/SamplingGridUnitTest.hpp (added) * src/Jobs/InterfaceVMGJob.cpp (added) * src/Jobs/InterfaceVMGJob.hpp (added) * src/Jobs/MPQCData.cpp (modified) * src/Jobs/MPQCData.hpp (modified) * src/Jobs/MPQCDataFused.hpp (modified) * src/Jobs/MPQCDataMap.hpp (modified) * src/Jobs/MPQCData_printKeyNames.hpp (modified) * src/Jobs/MPQCJob.cpp (modified) * src/Jobs/MPQCJob.hpp (modified) * src/Jobs/Makefile.am (modified) * src/Jobs/VMGData.cpp (added) * src/Jobs/VMGData.hpp (added) * src/Jobs/VMGJob.cpp (added) * src/Jobs/VMGJob.hpp (added) * src/Makefile.am (modified) * src/controller_MPQCCommandJob.cpp (modified) * src/unittests/Makefile.am (modified) * tests/Python/AllActions/options.dat (modified) Merge branch 'VMGJob_SamplingNucleiCharges' into Candidate_v1.3.5 Tue, 20 Nov 2012 09:44:22 GMT Frederik Heber [cebac0] * configure.ac (modified) Set version to 1.3.4. - Codename "Cymdeithas Rheilffordd Eryri" ... Tue, 20 Nov 2012 08:34:10 GMT Frederik Heber [d5307b] * Makefile.am (modified) * configure.ac (modified) * data/Makefile.am (deleted) * data/icons/Makefile.am (modified) * data/icons/icons.qrc (moved) * src/UIElements/Makefile.am (modified) * src/UIElements/Qt4/QtMainWindow.cpp (modified) DISTFIX: new logo files were not in EXTRA_DIST. - renamed logos.qrc ... Mon, 19 Nov 2012 10:27:51 GMT Frederik Heber [d61161] * Makefile.am (modified) * configure.ac (modified) * data/Makefile.am (added) * data/icons/Makefile.am (added) * data/icons/icon_select_atom.png (added) * data/icons/icon_select_atom.svg (added) * data/icons/icon_select_molecule.png (added) * data/icons/icon_select_molecule.svg (added) * data/icons/icon_view_stereo.png (added) * data/icons/icon_view_stereo.svg (added) * data/icons/logos.qrc (added) * src/Actions/FillAction/FillSurfaceAction.cpp (moved) * src/Actions/FillAction/FillSurfaceAction.def (moved) * src/Actions/FillAction/FillSurfaceAction.hpp (moved) * src/Actions/GlobalListOfActions.hpp (modified) * src/Actions/Makefile.am (modified) * src/Actions/SelectionAction/Atoms/AllAtomsInsideCuboidAction.cpp (deleted) * src/Actions/SelectionAction/Atoms/AllAtomsInsideCuboidAction.def (deleted) * src/Actions/SelectionAction/Atoms/AllAtomsInsideCuboidAction.hpp (deleted) * src/Actions/SelectionAction/Atoms/AllAtomsInsideSphereAction.def (deleted) * src/Actions/SelectionAction/Atoms/AllAtomsInsideSphereAction.hpp (deleted) * src/Actions/SelectionAction/Atoms/AllAtomsInsideVolumeAction.cpp (moved) * src/Actions/SelectionAction/Atoms/AllAtomsInsideVolumeAction.def (added) * src/Actions/SelectionAction/Atoms/AllAtomsInsideVolumeAction.hpp (added) * src/Actions/SelectionAction/Atoms/NotAllAtomsInsideCuboidAction.cpp (deleted) * src/Actions/SelectionAction/Atoms/NotAllAtomsInsideCuboidAction.def (deleted) * src/Actions/SelectionAction/Atoms/NotAllAtomsInsideCuboidAction.hpp (deleted) * src/Actions/SelectionAction/Atoms/NotAllAtomsInsideSphereAction.def (deleted) * src/Actions/SelectionAction/Atoms/NotAllAtomsInsideSphereAction.hpp (deleted) * src/Actions/SelectionAction/Atoms/NotAllAtomsInsideVolumeAction.cpp (moved) * src/Actions/SelectionAction/Atoms/NotAllAtomsInsideVolumeAction.def (added) * src/Actions/SelectionAction/Atoms/NotAllAtomsInsideVolumeAction.hpp (added) * src/Actions/SelectionAction/Shapes/AllShapesAction.cpp (added) * src/Actions/SelectionAction/Shapes/AllShapesAction.def (added) * src/Actions/SelectionAction/Shapes/AllShapesAction.hpp (added) * src/Actions/SelectionAction/Shapes/NotAllShapesAction.cpp (added) * src/Actions/SelectionAction/Shapes/NotAllShapesAction.def (added) * src/Actions/SelectionAction/Shapes/NotAllShapesAction.hpp (added) * src/Actions/SelectionAction/Shapes/NotShapeByNameAction.cpp (added) * src/Actions/SelectionAction/Shapes/NotShapeByNameAction.def (added) * src/Actions/SelectionAction/Shapes/NotShapeByNameAction.hpp (added) * src/Actions/SelectionAction/Shapes/ShapeByNameAction.cpp (added) * src/Actions/SelectionAction/Shapes/ShapeByNameAction.def (added) * src/Actions/SelectionAction/Shapes/ShapeByNameAction.hpp (added) * src/Actions/ShapeAction/CombineShapesAction.cpp (added) * src/Actions/ShapeAction/CombineShapesAction.def (added) * src/Actions/ShapeAction/CombineShapesAction.hpp (added) * src/Actions/ShapeAction/CreateShapeAction.cpp (added) * src/Actions/ShapeAction/CreateShapeAction.def (added) * src/Actions/ShapeAction/CreateShapeAction.hpp (added) * src/Actions/ShapeAction/RemoveShapeAction.cpp (added) * src/Actions/ShapeAction/RemoveShapeAction.def (added) * src/Actions/ShapeAction/RemoveShapeAction.hpp (added) * src/Makefile.am (modified) * src/Parameters/Makefile.am (modified) * src/Parameters/Validators/DiscreteValidator.hpp (modified) * src/Parameters/Validators/Ops_Validator_impl.hpp (modified) * src/Parameters/Validators/STLVectorValidator.hpp (modified) * src/Parameters/Validators/Specific/BoundaryConditionValidator.cpp (modified) * src/Parameters/Validators/Specific/BoundaryConditionValidator.hpp (modified) * src/Parameters/Validators/Specific/ParserTypeValidator.cpp (modified) * src/Parameters/Validators/Specific/ParserTypeValidator.hpp (modified) * src/Parameters/Validators/Specific/RandomNumberValidators.cpp (modified) * src/Parameters/Validators/Specific/RandomNumberValidators.hpp (modified) * src/Parameters/Validators/Specific/ShapeNameValidator.cpp (added) * src/Parameters/Validators/Specific/ShapeNameValidator.hpp (added) * src/Parameters/Validators/Specific/ShapeOpValidator.cpp (added) * src/Parameters/Validators/Specific/ShapeOpValidator.hpp (added) * src/Parameters/Validators/Specific/ShapeTypeValidator.cpp (added) * src/Parameters/Validators/Specific/ShapeTypeValidator.hpp (added) * src/Shapes/BaseShapes.cpp (modified) * src/Shapes/Makefile.am (modified) * src/Shapes/Shape.cpp (modified) * src/Shapes/Shape.hpp (modified) * src/Shapes/ShapeFactory.cpp (added) * src/Shapes/ShapeFactory.hpp (added) * src/Shapes/ShapeRegistry.cpp (added) * src/Shapes/ShapeRegistry.hpp (added) * src/Shapes/ShapeType.hpp (modified) * src/Shapes/unittests/Makefile.am (modified) * src/Shapes/unittests/ShapeFactoryUnitTest.cpp (added) * src/Shapes/unittests/ShapeFactoryUnitTest.hpp (added) * src/Shapes/unittests/ShapeRegistryUnitTest.cpp (added) * src/Shapes/unittests/ShapeRegistryUnitTest.hpp (added) * src/UIElements/CommandLineUI/CommandLineParser.cpp (modified) * src/UIElements/CommandLineUI/CommandLineParser.hpp (modified) * src/UIElements/Makefile.am (modified) * src/UIElements/Menu/MenuDescription.cpp (modified) * src/UIElements/Qt4/QtMainWindow.cpp (modified) * src/UIElements/Qt4/QtMainWindow.hpp (modified) * src/UIElements/Qt4/Query/AtomsQtQuery.cpp (modified) * src/UIElements/Qt4/Query/DoublesQtQuery.cpp (modified) * src/UIElements/Qt4/Query/ElementsQtQuery.cpp (modified) * src/UIElements/Qt4/Query/FilesQtQuery.cpp (modified) * src/UIElements/Qt4/Query/IntsQtQuery.cpp (modified) * src/UIElements/Qt4/Query/MoleculesQtQuery.cpp (modified) * src/UIElements/Qt4/Query/QtQuery.hpp (modified) * src/UIElements/Qt4/Query/QtQueryList.hpp (modified) * src/UIElements/Qt4/Query/StringQtQuery.cpp (modified) * src/UIElements/Qt4/Query/StringsQtQuery.cpp (modified) * src/UIElements/Qt4/Query/UnsignedIntQtQuery.cpp (modified) * src/UIElements/Qt4/Query/UnsignedIntsQtQuery.cpp (modified) * src/UIElements/Qt4/Query/VectorsQtQuery.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_shape.cpp (added) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_shape.hpp (added) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldView.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldView.hpp (modified) * src/UIElements/Views/Qt4/QtInfoBox.cpp (modified) * src/UIElements/Views/Qt4/QtShapeController.cpp (added) * src/UIElements/Views/Qt4/QtShapeController.hpp (added) * src/UIElements/Views/Qt4/QtShapeList.cpp (added) * src/UIElements/Views/Qt4/QtShapeList.hpp (added) * src/cleanUp.cpp (modified) * tests/Python/AllActions/options.dat (modified) * tests/regression/Analysis/DipoleCorrelation-DiscreteAngles/testsuite-analysis-dipole-correlation-discrete-angles.at (modified) * tests/regression/Atoms/RemoveCuboid/testsuite-atoms-remove-cuboid.at (modified) * tests/regression/Atoms/RemoveSphere/testsuite-atoms-remove-sphere.at (modified) * tests/regression/Filling/SphericalSurface/testsuite-molecules-fill-spherical-surface.at (modified) * tests/regression/Selection/Atoms/AtomsInsideCuboid/testsuite-selection-select-atoms-inside-cuboid-with-defaults.at (modified) * tests/regression/Selection/Atoms/AtomsInsideCuboid/testsuite-selection-select-atoms-inside-cuboid.at (modified) * tests/regression/Selection/Atoms/AtomsInsideCuboid/testsuite-selection-unselect-atoms-inside-cuboid.at (modified) * tests/regression/Selection/Atoms/AtomsInsideSphere/testsuite-selection-select-atoms-inside-sphere.at (modified) * tests/regression/Selection/Atoms/AtomsInsideSphere/testsuite-selection-select-atoms-inside-tiny-sphere.at (modified) * tests/regression/Selection/Atoms/AtomsInsideSphere/testsuite-selection-unselect-atoms-inside-sphere.at (modified) * tests/regression/Selection/Atoms/AtomsInsideSphere/testsuite-selection-unselect-atoms-inside-tiny-sphere.at (modified) Merge branch 'michi-list-query-validator' into stable Fri, 16 Nov 2012 11:10:57 GMT Frederik Heber [5b991a] * Makefile.am (modified) * configure.ac (modified) * data/Makefile.am (added) * data/icons/Makefile.am (added) * data/icons/logos.qrc (added) * src/Makefile.am (modified) * src/UIElements/Makefile.am (modified) * src/UIElements/Qt4/QtMainWindow.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldView.cpp (modified) compile icons into the executable Wed, 14 Nov 2012 10:01:46 GMT Frederik Heber [69c733] * configure.ac (modified) * src/Actions/FragmentationAction/FragmentationAutomationAction.cpp (modified) * src/Actions/FragmentationAction/FragmentationAutomationAction.def (modified) * tests/Python/AllActions/options.dat (modified) Added second part to FragmentationAutomationAction that calculates ... Tue, 13 Nov 2012 11:11:59 GMT Frederik Heber [8a8c8c] * configure.ac (modified) * m4/lx_find_mpi.m4 (added) * src/Jobs/Makefile.am (modified) * src/Jobs/VMGJob.cpp (modified) Using CommMPI in VMGJob now. - this is used instead of CommSerial ... Tue, 13 Nov 2012 10:23:13 GMT Frederik Heber [d2a0f6d] * configure.ac (modified) * src/Jobs/Makefile.am (modified) * src/Jobs/VMGJob.cpp (added) * src/Jobs/VMGJob.hpp (added) VMGJob can now be conditionally compiled in via --with-vmg. - ... Tue, 13 Nov 2012 10:05:16 GMT Frederik Heber [286a967] * configure.ac (modified) Set version to 1.3.3. - Codename "Last Discovery" (STS-133 is the ... Thu, 08 Nov 2012 13:13:53 GMT Frederik Heber [619a0e] * configure.ac (modified) * m4/boost.m4 (modified) Added checks for boost::fusion and boost::mpl. - wrote simple ... Thu, 08 Nov 2012 13:13:50 GMT Frederik Heber [e920061] * Makefile.am (modified) * configure.ac (modified) * src/Fragmentation/Summation/Makefile.am (modified) * src/Fragmentation/Summation/unittests/Makefile.am (modified) * src/Makefile.am (modified) * src/UIElements/Makefile.am (modified) * src/unittests/Makefile.am (modified) libMolecuilderFagmentationSummation is now just a normal convenience ... Mon, 29 Oct 2012 09:10:02 GMT Frederik Heber [146c26d] * Makefile.am (modified) * configure.ac (modified) * src/Fragmentation/Summation/IndexSet.cpp (added) * src/Fragmentation/Summation/IndexSet.hpp (added) * src/Fragmentation/Summation/Makefile.am (added) * src/Fragmentation/Summation/unittests/IndexSetUnitTest.cpp (added) * src/Fragmentation/Summation/unittests/IndexSetUnitTest.hpp (added) * src/Fragmentation/Summation/unittests/Makefile.am (added) Added class IndexSet and unit test. - IndexSet contains the set of ... Fri, 26 Oct 2012 13:11:19 GMT Frederik Heber [dbe3b9] * configure.ac (modified) Set version to 1.3.2. - Molecuilder library is now 10:2:0. - ... Wed, 26 Sep 2012 17:24:47 GMT Frederik Heber [b1b413] * configure.ac (modified) FIX: Removed AC_PROG_CC from configure.ac - we don't need C bindings. Wed, 26 Sep 2012 17:24:47 GMT Frederik Heber [856d05] * configure.ac (modified) * m4/ax_jobmarket.m4 (modified) * src/ControllerOptions_MPQCCommandJob.cpp (modified) * src/ControllerOptions_MPQCCommandJob.hpp (modified) * src/Parser/XmlParser.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_bond.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldView.cpp (modified) * src/cleanUp.cpp (modified) * src/controller_MPQCCommandJob.cpp (modified) * src/controller_MPQCCommandJob.hpp (modified) * tests/JobMarket/Makefile.am (modified) * tests/JobMarket/testsuite-jobmarket-mpqc-jobs.at (modified) MEMFIX: Added WorldTime and ObserverLog ::purgeInstance() calls. - ... Fri, 10 Aug 2012 15:56:44 GMT Frederik Heber [d0f3ba] * configure.ac (modified) Set version to 1.3.1. - Molecuilder library is now 10:1:0. - ... Thu, 12 Jul 2012 11:52:55 GMT Frederik Heber [511645] * configure.ac (modified) Set version to 1.3.0. - Molecuilder library is now 10:0:0. - ... Wed, 11 Jul 2012 13:02:17 GMT Frederik Heber [bd81f9] * configure.ac (modified) * m4/ax_jobmarket.m4 (added) * src/Actions/FragmentationAction/FragmentationAutomationAction.cpp (added) * src/Actions/FragmentationAction/FragmentationAutomationAction.def (added) * src/Actions/FragmentationAction/FragmentationAutomationAction.hpp (added) * src/Actions/GlobalListOfActions.hpp (modified) * src/Actions/Makefile.am (modified) * src/Actions/unittests/stubs/DummyUI.hpp (modified) * src/Atom/atom_observable.cpp (modified) * src/ControllerOptions_MPQCCommandJob.cpp (added) * src/ControllerOptions_MPQCCommandJob.hpp (added) * src/Fragmentation/MatrixContainer.cpp (modified) * src/Fragmentation/MatrixContainer.hpp (modified) * src/Jobs/MPQCCommandJob.cpp (added) * src/Jobs/MPQCCommandJob.hpp (added) * src/Jobs/MPQCCommandJob_MPQCData.cpp (added) * src/Jobs/MPQCCommandJob_MPQCData.hpp (added) * src/Jobs/Makefile.am (added) * src/Jobs/unittests/MPQCCommandJobUnitTest.cpp (added) * src/Jobs/unittests/MPQCCommandJobUnitTest.hpp (added) * src/Jobs/unittests/MPQCDataUnitTest.cpp (added) * src/Jobs/unittests/MPQCDataUnitTest.hpp (added) * src/Jobs/unittests/Makefile.am (added) * src/Makefile.am (modified) * src/Server.cpp (added) * src/Tesselation/unittests/Tesselation_BoundaryTriangleUnitTest.cpp (modified) * src/Tesselation/unittests/Tesselation_BoundaryTriangleUnitTest.hpp (modified) * src/UIElements/CommandLineUI/CommandLineDialog.cpp (modified) * src/UIElements/CommandLineUI/CommandLineDialog.hpp (modified) * src/UIElements/CommandLineUI/Query/CommandLineQuery.hpp (modified) * src/UIElements/CommandLineUI/Query/FilesCommandLineQuery.cpp (added) * src/UIElements/Dialog.cpp (modified) * src/UIElements/Dialog.hpp (modified) * src/UIElements/Makefile.am (modified) * src/UIElements/Qt4/QtDialog.cpp (modified) * src/UIElements/Qt4/QtDialog.hpp (modified) * src/UIElements/Qt4/Query/FilesQtQuery.cpp (added) * src/UIElements/Qt4/Query/QtQuery.hpp (modified) * src/UIElements/Query/FilesQuery.cpp (added) * src/UIElements/TextUI/Query/FileTextQuery.cpp (modified) * src/UIElements/TextUI/Query/FilesTextQuery.cpp (added) * src/UIElements/TextUI/Query/TextQuery.hpp (modified) * src/UIElements/TextUI/TextDialog.cpp (modified) * src/UIElements/TextUI/TextDialog.hpp (modified) * src/controller.cpp (added) * src/controller_AddOn_MPQCCommandJob.cpp (added) * src/controller_MPQCCommandJob.cpp (added) * src/controller_MPQCCommandJob.hpp (added) * src/poolworker.cpp (added) * src/unittests/Makefile.am (modified) * tests/CodeChecks/Makefile.am (modified) * tests/CodeChecks/testsuite-globallistofactions_hpp.at (modified) * tests/Fragmentations/Makefile.am (modified) * tests/JobMarket/Makefile.am (added) * tests/JobMarket/atlocal.in (added) * tests/JobMarket/molecuilder.in (added) * tests/JobMarket/mpqc.cpp (added) * tests/JobMarket/pre/BondFragment00.in (added) * tests/JobMarket/pre/BondFragment00.out (added) * tests/JobMarket/pre/BondFragment01.out (added) * tests/JobMarket/pre/BondFragment02.out (added) * tests/JobMarket/pre/BondFragment03.out (added) * tests/JobMarket/pre/BondFragment04.out (added) * tests/JobMarket/pre/BondFragment05.out (added) * tests/JobMarket/pre/BondFragment06.out (added) * tests/JobMarket/pre/BondFragmentAdjacency.dat (added) * tests/JobMarket/pre/BondFragmentForces-Factors.dat (added) * tests/JobMarket/pre/BondFragmentKeySets.dat (added) * tests/JobMarket/testsuite-jobmarket-molecuilderrun.at (added) * tests/JobMarket/testsuite-jobmarket-mpqc-jobs.at (added) * tests/JobMarket/testsuite-jobmarket-stand-in-mpqc.at (added) * tests/JobMarket/testsuite-jobmarket.at (added) * tests/JobMarket/testsuite.at (added) * tests/Makefile.am (modified) * tests/Python/AllActions/options.dat (modified) * tests/Python/Makefile.am (modified) * tests/Tesselations/Makefile.am (modified) * tests/regression/Fragmentation/testsuite-fragmentation.at (modified) * tests/regression/Makefile.am (modified) Merge branch 'Candidate_v1.3.0' into stable Conflicts: ... Tue, 10 Jul 2012 15:41:00 GMT Frederik Heber [004d5c] * JobMarket/AUTHORS (deleted) * JobMarket/COPYING (deleted) * JobMarket/ChangeLog (deleted) * JobMarket/INSTALL (deleted) * JobMarket/JobMarket-debug.pc.in (deleted) * JobMarket/JobMarket.pc.in (deleted) * JobMarket/Makefile.am (deleted) * JobMarket/NEWS (deleted) * JobMarket/README (deleted) * JobMarket/bootstrap (deleted) * JobMarket/build-aux/README (deleted) * JobMarket/configure.ac (deleted) * JobMarket/configure.scan (deleted) * JobMarket/doc/Doxyfile (deleted) * JobMarket/doc/Makefile.am (deleted) * JobMarket/doc/am_doxygen_include.am (deleted) * JobMarket/libJobMarket_config.h.in (deleted) * JobMarket/m4 (deleted) * JobMarket/src/JobMarket/Connection.hpp (deleted) * JobMarket/src/JobMarket/Controller/ControllerCommand.hpp (deleted) * JobMarket/src/JobMarket/Controller/ControllerCommandRegistry.cpp (deleted) * JobMarket/src/JobMarket/Controller/ControllerCommandRegistry.hpp (deleted) * JobMarket/src/JobMarket/Controller/ControllerOptions.cpp (deleted) * JobMarket/src/JobMarket/Controller/ControllerOptions.hpp (deleted) * JobMarket/src/JobMarket/Controller/ControllerOptions_SystemCommandJob.cpp (deleted) * JobMarket/src/JobMarket/Controller/ControllerOptions_SystemCommandJob.hpp (deleted) * JobMarket/src/JobMarket/Controller/FragmentController.cpp (deleted) * JobMarket/src/JobMarket/Controller/FragmentController.hpp (deleted) * JobMarket/src/JobMarket/Controller/controller.cpp (deleted) * JobMarket/src/JobMarket/Controller/controller_AddOn.hpp (deleted) * JobMarket/src/JobMarket/Controller/controller_AddOn_SystemCommandJob.cpp (deleted) * JobMarket/src/JobMarket/Controller/controller_SystemCommandJob.cpp (deleted) * JobMarket/src/JobMarket/Controller/controller_SystemCommandJob.hpp (deleted) * JobMarket/src/JobMarket/Controller/controller_main.cpp (deleted) * JobMarket/src/JobMarket/Controller/controller_main.hpp (deleted) * JobMarket/src/JobMarket/ControllerChoices.hpp (deleted) * JobMarket/src/JobMarket/DefaultOptions.cpp (deleted) * JobMarket/src/JobMarket/DefaultOptions.hpp (deleted) * JobMarket/src/JobMarket/ExitflagContainer.hpp (deleted) * JobMarket/src/JobMarket/FragmentQueue.cpp (deleted) * JobMarket/src/JobMarket/FragmentQueue.hpp (deleted) * JobMarket/src/JobMarket/FragmentScheduler.cpp (deleted) * JobMarket/src/JobMarket/FragmentScheduler.hpp (deleted) * JobMarket/src/JobMarket/GlobalJobId.cpp (deleted) * JobMarket/src/JobMarket/GlobalJobId.hpp (deleted) * JobMarket/src/JobMarket/JobId.cpp (deleted) * JobMarket/src/JobMarket/JobId.hpp (deleted) * JobMarket/src/JobMarket/Jobs/FragmentJob.cpp (deleted) * JobMarket/src/JobMarket/Jobs/FragmentJob.hpp (deleted) * JobMarket/src/JobMarket/Jobs/SystemCommandJob.cpp (deleted) * JobMarket/src/JobMarket/Jobs/SystemCommandJob.hpp (deleted) * JobMarket/src/JobMarket/Listener.cpp (deleted) * JobMarket/src/JobMarket/Listener.hpp (deleted) * JobMarket/src/JobMarket/Makefile.am (deleted) * JobMarket/src/JobMarket/Operations/AsyncOperation.cpp (deleted) * JobMarket/src/JobMarket/Operations/AsyncOperation.hpp (deleted) * JobMarket/src/JobMarket/Operations/Controllers/CheckResultsOperation.cpp (deleted) * JobMarket/src/JobMarket/Operations/Controllers/CheckResultsOperation.hpp (deleted) * JobMarket/src/JobMarket/Operations/Controllers/GetNextJobIdOperation.cpp (deleted) * JobMarket/src/JobMarket/Operations/Controllers/GetNextJobIdOperation.hpp (deleted) * JobMarket/src/JobMarket/Operations/Controllers/ReceiveResultsOperation.cpp (deleted) * JobMarket/src/JobMarket/Operations/Controllers/ReceiveResultsOperation.hpp (deleted) * JobMarket/src/JobMarket/Operations/Controllers/RemoveAllWorkerOperation.cpp (deleted) * JobMarket/src/JobMarket/Operations/Controllers/RemoveAllWorkerOperation.hpp (deleted) * JobMarket/src/JobMarket/Operations/Controllers/SendJobsOperation.cpp (deleted) * JobMarket/src/JobMarket/Operations/Controllers/SendJobsOperation.hpp (deleted) * JobMarket/src/JobMarket/Operations/Controllers/ShutdownOperation.cpp (deleted) * JobMarket/src/JobMarket/Operations/Controllers/ShutdownOperation.hpp (deleted) * JobMarket/src/JobMarket/Operations/Operation.hpp (deleted) * JobMarket/src/JobMarket/Operations/OperationQueue.cpp (deleted) * JobMarket/src/JobMarket/Operations/OperationQueue.hpp (deleted) * JobMarket/src/JobMarket/Operations/OperationRegistry.cpp (deleted) * JobMarket/src/JobMarket/Operations/OperationRegistry.hpp (deleted) * JobMarket/src/JobMarket/Operations/Servers/SendJobToWorkerOperation.cpp (deleted) * JobMarket/src/JobMarket/Operations/Servers/SendJobToWorkerOperation.hpp (deleted) * JobMarket/src/JobMarket/Operations/Servers/ShutdownWorkerOperation.cpp (deleted) * JobMarket/src/JobMarket/Operations/Servers/ShutdownWorkerOperation.hpp (deleted) * JobMarket/src/JobMarket/Operations/SyncOperation.cpp (deleted) * JobMarket/src/JobMarket/Operations/SyncOperation.hpp (deleted) * JobMarket/src/JobMarket/Operations/Workers/EnrollInPoolOperation.cpp (deleted) * JobMarket/src/JobMarket/Operations/Workers/EnrollInPoolOperation.hpp (deleted) * JobMarket/src/JobMarket/Operations/Workers/ObtainJobOperation.cpp (deleted) * JobMarket/src/JobMarket/Operations/Workers/ObtainJobOperation.hpp (deleted) * JobMarket/src/JobMarket/Operations/Workers/RemoveFromPoolOperation.cpp (deleted) * JobMarket/src/JobMarket/Operations/Workers/RemoveFromPoolOperation.hpp (deleted) * JobMarket/src/JobMarket/Operations/Workers/SubmitResultOperation.cpp (deleted) * JobMarket/src/JobMarket/Operations/Workers/SubmitResultOperation.hpp (deleted) * JobMarket/src/JobMarket/Pool/PoolWorker.cpp (deleted) * JobMarket/src/JobMarket/Pool/PoolWorker.hpp (deleted) * JobMarket/src/JobMarket/Pool/WorkerPool.cpp (deleted) * JobMarket/src/JobMarket/Pool/WorkerPool.hpp (deleted) * JobMarket/src/JobMarket/Results/FragmentResult.cpp (deleted) * JobMarket/src/JobMarket/Results/FragmentResult.hpp (deleted) * JobMarket/src/JobMarket/ServerOptions.cpp (deleted) * JobMarket/src/JobMarket/ServerOptions.hpp (deleted) * JobMarket/src/JobMarket/SignalHandler.cpp (deleted) * JobMarket/src/JobMarket/SignalHandler.hpp (deleted) * JobMarket/src/JobMarket/SignalOptions.cpp (deleted) * JobMarket/src/JobMarket/SignalOptions.hpp (deleted) * JobMarket/src/JobMarket/WorkerAddress.cpp (deleted) * JobMarket/src/JobMarket/WorkerAddress.hpp (deleted) * JobMarket/src/JobMarket/WorkerChoices.hpp (deleted) * JobMarket/src/JobMarket/WorkerOptions.cpp (deleted) * JobMarket/src/JobMarket/WorkerOptions.hpp (deleted) * JobMarket/src/JobMarket/atexit.cpp (deleted) * JobMarket/src/JobMarket/atexit.hpp (deleted) * JobMarket/src/JobMarket/poolworker.cpp (deleted) * JobMarket/src/JobMarket/poolworker_main.cpp (deleted) * JobMarket/src/JobMarket/poolworker_main.hpp (deleted) * JobMarket/src/JobMarket/server.cpp (deleted) * JobMarket/src/JobMarket/server_main.cpp (deleted) * JobMarket/src/JobMarket/server_main.hpp (deleted) * JobMarket/src/JobMarket/types.hpp (deleted) * JobMarket/src/documentation/Makefile.am (deleted) * JobMarket/src/documentation/jobmarket.dox (deleted) * JobMarket/src/documentation/mainpage.dox (deleted) * JobMarket/src/unittests/FragmentJobUnitTest.cpp (deleted) * JobMarket/src/unittests/FragmentJobUnitTest.hpp (deleted) * JobMarket/src/unittests/FragmentQueueUnitTest.cpp (deleted) * JobMarket/src/unittests/FragmentQueueUnitTest.hpp (deleted) * JobMarket/src/unittests/FragmentResultUnitTest.cpp (deleted) * JobMarket/src/unittests/FragmentResultUnitTest.hpp (deleted) * JobMarket/src/unittests/Makefile.am (deleted) * JobMarket/src/unittests/OperationQueueUnitTest.cpp (deleted) * JobMarket/src/unittests/OperationQueueUnitTest.hpp (deleted) * JobMarket/src/unittests/SystemCommandJobUnitTest.cpp (deleted) * JobMarket/src/unittests/SystemCommandJobUnitTest.hpp (deleted) * JobMarket/src/unittests/UnitTestMain.cpp (deleted) * JobMarket/src/unittests/WorkerAddressUnitTest.cpp (deleted) * JobMarket/src/unittests/WorkerAddressUnitTest.hpp (deleted) * JobMarket/src/unittests/WorkerPoolUnitTest.cpp (deleted) * JobMarket/src/unittests/WorkerPoolUnitTest.hpp (deleted) * JobMarket/src/unittests/stubs/AsyncOperationStub.hpp (deleted) * JobMarket/src/unittests/stubs/FragmentJobStub.cpp (deleted) * JobMarket/src/unittests/stubs/FragmentJobStub.hpp (deleted) * JobMarket/src/unittests/stubs/FragmentResultStub.cpp (deleted) * JobMarket/src/unittests/stubs/ObserverStub.cpp (deleted) * JobMarket/src/unittests/stubs/ObserverStub.hpp (deleted) * JobMarket/tests/CodeChecks/Makefile.am (deleted) * JobMarket/tests/CodeChecks/atlocal.in (deleted) * JobMarket/tests/CodeChecks/testsuite-config_h.at (deleted) * JobMarket/tests/CodeChecks/testsuite-date_in_dox.at (deleted) * JobMarket/tests/CodeChecks/testsuite-header-dist.at (deleted) * JobMarket/tests/CodeChecks/testsuite-memdebug.at (deleted) * JobMarket/tests/CodeChecks/testsuite-project-disclaimer.at (deleted) * JobMarket/tests/Makefile.am (deleted) * JobMarket/tests/regression/atlocal.in (deleted) * JobMarket/tests/regression/testsuite-addingjobs.at (deleted) * JobMarket/tests/regression/testsuite-checkstate.at (deleted) * JobMarket/tests/regression/testsuite-completerun.at (deleted) * JobMarket/tests/regression/testsuite-enrollinpool.at (deleted) * JobMarket/tests/regression/testsuite-getresults.at (deleted) * JobMarket/tests/regression/testsuite-resubmitjobs.at (deleted) * JobMarket/tests/regression/testsuite-server-shutdown.at (deleted) * JobMarket/tests/regression/testsuite-server-worker.at (deleted) * JobMarket/tests/regression/testsuite.at (deleted) * Makefile.am (modified) * configure.ac (modified) * m4/ax_jobmarket.m4 (added) * src/Actions/GlobalListOfActions.hpp (modified) * src/Actions/Makefile.am (modified) * src/Jobs/MPQCCommandJob.cpp (modified) * src/Jobs/MPQCCommandJob_MPQCData.cpp (modified) * src/Jobs/MPQCCommandJob_MPQCData.hpp (modified) * src/Jobs/Makefile.am (modified) * src/Jobs/unittests/Makefile.am (modified) * src/Makefile.am (modified) * src/Server.cpp (modified) * src/UIElements/Makefile.am (modified) * src/controller_MPQCCommandJob.cpp (modified) * src/poolworker.cpp (modified) * src/unittests/Makefile.am (modified) * tests/CodeChecks/testsuite-globallistofactions_hpp.at (modified) * tests/JobMarket/Makefile.am (moved) * tests/JobMarket/atlocal.in (added) * tests/JobMarket/molecuilder.in (added) * tests/JobMarket/mpqc.cpp (moved) * tests/JobMarket/pre/BondFragment00.in (moved) * tests/JobMarket/pre/BondFragment00.out (moved) * tests/JobMarket/pre/BondFragment01.out (moved) * tests/JobMarket/pre/BondFragment02.out (moved) * tests/JobMarket/pre/BondFragment03.out (moved) * tests/JobMarket/pre/BondFragment04.out (moved) * tests/JobMarket/pre/BondFragment05.out (moved) * tests/JobMarket/pre/BondFragment06.out (moved) * tests/JobMarket/pre/BondFragmentAdjacency.dat (moved) * tests/JobMarket/pre/BondFragmentForces-Factors.dat (moved) * tests/JobMarket/pre/BondFragmentKeySets.dat (moved) * tests/JobMarket/testsuite-jobmarket-molecuilderrun.at (moved) * tests/JobMarket/testsuite-jobmarket-mpqc-jobs.at (moved) * tests/JobMarket/testsuite-jobmarket-stand-in-mpqc.at (moved) * tests/JobMarket/testsuite-jobmarket.at (added) * tests/JobMarket/testsuite.at (moved) * tests/Makefile.am (modified) * tests/regression/Fragmentation/testsuite-fragmentation.at (modified) * tests/regression/Makefile.am (modified) Removed JobMarket as it is now in its own repository. - added ... Fri, 06 Jul 2012 10:18:46 GMT Frederik Heber [a10cc0] * JobMarket/AUTHORS (added) * JobMarket/COPYING (added) * JobMarket/ChangeLog (added) * JobMarket/INSTALL (added) * JobMarket/JobMarket-debug.pc.in (added) * JobMarket/JobMarket.pc.in (added) * JobMarket/Makefile.am (added) * JobMarket/NEWS (added) * JobMarket/README (added) * JobMarket/bootstrap (added) * JobMarket/build-aux/README (added) * JobMarket/configure.ac (added) * JobMarket/configure.scan (added) * JobMarket/doc/Doxyfile (added) * JobMarket/doc/Makefile.am (added) * JobMarket/doc/am_doxygen_include.am (added) * JobMarket/libJobMarket_config.h.in (added) * JobMarket/m4 (added) * JobMarket/src/JobMarket/Connection.hpp (moved) * JobMarket/src/JobMarket/ControllerChoices.hpp (moved) * JobMarket/src/JobMarket/ExitflagContainer.hpp (moved) * JobMarket/src/JobMarket/FragmentController.cpp (moved) * JobMarket/src/JobMarket/FragmentController.hpp (moved) * JobMarket/src/JobMarket/FragmentQueue.cpp (moved) * JobMarket/src/JobMarket/FragmentQueue.hpp (moved) * JobMarket/src/JobMarket/FragmentScheduler.cpp (moved) * JobMarket/src/JobMarket/FragmentScheduler.hpp (moved) * JobMarket/src/JobMarket/GlobalJobId.cpp (moved) * JobMarket/src/JobMarket/GlobalJobId.hpp (moved) * JobMarket/src/JobMarket/JobId.cpp (moved) * JobMarket/src/JobMarket/JobId.hpp (moved) * JobMarket/src/JobMarket/Jobs/FragmentJob.cpp (moved) * JobMarket/src/JobMarket/Jobs/FragmentJob.hpp (moved) * JobMarket/src/JobMarket/Jobs/SystemCommandJob.cpp (moved) * JobMarket/src/JobMarket/Jobs/SystemCommandJob.hpp (moved) * JobMarket/src/JobMarket/Listener.cpp (moved) * JobMarket/src/JobMarket/Listener.hpp (moved) * JobMarket/src/JobMarket/Makefile.am (added) * JobMarket/src/JobMarket/Operations/AsyncOperation.cpp (moved) * JobMarket/src/JobMarket/Operations/AsyncOperation.hpp (moved) * JobMarket/src/JobMarket/Operations/Controllers/CheckResultsOperation.cpp (moved) * JobMarket/src/JobMarket/Operations/Controllers/CheckResultsOperation.hpp (moved) * JobMarket/src/JobMarket/Operations/Controllers/GetNextJobIdOperation.cpp (moved) * JobMarket/src/JobMarket/Operations/Controllers/GetNextJobIdOperation.hpp (moved) * JobMarket/src/JobMarket/Operations/Controllers/ReceiveResultsOperation.cpp (moved) * JobMarket/src/JobMarket/Operations/Controllers/ReceiveResultsOperation.hpp (moved) * JobMarket/src/JobMarket/Operations/Controllers/RemoveAllWorkerOperation.cpp (moved) * JobMarket/src/JobMarket/Operations/Controllers/RemoveAllWorkerOperation.hpp (moved) * JobMarket/src/JobMarket/Operations/Controllers/SendJobsOperation.cpp (moved) * JobMarket/src/JobMarket/Operations/Controllers/SendJobsOperation.hpp (moved) * JobMarket/src/JobMarket/Operations/Controllers/ShutdownOperation.cpp (moved) * JobMarket/src/JobMarket/Operations/Controllers/ShutdownOperation.hpp (moved) * JobMarket/src/JobMarket/Operations/Operation.hpp (moved) * JobMarket/src/JobMarket/Operations/OperationQueue.cpp (moved) * JobMarket/src/JobMarket/Operations/OperationQueue.hpp (moved) * JobMarket/src/JobMarket/Operations/OperationRegistry.cpp (moved) * JobMarket/src/JobMarket/Operations/OperationRegistry.hpp (moved) * JobMarket/src/JobMarket/Operations/Servers/SendJobToWorkerOperation.cpp (moved) * JobMarket/src/JobMarket/Operations/Servers/SendJobToWorkerOperation.hpp (moved) * JobMarket/src/JobMarket/Operations/Servers/ShutdownWorkerOperation.cpp (moved) * JobMarket/src/JobMarket/Operations/Servers/ShutdownWorkerOperation.hpp (moved) * JobMarket/src/JobMarket/Operations/SyncOperation.cpp (moved) * JobMarket/src/JobMarket/Operations/SyncOperation.hpp (moved) * JobMarket/src/JobMarket/Operations/Workers/EnrollInPoolOperation.cpp (moved) * JobMarket/src/JobMarket/Operations/Workers/EnrollInPoolOperation.hpp (moved) * JobMarket/src/JobMarket/Operations/Workers/ObtainJobOperation.cpp (moved) * JobMarket/src/JobMarket/Operations/Workers/ObtainJobOperation.hpp (moved) * JobMarket/src/JobMarket/Operations/Workers/RemoveFromPoolOperation.cpp (moved) * JobMarket/src/JobMarket/Operations/Workers/RemoveFromPoolOperation.hpp (moved) * JobMarket/src/JobMarket/Operations/Workers/SubmitResultOperation.cpp (moved) * JobMarket/src/JobMarket/Operations/Workers/SubmitResultOperation.hpp (moved) * JobMarket/src/JobMarket/Pool/PoolWorker.cpp (moved) * JobMarket/src/JobMarket/Pool/PoolWorker.hpp (moved) * JobMarket/src/JobMarket/Pool/WorkerPool.cpp (moved) * JobMarket/src/JobMarket/Pool/WorkerPool.hpp (moved) * JobMarket/src/JobMarket/Results/FragmentResult.cpp (moved) * JobMarket/src/JobMarket/Results/FragmentResult.hpp (moved) * JobMarket/src/JobMarket/WorkerAddress.cpp (moved) * JobMarket/src/JobMarket/WorkerAddress.hpp (moved) * JobMarket/src/JobMarket/WorkerChoices.hpp (moved) * JobMarket/src/JobMarket/atexit.cpp (moved) * JobMarket/src/JobMarket/atexit.hpp (moved) * JobMarket/src/JobMarket/types.hpp (moved) * JobMarket/src/documentation/Makefile.am (added) * JobMarket/src/documentation/jobmarket.dox (moved) * JobMarket/src/documentation/mainpage.dox (added) * JobMarket/src/unittests/FragmentJobUnitTest.cpp (moved) * JobMarket/src/unittests/FragmentJobUnitTest.hpp (moved) * JobMarket/src/unittests/FragmentQueueUnitTest.cpp (moved) * JobMarket/src/unittests/FragmentQueueUnitTest.hpp (moved) * JobMarket/src/unittests/FragmentResultUnitTest.cpp (moved) * JobMarket/src/unittests/FragmentResultUnitTest.hpp (moved) * JobMarket/src/unittests/Makefile.am (moved) * JobMarket/src/unittests/OperationQueueUnitTest.cpp (moved) * JobMarket/src/unittests/OperationQueueUnitTest.hpp (moved) * JobMarket/src/unittests/SystemCommandJobUnitTest.cpp (moved) * JobMarket/src/unittests/SystemCommandJobUnitTest.hpp (moved) * JobMarket/src/unittests/UnitTestMain.cpp (added) * JobMarket/src/unittests/WorkerAddressUnitTest.cpp (moved) * JobMarket/src/unittests/WorkerAddressUnitTest.hpp (moved) * JobMarket/src/unittests/WorkerPoolUnitTest.cpp (moved) * JobMarket/src/unittests/WorkerPoolUnitTest.hpp (moved) * JobMarket/src/unittests/stubs/AsyncOperationStub.hpp (moved) * JobMarket/src/unittests/stubs/FragmentJobStub.cpp (moved) * JobMarket/src/unittests/stubs/FragmentJobStub.hpp (moved) * JobMarket/src/unittests/stubs/FragmentResultStub.cpp (moved) * JobMarket/src/unittests/stubs/ObserverStub.cpp (added) * JobMarket/src/unittests/stubs/ObserverStub.hpp (added) * JobMarket/tests/CodeChecks/Makefile.am (added) * JobMarket/tests/CodeChecks/atlocal.in (added) * JobMarket/tests/CodeChecks/testsuite-config_h.at (added) * JobMarket/tests/CodeChecks/testsuite-date_in_dox.at (added) * JobMarket/tests/CodeChecks/testsuite-header-dist.at (added) * JobMarket/tests/CodeChecks/testsuite-memdebug.at (added) * JobMarket/tests/CodeChecks/testsuite-project-disclaimer.at (added) * JobMarket/tests/CodeChecks/testsuite.at (added) * Makefile.am (modified) * configure.ac (modified) * src/Fragmentation/Automation/Makefile.am (deleted) * src/Jobs/MPQCCommandJob.cpp (modified) * src/Jobs/MPQCCommandJob.hpp (modified) * src/Jobs/Makefile.am (modified) * src/Jobs/unittests/Makefile.am (modified) * src/Makefile.am (modified) * src/UIElements/Makefile.am (modified) * src/unittests/Makefile.am (modified) Moved all Fragmentation/Automation into new subpackage JobMarket. - ... Wed, 27 Jun 2012 16:07:18 GMT Frederik Heber [d920b9] * configure.ac (modified) * src/Fragmentation/Automation/Controller/Commands/ReceiveJobsOperation.cpp (modified) * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/FragmentWorker.cpp (modified) * src/Fragmentation/Automation/Jobs/FragmentJob.cpp (modified) * src/Fragmentation/Automation/Jobs/FragmentJob.hpp (modified) * src/Fragmentation/Automation/Jobs/SystemCommandJob.cpp (added) * src/Fragmentation/Automation/Jobs/SystemCommandJob.hpp (added) * src/Fragmentation/Automation/Makefile.am (modified) * src/Fragmentation/Automation/Worker.cpp (modified) * src/Fragmentation/Automation/controller.cpp (modified) * src/Fragmentation/Automation/unittests/FragmentJobUnitTest.cpp (modified) * src/Fragmentation/Automation/unittests/FragmentQueueUnitTest.cpp (modified) * src/Fragmentation/Automation/unittests/Makefile.am (modified) * src/Fragmentation/Automation/unittests/SystemCommandJobUnitTest.cpp (added) * src/Fragmentation/Automation/unittests/SystemCommandJobUnitTest.hpp (added) * src/Fragmentation/Automation/unittests/stubs/FragmentJobStub.cpp (added) * src/Fragmentation/Automation/unittests/stubs/FragmentJobStub.hpp (added) Abstracted FragmentJob and introduced SystemCommandJob which has its ... Fri, 22 Jun 2012 15:21:25 GMT Frederik Heber [78ad7d] * configure.ac (modified) * src/Fragmentation/Automation/Controller/Commands/ReceiveJobsOperation.cpp (modified) * src/Fragmentation/Automation/Controller/Commands/ReceiveJobsOperation.hpp (modified) * src/Fragmentation/Automation/FragmentJob.hpp (modified) * src/Fragmentation/Automation/FragmentQueue.cpp (modified) * src/Fragmentation/Automation/FragmentQueue.hpp (modified) * src/Fragmentation/Automation/FragmentScheduler.cpp (modified) * src/Fragmentation/Automation/FragmentScheduler.hpp (modified) * src/Fragmentation/Automation/FragmentWorker.cpp (modified) * src/Fragmentation/Automation/FragmentWorker.hpp (modified) * src/Fragmentation/Automation/controller.cpp (modified) * src/Fragmentation/Automation/unittests/FragmentJobUnitTest.cpp (modified) * src/Fragmentation/Automation/unittests/FragmentQueueUnitTest.cpp (modified) FragmentJob is now passed inside boost::shared_ptr. - FragmentJob ... Mon, 18 Jun 2012 10:53:31 GMT Frederik Heber [0174b62] * configure.ac (modified) Set version to 1.2.5 - Molecuilder library is now 9:0:0. - ... Fri, 04 May 2012 14:13:17 GMT Frederik Heber [d0b3aca] * Makefile.am (modified) * configure.ac (modified) * src/Fragmentation/Automation/Makefile.am (added) * src/Fragmentation/Automation/Worker.cpp (added) * tests/CodeChecks/testsuite-config_h.at (modified) * tests/CodeChecks/testsuite-memdebug.at (modified) Added initial setting for creating client/server for automated ... Thu, 12 Apr 2012 07:31:26 GMT Frederik Heber [e44956] * configure.ac (modified) Set version to 1.2.4 - Molecuilder library is now 8:0:1. - ... Mon, 02 Apr 2012 11:09:47 GMT Frederik Heber [2935fd] * configure.ac (modified) Set version to 1.2.3 - Molecuilder library is now 8:0:0. - ... Wed, 22 Feb 2012 11:29:59 GMT Frederik Heber [fb4086] * configure.ac (modified) Set version to 1.2.2 - Molecuilder library is now 7:0:1. - ... Mon, 09 Jan 2012 18:15:58 GMT Frederik Heber [d08ab3] * LinearAlgebra/configure.ac (modified) * configure.ac (modified) Set version to 1.2.1 - Molecuilder library is now 7:0:0. - ... Fri, 06 Jan 2012 14:02:04 GMT Frederik Heber [fbbcde] * LinearAlgebra/configure.ac (modified) * LinearAlgebra/src/unittests/Makefile.am (modified) * configure.ac (modified) * src/LinkedCell/LinkedCell.cpp (modified) * src/LinkedCell/LinkedCell_View.cpp (modified) * src/LinkedCell/types.hpp (modified) * src/LinkedCell/unittests/LinkedCellUnitTest.cpp (modified) * src/LinkedCell/unittests/LinkedCell_ViewUnitTest.cpp (modified) * src/unittests/Makefile.am (modified) FIX: TestRunner is now compiled based on AM_CONDITIONAL set by HAVE_ECUT. Thu, 05 Jan 2012 12:44:07 GMT Frederik Heber [9fd196] * configure.ac (modified) * tests/Python/BoxMaker/testsuite-python-boxmaker.at (modified) * utils/Bash/Makefile.am (added) * utils/Bash/bash_completion (added) * utils/Makefile.am (modified) * utils/Python/HOWTO-boxmaker (moved) * utils/Python/Makefile.am (added) * utils/Python/boxmaker.py.in (moved) * utils/Python/python_wrapper.in (moved) Added bash_completion file. - use as . utils/Bash/bash_completion, ... Mon, 02 Jan 2012 13:35:16 GMT Frederik Heber [7c0191] * configure.ac (modified) We now require CodePatterns 1.2.1. - this is to incorporate the ... Mon, 02 Jan 2012 13:00:04 GMT Frederik Heber [02ce36] * configure.ac (modified) * src/Actions/Process.hpp (modified) * src/Atom/atom_observable.cpp (modified) * src/Atom/atom_observable.hpp (modified) * src/Descriptors/AtomDescriptor.cpp (modified) * src/Descriptors/AtomIdDescriptor.cpp (modified) * src/Descriptors/MoleculeDescriptor.cpp (modified) * src/Descriptors/MoleculeIdDescriptor.cpp (modified) * src/Descriptors/MoleculePtrDescriptor.cpp (modified) * src/MoleculeListClass.hpp (modified) * src/Parser/ChangeTracker.hpp (modified) * src/Parser/FormatParser_common.cpp (modified) * src/Parser/FormatParser_common.hpp (modified) * src/UIElements/CommandLineUI/CommandLineStatusIndicator.cpp (modified) * src/UIElements/CommandLineUI/CommandLineStatusIndicator.hpp (modified) * src/UIElements/TextUI/TextStatusIndicator.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldView.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldView.hpp (modified) * src/UIElements/Views/Qt4/QtMoleculeView.hpp (modified) * src/UIElements/Views/Qt4/QtStatusBar.hpp (modified) * src/UIElements/Views/Qt4/QtWorldView.hpp (modified) * src/World.cpp (modified) * src/World.hpp (modified) * src/molecule.hpp (modified) We now require CodePatterns 1.2.0. - this is due to the updated ... Wed, 28 Dec 2011 15:30:07 GMT Frederik Heber [794bc8] * configure.ac (modified) * src/LinkedCell/LinkedCell.cpp (added) * src/LinkedCell/LinkedCell.hpp (added) * src/LinkedCell/types.hpp (added) * src/LinkedCell/unittests/LinkedCellUnitTest.cpp (added) * src/LinkedCell/unittests/LinkedCellUnitTest.hpp (added) * src/LinkedCell/unittests/Makefile.am (modified) * src/unittests/Makefile.am (modified) Added LinkedCell as commodity class around LinkedList. - LinkedList ... Wed, 28 Dec 2011 15:25:48 GMT Frederik Heber [30c753] * configure.ac (modified) * src/Dynamics/LinearInterpolationBetweenSteps.hpp (modified) * src/Dynamics/VerletForceIntegration.hpp (modified) * src/Parser/FormatParserStorage.cpp (modified) * src/molecule.cpp (modified) * src/molecule.hpp (modified) * src/molecule_geometry.cpp (modified) * src/molecule_graph.cpp (modified) * tests/regression/Molecules/BondFile/testsuite-molecules-fragmentation-bond-file.at (modified) * tests/regression/Tesselation/BigNonConvex/testsuite-tesselation-big-non-convex-envelope.at (modified) Removed atomSet atoms in class molecule and replaced by a ... Wed, 28 Dec 2011 15:24:58 GMT Frederik Heber [f99714] * LinearAlgebra/configure.ac (modified) * configure.ac (modified) FIX: Finally correctly implemented all --enable-... switches in ... Wed, 28 Dec 2011 15:24:57 GMT Frederik Heber [db1a72] * LinearAlgebra/configure.ac (modified) * configure.ac (modified) FIX: Corrected check for gsl's blas requirement. Wed, 28 Dec 2011 15:24:57 GMT Frederik Heber [c015b3] * configure.ac (modified) * src/Actions/Makefile.am (modified) * src/Makefile.am (modified) * src/UIElements/Makefile.am (modified) * tests/Makefile.am (modified) * tests/Python/AllActions/getPossibleOptions.sh (moved) * tests/Python/AllActions/listcmds.py (moved) * tests/Python/AllActions/missing.dat (moved) * tests/Python/AllActions/moltest.py (moved) * tests/Python/AllActions/moltest_check.py (moved) * tests/Python/AllActions/options.dat (moved) * tests/Python/AllActions/testsuite-python-allactions.at (added) * tests/Python/AllActions/testsuite-python-options_dat.at (added) * tests/Python/BoxMaker/post/out.data (moved) * tests/Python/BoxMaker/post/out.xyz (moved) * tests/Python/BoxMaker/pre/argon.data (moved) * tests/Python/BoxMaker/pre/argon.potentials (moved) * tests/Python/BoxMaker/pre/argon.tremolo (moved) * tests/Python/BoxMaker/testsuite-python-boxmaker.at (added) * tests/Python/CommandHelp/testsuite-python-commandhelp.at (moved) * tests/Python/Makefile.am (added) * tests/Python/ReturnValueActions/testsuite-python-returnvalueactions.at (moved) * tests/Python/atlocal.in (added) * tests/Python/run.in (moved) * tests/Python/testsuite.at (added) * tests/regression/Makefile.am (modified) * tests/regression/Python/AllActions/testsuite-python-allactions.at (deleted) * tests/regression/Python/AllActions/testsuite-python-options_dat.at (deleted) * tests/regression/Python/BoxMaker/testsuite-python-boxmaker.at (deleted) * tests/regression/Python/testsuite-python.at (deleted) * tests/regression/testsuite.at (modified) * utils/Makefile.am (modified) Added enable-switches for Qt-based GUI and python module and scripts. ... Wed, 28 Dec 2011 15:24:56 GMT Frederik Heber [f3b8a5] * LinearAlgebra/configure.ac (modified) * configure.ac (modified) Changed enable switches in configure.ac. - with-valgrind is ... Thu, 10 Nov 2011 16:05:43 GMT Frederik Heber [bde4a6] * configure.ac (modified) Set version to 1.2.0 - Molecuilder library is now 6:0:0. - ... Thu, 10 Nov 2011 11:23:49 GMT Frederik Heber [04e1fb] * configure.ac (modified) * utils/Makefile.am (modified) * utils/python_wrapper.in (added) Added rules to utils/Makefile.am such that python script can be ... Thu, 10 Nov 2011 10:21:23 GMT Frederik Heber [938ffd] * Makefile.am (modified) * configure.ac (modified) * utils/Makefile.am (added) Added Makefile to utils to install python scripts. Mon, 07 Nov 2011 16:12:25 GMT Frederik Heber [bcfb77] * configure.ac (modified) * utils/boxmaker.py.in (moved) Added correct shebang to boxmaker.py. - also configure fills in ... Fri, 04 Nov 2011 15:20:40 GMT Frederik Heber [2d31e1] * configure.ac (modified) * src/Actions/hello.cpp (modified) * src/Makefile.am (modified) * tests/regression/Makefile.am (modified) * tests/regression/Python/run.in (added) * tests/regression/Python/testsuite-python.at (modified) Python tests are now launched via small script run.in. - this is ... Fri, 04 Nov 2011 15:20:40 GMT Frederik Heber [715085] * configure.ac (modified) * m4/ax_python.m4 (added) * src/Actions/hello.cpp (added) * src/Makefile.am (modified) * tests/regression/Makefile.am (modified) * tests/regression/Python/testsuite-python.at (added) * tests/regression/testsuite.at (modified) Simple boost::python test program added. - we have a function ... Fri, 04 Nov 2011 15:20:21 GMT Frederik Heber [e5cec4] * configure.ac (modified) * m4/bnv_have_qt.m4 (deleted) * src/UIElements/Makefile.am (modified) Removed macro bnv_have_qt, replaced by pkg-config info. - ... Fri, 04 Nov 2011 15:20:21 GMT Frederik Heber [22db89] * configure.ac (modified) * m4/ax_codepatterns.m4 (modified) Using new version of CodePatterns 1.1.7. - m4 macro ... Fri, 04 Nov 2011 15:20:06 GMT Frederik Heber [bf3379] * configure.ac (modified) Set version to 1.1.6 - Molecuilder library is now 5:2:0. - ... Thu, 03 Nov 2011 10:38:31 GMT Frederik Heber [bbff92] * LinearAlgebra/configure.ac (modified) * LinearAlgebra/doc/Doxyfile (modified) * LinearAlgebra/src/documentation/groups.dox (added) * LinearAlgebra/src/documentation/mainpage.dox (added) * LinearAlgebra/tests/CodeChecks/Makefile.am (modified) * LinearAlgebra/tests/CodeChecks/testsuite-config_h.at (modified) * LinearAlgebra/tests/CodeChecks/testsuite-date_in_dox.at (added) * LinearAlgebra/tests/CodeChecks/testsuite-memdebug.at (modified) * LinearAlgebra/tests/CodeChecks/testsuite.at (modified) * Makefile.am (modified) * configure.ac (modified) * doc/Doxyfile (modified) * doc/userguide.xml (modified) * src/Actions/Action.hpp (modified) * src/Actions/ValueStorage.hpp (modified) * src/UIElements/CommandLineUI/CommandLineParser.hpp (modified) * src/builder.cpp (modified) * src/documentation/code.dox (added) * src/documentation/constructs/actions.dox (added) * src/documentation/constructs/atoms.dox (added) * src/documentation/constructs/bondgraph.dox (added) * src/documentation/constructs/constructs.dox (added) * src/documentation/constructs/descriptors.dox (added) * src/documentation/constructs/fragmentation.dox (added) * src/documentation/constructs/linearalgebra.dox (added) * src/documentation/constructs/logger.dox (added) * src/documentation/constructs/molecules.dox (added) * src/documentation/constructs/observers_observables.dox (added) * src/documentation/constructs/parsers.dox (added) * src/documentation/constructs/randomnumbers.dox (added) * src/documentation/constructs/serialization.dox (added) * src/documentation/constructs/shapes.dox (added) * src/documentation/constructs/tesselation.dox (added) * src/documentation/constructs/world.dox (added) * src/documentation/copyright.dox (added) * src/documentation/faq.dox (added) * src/documentation/fileformats.dox (added) * src/documentation/future.dox (added) * src/documentation/howtos/action.dox (added) * src/documentation/howtos/howtos.dox (added) * src/documentation/install.dox (added) * src/documentation/launch.dox (added) * src/documentation/mainpage.dox (added) * src/documentation/tests/code-tests.dox (added) * src/documentation/tests/regression-tests.dox (added) * src/documentation/tests/tests.dox (added) * src/documentation/tests/unit-tests.dox (added) * src/documentation/userinterfaces/commandline.dox (added) * src/documentation/userinterfaces/graphical.dox (added) * src/documentation/userinterfaces/python.dox (added) * src/documentation/userinterfaces/textmenu.dox (added) * src/documentation/userinterfaces/userinterfaces.dox (added) * tests/CodeChecks/Makefile.am (modified) * tests/CodeChecks/testsuite-config_h.at (modified) * tests/CodeChecks/testsuite-date_in_dox.at (added) * tests/CodeChecks/testsuite-memdebug.at (modified) * tests/CodeChecks/testsuite.at (modified) Merge branch 'Doxygen_Documentation_Enhancement' into mergeMaster Fri, 28 Oct 2011 10:08:45 GMT Frederik Heber [3158e6] * LinearAlgebra/configure.ac (modified) * Makefile.am (modified) * configure.ac (modified) FIX: FIX: broken variable docdir for DX_INIT_DOXYGEN. Wed, 26 Oct 2011 15:02:53 GMT Frederik Heber [07a47e] * configure.ac (modified) * src/Actions/FragmentationAction/FragmentationAction.cpp (modified) * src/Actions/FragmentationAction/FragmentationAction.def (modified) * src/Actions/GraphAction/DepthFirstSearchAction.cpp (modified) * src/Actions/GraphAction/DepthFirstSearchAction.def (modified) * src/Fragmentation/BondsPerShortestPath.cpp (modified) * src/Fragmentation/BondsPerShortestPath.hpp (modified) * src/Fragmentation/Fragmentation.cpp (modified) * src/Fragmentation/Fragmentation.hpp (modified) * src/Fragmentation/HydrogenSaturation_enum.hpp (added) * src/Fragmentation/PowerSetGenerator.cpp (modified) * src/Fragmentation/PowerSetGenerator.hpp (modified) * src/Graph/BreadthFirstSearchAdd.cpp (modified) * src/Graph/BreadthFirstSearchAdd.hpp (modified) * src/Graph/CyclicStructureAnalysis.cpp (modified) * src/Graph/CyclicStructureAnalysis.hpp (modified) * src/MoleculeLeafClass.cpp (modified) * src/MoleculeLeafClass.hpp (modified) * src/molecule.hpp (modified) * src/molecule_geometry.cpp (modified) * src/moleculelist.cpp (modified) Replaced enable/disable-hydrogen by internal switch. - changes in ... Tue, 25 Oct 2011 09:48:21 GMT Frederik Heber [5fd0f4] * configure.ac (modified) Set version to 1.1.5 - Molecuilder library is now 5:1:0. - ... Thu, 20 Oct 2011 22:42:16 GMT Frederik Heber [360c8b] * configure.ac (modified) * src/Actions/MoleculeAction/FillVoidWithMoleculeAction.cpp (modified) * src/Actions/MoleculeAction/FillWithMoleculeAction.cpp (modified) * src/Actions/MoleculeAction/LoadAction.cpp (modified) * src/Actions/ParserAction/ParseTremoloPotentialsAction.cpp (modified) * src/Actions/ParserAction/SetMpqcParametersAction.cpp (modified) * src/Actions/ParserAction/SetTremoloAtomdataAction.cpp (modified) * src/Parser/FormatParser.hpp (modified) * src/Parser/FormatParserInterface.hpp (added) * src/Parser/FormatParserStorage.cpp (modified) * src/Parser/FormatParserStorage.hpp (modified) * src/Parser/FormatParserTrait.hpp (added) * src/Parser/FormatParserTrait_specializations_header.hpp (added) * src/Parser/FormatParser_Parameters.cpp (added) * src/Parser/FormatParser_Parameters.hpp (modified) * src/Parser/FormatParser_common.cpp (moved) * src/Parser/FormatParser_common.hpp (added) * src/Parser/FormatParser_specializations_header.hpp (added) * src/Parser/Makefile.am (modified) * src/Parser/MpqcParser.cpp (modified) * src/Parser/MpqcParser.hpp (modified) * src/Parser/MpqcParser_Parameters.cpp (modified) * src/Parser/MpqcParser_Parameters.hpp (modified) * src/Parser/Parameters/ContinuousParameter.hpp (added) * src/Parser/Parameters/ContinuousParameter_impl.hpp (added) * src/Parser/Parameters/ContinuousValue.hpp (added) * src/Parser/Parameters/ContinuousValue_impl.hpp (added) * src/Parser/Parameters/DiscreteParameter.hpp (added) * src/Parser/Parameters/DiscreteParameter_impl.hpp (added) * src/Parser/Parameters/DiscreteValue.hpp (added) * src/Parser/Parameters/DiscreteValue_impl.hpp (added) * src/Parser/Parameters/Parameter.hpp (added) * src/Parser/Parameters/ParameterStorage.cpp (added) * src/Parser/Parameters/ParameterStorage.hpp (added) * src/Parser/Parameters/StringParameter.cpp (added) * src/Parser/Parameters/StringParameter.hpp (added) * src/Parser/Parameters/ValueInterface.hpp (added) * src/Parser/Parameters/unittests/ContinuousParameterUnitTest.cpp (added) * src/Parser/Parameters/unittests/ContinuousParameterUnitTest.hpp (added) * src/Parser/Parameters/unittests/ContinuousValueUnitTest.cpp (added) * src/Parser/Parameters/unittests/ContinuousValueUnitTest.hpp (added) * src/Parser/Parameters/unittests/DiscreteParameterUnitTest.cpp (added) * src/Parser/Parameters/unittests/DiscreteParameterUnitTest.hpp (added) * src/Parser/Parameters/unittests/DiscreteValueUnitTest.cpp (added) * src/Parser/Parameters/unittests/DiscreteValueUnitTest.hpp (added) * src/Parser/Parameters/unittests/Makefile.am (added) * src/Parser/Parameters/unittests/ParameterStorageUnitTest.cpp (added) * src/Parser/Parameters/unittests/ParameterStorageUnitTest.hpp (added) * src/Parser/Parameters/unittests/StringParameterUnitTest.cpp (added) * src/Parser/Parameters/unittests/StringParameterUnitTest.hpp (added) * src/Parser/ParserTypes.cpp (added) * src/Parser/ParserTypes.def (added) * src/Parser/ParserTypes.hpp (added) * src/Parser/ParserTypes.undef (added) * src/Parser/PcpParser.cpp (modified) * src/Parser/PcpParser.hpp (modified) * src/Parser/PdbAtomInfoContainer.hpp (modified) * src/Parser/PdbParser.cpp (modified) * src/Parser/PdbParser.hpp (modified) * src/Parser/Psi3Parser.cpp (added) * src/Parser/Psi3Parser.hpp (added) * src/Parser/Psi3Parser_Parameters.cpp (added) * src/Parser/Psi3Parser_Parameters.hpp (added) * src/Parser/TremoloParser.cpp (modified) * src/Parser/TremoloParser.hpp (modified) * src/Parser/XyzParser.cpp (modified) * src/Parser/XyzParser.hpp (modified) * src/Parser/unittests/Makefile.am (modified) * src/Parser/unittests/ParserMpqcUnitTest.cpp (modified) * src/Parser/unittests/ParserMpqcUnitTest.hpp (modified) * src/Parser/unittests/ParserPcpUnitTest.cpp (modified) * src/Parser/unittests/ParserPcpUnitTest.hpp (modified) * src/Parser/unittests/ParserPdbUnitTest.cpp (modified) * src/Parser/unittests/ParserPdbUnitTest.hpp (modified) * src/Parser/unittests/ParserPsi3UnitTest.cpp (added) * src/Parser/unittests/ParserPsi3UnitTest.hpp (added) * src/Parser/unittests/ParserTremoloUnitTest.cpp (modified) * src/Parser/unittests/ParserTremoloUnitTest.hpp (modified) * src/Parser/unittests/ParserXyzUnitTest.cpp (modified) * src/Parser/unittests/ParserXyzUnitTest.hpp (modified) * src/atom.cpp (modified) * src/atom.hpp (modified) * src/moleculelist.cpp (modified) * src/unittests/BoxUnitTest.cpp (modified) * src/unittests/FormulaUnitTest.cpp (modified) * tests/regression/Makefile.am (modified) * tests/regression/Parser/Psi3/post/empty.psi (added) * tests/regression/Parser/Psi3/post/test.psi (added) * tests/regression/Parser/Psi3/pre/empty.psi (added) * tests/regression/Parser/Psi3/pre/test.xyz (added) * tests/regression/Parser/Psi3/pre/testrhf.psi (added) * tests/regression/Parser/Psi3/pre/testrohf.psi (added) * tests/regression/Parser/Psi3/pre/testtwocon.psi (added) * tests/regression/Parser/Psi3/pre/testuhf.psi (added) * tests/regression/Parser/Psi3/testsuite-parser-psi3-empty.at (added) * tests/regression/Parser/Psi3/testsuite-parser-psi3-load.at (added) * tests/regression/Parser/Psi3/testsuite-parser-psi3-save.at (added) * tests/regression/Parser/testsuite-parser.at (modified) Merge branch 'Adding_Psi3Parser' into stable Conflicts: ... Tue, 18 Oct 2011 15:42:54 GMT Frederik Heber [942906] * configure.ac (modified) * src/Fragmentation/KeySetsContainer.hpp (modified) * src/Fragmentation/MatrixContainer.hpp (modified) Added serialize() template functions to MatrixContainer and ... Mon, 17 Oct 2011 16:56:37 GMT Frederik Heber [7f570c] * configure.ac (modified) * src/Parser/FormatParser_Parameters.cpp (modified) * src/Parser/FormatParser_Parameters.hpp (modified) * src/Parser/MpqcParser_Parameters.cpp (modified) * src/Parser/MpqcParser_Parameters.hpp (modified) * src/Parser/Psi3Parser_Parameters.cpp (modified) * src/Parser/Psi3Parser_Parameters.hpp (modified) Moved operator<<() and operator>>() from Mpqc/Psi3Parser_Parameters ... Thu, 13 Oct 2011 19:00:40 GMT Frederik Heber [878044] * configure.ac (modified) * tests/Fragmentations/Analyzing/heptan/post/plots/DeltaEnergies-Order.dat (added) * tests/Fragmentations/Analyzing/heptan/post/plots/DeltaEnergies-Order.pyx (added) * tests/Fragmentations/Analyzing/heptan/post/plots/DeltaForces-Order.dat (added) * tests/Fragmentations/Analyzing/heptan/post/plots/DeltaMaxForces-Order.dat (added) * tests/Fragmentations/Analyzing/heptan/post/plots/DeltaMaxForces-Order.pyx (added) * tests/Fragmentations/Analyzing/heptan/post/plots/DeltaMeanForces-Order.dat (added) * tests/Fragmentations/Analyzing/heptan/post/plots/DeltaMeanForces-Order.pyx (added) * tests/Fragmentations/Analyzing/heptan/post/plots/DeltaMinForces-Order.dat (added) * tests/Fragmentations/Analyzing/heptan/post/plots/DeltaMinForces-Order.pyx (added) * tests/Fragmentations/Analyzing/heptan/post/plots/DeltaMinMeanMaxTotalForce-Order.pyx (added) * tests/Fragmentations/Analyzing/heptan/post/plots/DeltaSimTime-Order.dat (added) * tests/Fragmentations/Analyzing/heptan/post/plots/Energies-Fragment.dat (added) * tests/Fragmentations/Analyzing/heptan/post/plots/Energies-Fragment.pyx (added) * tests/Fragmentations/Analyzing/heptan/post/plots/Energies-FragmentOrder.dat (added) * tests/Fragmentations/Analyzing/heptan/post/plots/Energies-FragmentOrder.pyx (added) * tests/Fragmentations/Analyzing/heptan/post/plots/Energies-Order.dat (added) * tests/Fragmentations/Analyzing/heptan/post/plots/Energies-Order.pyx (added) * tests/Fragmentations/Analyzing/heptan/post/plots/Forces-Order.dat (added) * tests/Fragmentations/Analyzing/heptan/post/plots/Makefile (added) * tests/Fragmentations/Analyzing/heptan/post/plots/MaxEnergies-FragmentOrder.dat (added) * tests/Fragmentations/Analyzing/heptan/post/plots/MaxEnergies-FragmentOrder.pyx (added) * tests/Fragmentations/Analyzing/heptan/post/plots/MaxForces-Fragment.dat (added) * tests/Fragmentations/Analyzing/heptan/post/plots/MaxForces-Fragment.pyx (added) * tests/Fragmentations/Analyzing/heptan/post/plots/MaxForces-FragmentOrder.dat (added) * tests/Fragmentations/Analyzing/heptan/post/plots/MaxForces-FragmentOrder.pyx (added) * tests/Fragmentations/Analyzing/heptan/post/plots/MaxForces-Order.dat (added) * tests/Fragmentations/Analyzing/heptan/post/plots/MaxForces-Order.pyx (added) * tests/Fragmentations/Analyzing/heptan/post/plots/MeanForces-Fragment.dat (added) * tests/Fragmentations/Analyzing/heptan/post/plots/MeanForces-Fragment.pyx (added) * tests/Fragmentations/Analyzing/heptan/post/plots/MeanForces-FragmentOrder.dat (added) * tests/Fragmentations/Analyzing/heptan/post/plots/MeanForces-FragmentOrder.pyx (added) * tests/Fragmentations/Analyzing/heptan/post/plots/MeanForces-Order.dat (added) * tests/Fragmentations/Analyzing/heptan/post/plots/MeanForces-Order.pyx (added) * tests/Fragmentations/Analyzing/heptan/post/plots/MinEnergies-FragmentOrder.dat (added) * tests/Fragmentations/Analyzing/heptan/post/plots/MinEnergies-FragmentOrder.pyx (added) * tests/Fragmentations/Analyzing/heptan/post/plots/MinForces-Fragment.dat (added) * tests/Fragmentations/Analyzing/heptan/post/plots/MinForces-Fragment.pyx (added) * tests/Fragmentations/Analyzing/heptan/post/plots/MinForces-FragmentOrder.dat (added) * tests/Fragmentations/Analyzing/heptan/post/plots/MinForces-FragmentOrder.pyx (added) * tests/Fragmentations/Analyzing/heptan/post/plots/MinForces-Order.dat (added) * tests/Fragmentations/Analyzing/heptan/post/plots/MinForces-Order.pyx (added) * tests/Fragmentations/Analyzing/heptan/post/plots/MinMeanMaxTotalForce-Order.pyx (added) * tests/Fragmentations/Analyzing/heptan/post/plots/SimTime-Order.dat (added) * tests/Fragmentations/Analyzing/heptan/post/plots/SimTime-Order.pyx (added) * tests/Fragmentations/Analyzing/heptan/post/plots/VectorSum-Order.dat (added) * tests/Fragmentations/Analyzing/heptan/post/plots/VectorSum-Order.pyx (added) * tests/Fragmentations/Analyzing/heptan/post/plots/energy-forces.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment00/pcp.energy.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment00/pcp.energyfragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment00/pcp.forcefragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment00/pcp.forces.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment00/pcp.speed (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment01/pcp.energy.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment01/pcp.energyfragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment01/pcp.forcefragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment01/pcp.forces.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment01/pcp.speed (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment02/pcp.energy.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment02/pcp.energyfragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment02/pcp.forcefragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment02/pcp.forces.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment02/pcp.speed (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment03/pcp.energy.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment03/pcp.energyfragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment03/pcp.forcefragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment03/pcp.forces.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment03/pcp.speed (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment04/pcp.energy.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment04/pcp.energyfragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment04/pcp.forcefragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment04/pcp.forces.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment04/pcp.speed (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment05/pcp.energy.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment05/pcp.energyfragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment05/pcp.forcefragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment05/pcp.forces.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment05/pcp.speed (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment06/pcp.energy.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment06/pcp.energyfragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment06/pcp.forcefragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment06/pcp.forces.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment06/pcp.speed (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment07/pcp.energy.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment07/pcp.energyfragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment07/pcp.forcefragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment07/pcp.forces.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment07/pcp.speed (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment08/pcp.energy.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment08/pcp.energyfragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment08/pcp.forcefragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment08/pcp.forces.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment08/pcp.speed (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment09/pcp.energy.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment09/pcp.energyfragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment09/pcp.forcefragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment09/pcp.forces.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment09/pcp.speed (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment10/pcp.energy.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment10/pcp.energyfragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment10/pcp.forcefragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment10/pcp.forces.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment10/pcp.speed (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment11/pcp.energy.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment11/pcp.energyfragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment11/pcp.forcefragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment11/pcp.forces.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment11/pcp.speed (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment12/pcp.energy.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment12/pcp.energyfragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment12/pcp.forcefragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment12/pcp.forces.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment12/pcp.speed (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment13/pcp.energy.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment13/pcp.energyfragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment13/pcp.forcefragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment13/pcp.forces.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment13/pcp.speed (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment14/pcp.energy.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment14/pcp.energyfragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment14/pcp.forcefragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment14/pcp.forces.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment14/pcp.speed (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment15/pcp.energy.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment15/pcp.energyfragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment15/pcp.forcefragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment15/pcp.forces.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment15/pcp.speed (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment16/pcp.energy.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment16/pcp.energyfragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment16/pcp.forcefragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment16/pcp.forces.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment16/pcp.speed (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment17/pcp.energy.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment17/pcp.energyfragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment17/pcp.forcefragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment17/pcp.forces.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment17/pcp.speed (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment18/pcp.energy.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment18/pcp.energyfragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment18/pcp.forcefragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment18/pcp.forces.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment18/pcp.speed (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment19/pcp.energy.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment19/pcp.energyfragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment19/pcp.forcefragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment19/pcp.forces.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment19/pcp.speed (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment20/pcp.energy.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment20/pcp.energyfragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment20/pcp.forcefragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment20/pcp.forces.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment20/pcp.speed (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment21/pcp.energy.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment21/pcp.energyfragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment21/pcp.forcefragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment21/pcp.forces.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragment21/pcp.speed (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragmentForces-Factors.dat (moved) * tests/Fragmentations/Analyzing/heptan/pre/BondFragmentKeySets.dat (moved) * tests/Fragmentations/Analyzing/heptan/pre/pcp.Order1.energy.all (added) * tests/Fragmentations/Analyzing/heptan/pre/pcp.Order1.forces.all (added) * tests/Fragmentations/Analyzing/heptan/pre/pcp.Order2.energy.all (added) * tests/Fragmentations/Analyzing/heptan/pre/pcp.Order2.forces.all (added) * tests/Fragmentations/Analyzing/heptan/pre/pcp.Order3.energy.all (added) * tests/Fragmentations/Analyzing/heptan/pre/pcp.Order3.forces.all (added) * tests/Fragmentations/Analyzing/heptan/pre/pcp.Order4.energy.all (added) * tests/Fragmentations/Analyzing/heptan/pre/pcp.Order4.forces.all (added) * tests/Fragmentations/Analyzing/heptan/pre/pcp.energy.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/pcp.energyfragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/pcp.forcefragment.all (added) * tests/Fragmentations/Analyzing/heptan/pre/pcp.forces.all (moved) * tests/Fragmentations/Analyzing/heptan/pre/pcp.speed (moved) * tests/Fragmentations/Analyzing/heptan/testsuite-analyzing-heptan.at (added) * tests/Fragmentations/Fragmenting/1_2-dimethoxyethane/pre/1_2-dimethoxyethane.xyz (moved) * tests/Fragmentations/Fragmenting/1_2-dimethoxyethane/testsuite-fragmenting-1_2-dimethoxyethane-order1.at (moved) * tests/Fragmentations/Fragmenting/1_2-dimethoxyethane/testsuite-fragmenting-1_2-dimethoxyethane-order2.at (moved) * tests/Fragmentations/Fragmenting/1_2-dimethoxyethane/testsuite-fragmenting-1_2-dimethoxyethane-order3.at (moved) * tests/Fragmentations/Fragmenting/1_2-dimethoxyethane/testsuite-fragmenting-1_2-dimethoxyethane-order4.at (moved) * tests/Fragmentations/Fragmenting/1_2-dimethylbenzene/pre/1_2-dimethylbenzene.xyz (moved) * tests/Fragmentations/Fragmenting/1_2-dimethylbenzene/testsuite-fragmenting-1_2-dimethylbenzene-order1.at (moved) * tests/Fragmentations/Fragmenting/1_2-dimethylbenzene/testsuite-fragmenting-1_2-dimethylbenzene-order2.at (moved) * tests/Fragmentations/Fragmenting/1_2-dimethylbenzene/testsuite-fragmenting-1_2-dimethylbenzene-order3.at (moved) * tests/Fragmentations/Fragmenting/1_2-dimethylbenzene/testsuite-fragmenting-1_2-dimethylbenzene-order4.at (moved) * tests/Fragmentations/Fragmenting/2-methylcyclohexanone/pre/2-methylcyclohexanone.xyz (moved) * tests/Fragmentations/Fragmenting/2-methylcyclohexanone/testsuite-fragmenting-2-methylcyclohexanone-order1.at (moved) * tests/Fragmentations/Fragmenting/2-methylcyclohexanone/testsuite-fragmenting-2-methylcyclohexanone-order2.at (moved) * tests/Fragmentations/Fragmenting/2-methylcyclohexanone/testsuite-fragmenting-2-methylcyclohexanone-order3.at (moved) * tests/Fragmentations/Fragmenting/2-methylcyclohexanone/testsuite-fragmenting-2-methylcyclohexanone-order4.at (moved) * tests/Fragmentations/Fragmenting/2-methylcyclohexanone/testsuite-fragmenting-2-methylcyclohexanone-order5.at (moved) * tests/Fragmentations/Fragmenting/2-methylcyclohexanone/testsuite-fragmenting-2-methylcyclohexanone-order6.at (moved) * tests/Fragmentations/Fragmenting/N_N-dimethylacetamide/pre/N_N-dimethylacetamide.xyz (moved) * tests/Fragmentations/Fragmenting/N_N-dimethylacetamide/testsuite-fragmenting-N_N-dimethylacetamide-order1.at (moved) * tests/Fragmentations/Fragmenting/N_N-dimethylacetamide/testsuite-fragmenting-N_N-dimethylacetamide-order2.at (moved) * tests/Fragmentations/Fragmenting/N_N-dimethylacetamide/testsuite-fragmenting-N_N-dimethylacetamide-order3.at (moved) * tests/Fragmentations/Fragmenting/N_N-dimethylacetamide/testsuite-fragmenting-N_N-dimethylacetamide-order4.at (moved) * tests/Fragmentations/Fragmenting/N_N-dimethylacetamide/testsuite-fragmenting-N_N-dimethylacetamide-order5.at (moved) * tests/Fragmentations/Fragmenting/N_N-dimethylacetamide/testsuite-fragmenting-N_N-dimethylacetamide-order6.at (moved) * tests/Fragmentations/Fragmenting/benzene/pre/benzene.xyz (moved) * tests/Fragmentations/Fragmenting/benzene/testsuite-fragmenting-benzene-order1.at (moved) * tests/Fragmentations/Fragmenting/benzene/testsuite-fragmenting-benzene-order2.at (moved) * tests/Fragmentations/Fragmenting/benzene/testsuite-fragmenting-benzene-order3.at (moved) * tests/Fragmentations/Fragmenting/benzene/testsuite-fragmenting-benzene-order4.at (moved) * tests/Fragmentations/Fragmenting/benzene/testsuite-fragmenting-benzene-order5.at (moved) * tests/Fragmentations/Fragmenting/benzene/testsuite-fragmenting-benzene-order6.at (moved) * tests/Fragmentations/Fragmenting/cholesterol/pre/cholesterol.xyz (moved) * tests/Fragmentations/Fragmenting/cholesterol/testsuite-fragmenting-cholesterol-order1.at (moved) * tests/Fragmentations/Fragmenting/cholesterol/testsuite-fragmenting-cholesterol-order2.at (moved) * tests/Fragmentations/Fragmenting/cholesterol/testsuite-fragmenting-cholesterol-order3.at (moved) * tests/Fragmentations/Fragmenting/cholesterol/testsuite-fragmenting-cholesterol-order4.at (moved) * tests/Fragmentations/Fragmenting/cholesterol/testsuite-fragmenting-cholesterol-order5.at (moved) * tests/Fragmentations/Fragmenting/cholesterol/testsuite-fragmenting-cholesterol-order6.at (moved) * tests/Fragmentations/Fragmenting/cycloheptane/pre/cycloheptane.xyz (moved) * tests/Fragmentations/Fragmenting/cycloheptane/testsuite-fragmenting-cycloheptane-order1.at (moved) * tests/Fragmentations/Fragmenting/cycloheptane/testsuite-fragmenting-cycloheptane-order2.at (moved) * tests/Fragmentations/Fragmenting/cycloheptane/testsuite-fragmenting-cycloheptane-order3.at (moved) * tests/Fragmentations/Fragmenting/cycloheptane/testsuite-fragmenting-cycloheptane-order4.at (moved) * tests/Fragmentations/Fragmenting/cycloheptane/testsuite-fragmenting-cycloheptane-order5.at (moved) * tests/Fragmentations/Fragmenting/cycloheptane/testsuite-fragmenting-cycloheptane-order6.at (moved) * tests/Fragmentations/Fragmenting/dimethyl_bromomalonate/pre/dimethyl_bromomalonate.xyz (moved) * tests/Fragmentations/Fragmenting/dimethyl_bromomalonate/testsuite-fragmenting-dimethyl_bromomalonate-order1.at (moved) * tests/Fragmentations/Fragmenting/dimethyl_bromomalonate/testsuite-fragmenting-dimethyl_bromomalonate-order2.at (moved) * tests/Fragmentations/Fragmenting/dimethyl_bromomalonate/testsuite-fragmenting-dimethyl_bromomalonate-order3.at (moved) * tests/Fragmentations/Fragmenting/dimethyl_bromomalonate/testsuite-fragmenting-dimethyl_bromomalonate-order4.at (moved) * tests/Fragmentations/Fragmenting/dimethyl_bromomalonate/testsuite-fragmenting-dimethyl_bromomalonate-order5.at (moved) * tests/Fragmentations/Fragmenting/dimethyl_bromomalonate/testsuite-fragmenting-dimethyl_bromomalonate-order6.at (moved) * tests/Fragmentations/Fragmenting/glucose/pre/glucose.xyz (moved) * tests/Fragmentations/Fragmenting/glucose/testsuite-fragmenting-glucose-order1.at (moved) * tests/Fragmentations/Fragmenting/glucose/testsuite-fragmenting-glucose-order2.at (moved) * tests/Fragmentations/Fragmenting/glucose/testsuite-fragmenting-glucose-order3.at (moved) * tests/Fragmentations/Fragmenting/glucose/testsuite-fragmenting-glucose-order4.at (moved) * tests/Fragmentations/Fragmenting/glucose/testsuite-fragmenting-glucose-order5.at (moved) * tests/Fragmentations/Fragmenting/glucose/testsuite-fragmenting-glucose-order6.at (moved) * tests/Fragmentations/Fragmenting/heptan/pre/heptan.xyz (moved) * tests/Fragmentations/Fragmenting/heptan/testsuite-fragmenting-heptan-order1.at (moved) * tests/Fragmentations/Fragmenting/heptan/testsuite-fragmenting-heptan-order2.at (moved) * tests/Fragmentations/Fragmenting/heptan/testsuite-fragmenting-heptan-order3.at (moved) * tests/Fragmentations/Fragmenting/heptan/testsuite-fragmenting-heptan-order4.at (moved) * tests/Fragmentations/Fragmenting/heptan/testsuite-fragmenting-heptan-order5.at (moved) * tests/Fragmentations/Fragmenting/heptan/testsuite-fragmenting-heptan-order6.at (moved) * tests/Fragmentations/Fragmenting/isoleucine/pre/isoleucine.xyz (moved) * tests/Fragmentations/Fragmenting/isoleucine/testsuite-fragmenting-isoleucine-order1.at (moved) * tests/Fragmentations/Fragmenting/isoleucine/testsuite-fragmenting-isoleucine-order2.at (moved) * tests/Fragmentations/Fragmenting/isoleucine/testsuite-fragmenting-isoleucine-order3.at (moved) * tests/Fragmentations/Fragmenting/isoleucine/testsuite-fragmenting-isoleucine-order4.at (moved) * tests/Fragmentations/Fragmenting/isoleucine/testsuite-fragmenting-isoleucine-order5.at (moved) * tests/Fragmentations/Fragmenting/isoleucine/testsuite-fragmenting-isoleucine-order6.at (moved) * tests/Fragmentations/Fragmenting/neohexane/pre/neohexane.xyz (moved) * tests/Fragmentations/Fragmenting/neohexane/testsuite-fragmenting-neohexane-order1.at (moved) * tests/Fragmentations/Fragmenting/neohexane/testsuite-fragmenting-neohexane-order2.at (moved) * tests/Fragmentations/Fragmenting/neohexane/testsuite-fragmenting-neohexane-order3.at (moved) * tests/Fragmentations/Fragmenting/neohexane/testsuite-fragmenting-neohexane-order4.at (moved) * tests/Fragmentations/Fragmenting/neohexane/testsuite-fragmenting-neohexane-order5.at (moved) * tests/Fragmentations/Fragmenting/neohexane/testsuite-fragmenting-neohexane-order6.at (moved) * tests/Fragmentations/Fragmenting/proline/pre/proline.xyz (moved) * tests/Fragmentations/Fragmenting/proline/testsuite-fragmenting-proline-order1.at (moved) * tests/Fragmentations/Fragmenting/proline/testsuite-fragmenting-proline-order2.at (moved) * tests/Fragmentations/Fragmenting/proline/testsuite-fragmenting-proline-order3.at (moved) * tests/Fragmentations/Fragmenting/proline/testsuite-fragmenting-proline-order4.at (moved) * tests/Fragmentations/Fragmenting/proline/testsuite-fragmenting-proline-order5.at (moved) * tests/Fragmentations/Fragmenting/proline/testsuite-fragmenting-proline-order6.at (moved) * tests/Fragmentations/Fragmenting/putrescine/pre/putrescine.xyz (moved) * tests/Fragmentations/Fragmenting/putrescine/testsuite-fragmenting-putrescine-order1.at (moved) * tests/Fragmentations/Fragmenting/putrescine/testsuite-fragmenting-putrescine-order2.at (moved) * tests/Fragmentations/Fragmenting/putrescine/testsuite-fragmenting-putrescine-order3.at (moved) * tests/Fragmentations/Fragmenting/putrescine/testsuite-fragmenting-putrescine-order4.at (moved) * tests/Fragmentations/Fragmenting/putrescine/testsuite-fragmenting-putrescine-order5.at (moved) * tests/Fragmentations/Fragmenting/putrescine/testsuite-fragmenting-putrescine-order6.at (moved) * tests/Fragmentations/Fragmenting/tartaric_acid/pre/tartaric_acid.xyz (moved) * tests/Fragmentations/Fragmenting/tartaric_acid/testsuite-fragmenting-tartaric_acid-order1.at (moved) * tests/Fragmentations/Fragmenting/tartaric_acid/testsuite-fragmenting-tartaric_acid-order2.at (moved) * tests/Fragmentations/Fragmenting/tartaric_acid/testsuite-fragmenting-tartaric_acid-order3.at (moved) * tests/Fragmentations/Fragmenting/tartaric_acid/testsuite-fragmenting-tartaric_acid-order4.at (moved) * tests/Fragmentations/Fragmenting/tartaric_acid/testsuite-fragmenting-tartaric_acid-order5.at (moved) * tests/Fragmentations/Fragmenting/tartaric_acid/testsuite-fragmenting-tartaric_acid-order6.at (moved) * tests/Fragmentations/Joining/heptan/post/BondFragment00/pcp.energyfragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment00/pcp.forcefragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment01/pcp.energyfragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment01/pcp.forcefragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment02/pcp.energyfragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment02/pcp.forcefragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment03/pcp.energyfragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment03/pcp.forcefragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment04/pcp.energyfragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment04/pcp.forcefragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment05/pcp.energyfragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment05/pcp.forcefragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment06/pcp.energyfragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment06/pcp.forcefragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment07/pcp.energyfragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment07/pcp.forcefragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment08/pcp.energyfragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment08/pcp.forcefragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment09/pcp.energyfragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment09/pcp.forcefragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment10/pcp.energyfragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment10/pcp.forcefragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment11/pcp.energyfragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment11/pcp.forcefragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment12/pcp.energyfragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment12/pcp.forcefragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment13/pcp.energyfragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment13/pcp.forcefragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment14/pcp.energyfragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment14/pcp.forcefragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment15/pcp.energyfragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment15/pcp.forcefragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment16/pcp.energyfragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment16/pcp.forcefragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment17/pcp.energyfragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment17/pcp.forcefragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment18/pcp.energyfragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment18/pcp.forcefragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment19/pcp.energyfragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment19/pcp.forcefragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment20/pcp.energyfragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment20/pcp.forcefragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment21/pcp.energyfragment.all (added) * tests/Fragmentations/Joining/heptan/post/BondFragment21/pcp.forcefragment.all (added) * tests/Fragmentations/Joining/heptan/post/pcp.Order1.energy.all (added) * tests/Fragmentations/Joining/heptan/post/pcp.Order1.forces.all (added) * tests/Fragmentations/Joining/heptan/post/pcp.Order2.energy.all (added) * tests/Fragmentations/Joining/heptan/post/pcp.Order2.forces.all (added) * tests/Fragmentations/Joining/heptan/post/pcp.Order3.energy.all (added) * tests/Fragmentations/Joining/heptan/post/pcp.Order3.forces.all (added) * tests/Fragmentations/Joining/heptan/post/pcp.Order4.energy.all (added) * tests/Fragmentations/Joining/heptan/post/pcp.Order4.forces.all (added) * tests/Fragmentations/Joining/heptan/post/pcp.energyfragment.all (added) * tests/Fragmentations/Joining/heptan/post/pcp.forcefragment.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment00/pcp.energy.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment00/pcp.forces.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment00/pcp.speed (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment01/pcp.energy.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment01/pcp.forces.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment01/pcp.speed (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment02/pcp.energy.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment02/pcp.forces.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment02/pcp.speed (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment03/pcp.energy.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment03/pcp.forces.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment03/pcp.speed (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment04/pcp.energy.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment04/pcp.forces.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment04/pcp.speed (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment05/pcp.energy.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment05/pcp.forces.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment05/pcp.speed (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment06/pcp.energy.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment06/pcp.forces.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment06/pcp.speed (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment07/pcp.energy.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment07/pcp.forces.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment07/pcp.speed (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment08/pcp.energy.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment08/pcp.forces.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment08/pcp.speed (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment09/pcp.energy.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment09/pcp.forces.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment09/pcp.speed (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment10/pcp.energy.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment10/pcp.forces.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment10/pcp.speed (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment11/pcp.energy.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment11/pcp.forces.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment11/pcp.speed (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment12/pcp.energy.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment12/pcp.forces.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment12/pcp.speed (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment13/pcp.energy.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment13/pcp.forces.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment13/pcp.speed (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment14/pcp.energy.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment14/pcp.forces.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment14/pcp.speed (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment15/pcp.energy.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment15/pcp.forces.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment15/pcp.speed (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment16/pcp.energy.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment16/pcp.forces.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment16/pcp.speed (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment17/pcp.energy.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment17/pcp.forces.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment17/pcp.speed (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment18/pcp.energy.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment18/pcp.forces.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment18/pcp.speed (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment19/pcp.energy.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment19/pcp.forces.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment19/pcp.speed (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment20/pcp.energy.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment20/pcp.forces.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment20/pcp.speed (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment21/pcp.energy.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment21/pcp.forces.all (added) * tests/Fragmentations/Joining/heptan/pre/BondFragment21/pcp.speed (added) * tests/Fragmentations/Joining/heptan/pre/BondFragmentForces-Factors.dat (added) * tests/Fragmentations/Joining/heptan/pre/BondFragmentKeySets.dat (added) * tests/Fragmentations/Joining/heptan/pre/pcp.energy.all (added) * tests/Fragmentations/Joining/heptan/pre/pcp.forces.all (added) * tests/Fragmentations/Joining/heptan/pre/pcp.speed (added) * tests/Fragmentations/Joining/heptan/testsuite-joining-heptan.at (added) * tests/Fragmentations/Makefile.am (modified) * tests/Fragmentations/analyzer.in (added) * tests/Fragmentations/joiner.in (added) * tests/Fragmentations/testsuite.at (modified) * tests/Makefile.am (modified) Added (simple) regression tests for joiner and analyzer for heptan. ... Thu, 13 Oct 2011 13:03:40 GMT Frederik Heber [e0f8c8] * configure.ac (modified) Set version to 1.1.4. - FIX: Removed AC_SUBST for LinearAlgebra ... Mon, 10 Oct 2011 16:58:25 GMT Frederik Heber [d7d022] * configure.ac (modified) * src/UIElements/Makefile.am (modified) * src/element.cpp (modified) * src/element.hpp (modified) * src/unittests/ElementUnitTest.cpp (added) * src/unittests/ElementUnitTest.hpp (added) * src/unittests/Makefile.am (modified) Added serialization functionality to class element. - also added ... Mon, 10 Oct 2011 16:58:24 GMT Frederik Heber [f08ae7] * LinearAlgebra/configure.ac (modified) * LinearAlgebra/src/LinearAlgebra/Makefile.am (modified) * LinearAlgebra/src/unittests/Makefile.am (modified) * configure.ac (modified) * m4/ax_codepatterns.m4 (modified) * m4/boost.m4 (modified) * src/Actions/unittests/Makefile.am (modified) * src/Makefile.am (modified) * src/RandomNumbers/Makefile.am (modified) * src/RandomNumbers/unittests/Makefile.am (modified) * src/UIElements/Makefile.am (modified) * src/unittests/Makefile.am (modified) Extension of usage of Tsuna's boost.m4 macro. - boost.m4 from ... Thu, 06 Oct 2011 16:06:10 GMT Frederik Heber [7188b1] * configure.ac (modified) * src/Makefile.am (modified) * src/UIElements/Makefile.am (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_bond.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_bond.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeScene.cpp (deleted) * src/UIElements/Views/Qt4/Qt3D/GLMoleculeScene.hpp (deleted) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldScene.hpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldView.cpp (modified) * src/UIElements/Views/Qt4/Qt3D/GLWorldView.hpp (modified) * src/World.cpp (modified) * src/World.hpp (modified) * src/atom_atominfo.cpp (modified) * src/atom_atominfo.hpp (modified) * src/atom_bondedparticleinfo.cpp (modified) * src/atom_bondedparticleinfo.hpp (modified) * src/atom_observable.cpp (added) * src/atom_observable.hpp (added) * src/atom_particleinfo.cpp (modified) * src/atom_particleinfo.hpp (modified) Introduced atom_observables and GLWorldView observes World, ... Thu, 06 Oct 2011 12:08:31 GMT Frederik Heber [060ba4] * configure.ac (modified) * m4/bnv_have_qt.m4 (added) * m4/gwqt4.m4 (deleted) * src/UIElements/Makefile.am (modified) Replaced m4 macro gwqt4.m4 by bnv_have_qt.m4 - as is used with ... Wed, 05 Oct 2011 09:18:20 GMT Frederik Heber [c4cde1] * configure.ac (modified) Set version to 1.1.3. - Codename "Donald Duck" (the license plate ... Wed, 05 Oct 2011 09:16:04 GMT Frederik Heber [740d40] * configure.ac (modified) * tests/Fragmentations/1_2-dimethoxyethane.test (deleted) * tests/Fragmentations/1_2-dimethoxyethane/pre/1_2-dimethoxyethane.xyz (moved) * tests/Fragmentations/1_2-dimethoxyethane/testsuite-1_2-dimethoxyethane-order1.at (added) * tests/Fragmentations/1_2-dimethoxyethane/testsuite-1_2-dimethoxyethane-order2.at (added) * tests/Fragmentations/1_2-dimethoxyethane/testsuite-1_2-dimethoxyethane-order3.at (added) * tests/Fragmentations/1_2-dimethoxyethane/testsuite-1_2-dimethoxyethane-order4.at (added) * tests/Fragmentations/1_2-dimethylbenzene.test (deleted) * tests/Fragmentations/1_2-dimethylbenzene/pre/1_2-dimethylbenzene.xyz (moved) * tests/Fragmentations/1_2-dimethylbenzene/testsuite-1_2-dimethylbenzene-order1.at (added) * tests/Fragmentations/1_2-dimethylbenzene/testsuite-1_2-dimethylbenzene-order2.at (added) * tests/Fragmentations/1_2-dimethylbenzene/testsuite-1_2-dimethylbenzene-order3.at (added) * tests/Fragmentations/1_2-dimethylbenzene/testsuite-1_2-dimethylbenzene-order4.at (added) * tests/Fragmentations/2-methylcyclohexanone.test (deleted) * tests/Fragmentations/2-methylcyclohexanone/pre/2-methylcyclohexanone.xyz (moved) * tests/Fragmentations/2-methylcyclohexanone/testsuite-2-methylcyclohexanone-order1.at (added) * tests/Fragmentations/2-methylcyclohexanone/testsuite-2-methylcyclohexanone-order2.at (added) * tests/Fragmentations/2-methylcyclohexanone/testsuite-2-methylcyclohexanone-order3.at (added) * tests/Fragmentations/2-methylcyclohexanone/testsuite-2-methylcyclohexanone-order4.at (added) * tests/Fragmentations/2-methylcyclohexanone/testsuite-2-methylcyclohexanone-order5.at (added) * tests/Fragmentations/2-methylcyclohexanone/testsuite-2-methylcyclohexanone-order6.at (added) * tests/Fragmentations/Makefile.am (modified) * tests/Fragmentations/N_N-dimethylacetamide.test (deleted) * tests/Fragmentations/N_N-dimethylacetamide/pre/N_N-dimethylacetamide.xyz (moved) * tests/Fragmentations/N_N-dimethylacetamide/testsuite-N_N-dimethylacetamide-order1.at (added) * tests/Fragmentations/N_N-dimethylacetamide/testsuite-N_N-dimethylacetamide-order2.at (added) * tests/Fragmentations/N_N-dimethylacetamide/testsuite-N_N-dimethylacetamide-order3.at (added) * tests/Fragmentations/N_N-dimethylacetamide/testsuite-N_N-dimethylacetamide-order4.at (added) * tests/Fragmentations/N_N-dimethylacetamide/testsuite-N_N-dimethylacetamide-order5.at (added) * tests/Fragmentations/N_N-dimethylacetamide/testsuite-N_N-dimethylacetamide-order6.at (added) * tests/Fragmentations/atlocal.in (added) * tests/Fragmentations/benzene.test (deleted) * tests/Fragmentations/benzene/pre/benzene.xyz (moved) * tests/Fragmentations/benzene/testsuite-benzene-order1.at (added) * tests/Fragmentations/benzene/testsuite-benzene-order2.at (added) * tests/Fragmentations/benzene/testsuite-benzene-order3.at (added) * tests/Fragmentations/benzene/testsuite-benzene-order4.at (added) * tests/Fragmentations/benzene/testsuite-benzene-order5.at (added) * tests/Fragmentations/benzene/testsuite-benzene-order6.at (added) * tests/Fragmentations/cholesterol.test (deleted) * tests/Fragmentations/cholesterol/pre/cholesterol.xyz (moved) * tests/Fragmentations/cholesterol/testsuite-cholesterol-order1.at (added) * tests/Fragmentations/cholesterol/testsuite-cholesterol-order2.at (added) * tests/Fragmentations/cholesterol/testsuite-cholesterol-order3.at (added) * tests/Fragmentations/cholesterol/testsuite-cholesterol-order4.at (added) * tests/Fragmentations/cholesterol/testsuite-cholesterol-order5.at (added) * tests/Fragmentations/cholesterol/testsuite-cholesterol-order6.at (added) * tests/Fragmentations/cycloheptane.test (deleted) * tests/Fragmentations/cycloheptane/pre/cycloheptane.xyz (moved) * tests/Fragmentations/cycloheptane/testsuite-cycloheptane-order1.at (added) * tests/Fragmentations/cycloheptane/testsuite-cycloheptane-order2.at (added) * tests/Fragmentations/cycloheptane/testsuite-cycloheptane-order3.at (added) * tests/Fragmentations/cycloheptane/testsuite-cycloheptane-order4.at (added) * tests/Fragmentations/cycloheptane/testsuite-cycloheptane-order5.at (added) * tests/Fragmentations/cycloheptane/testsuite-cycloheptane-order6.at (added) * tests/Fragmentations/defs.in (deleted) * tests/Fragmentations/dimethyl_bromomalonate.test (deleted) * tests/Fragmentations/dimethyl_bromomalonate/pre/dimethyl_bromomalonate.xyz (moved) * tests/Fragmentations/dimethyl_bromomalonate/testsuite-dimethyl_bromomalonate-order1.at (added) * tests/Fragmentations/dimethyl_bromomalonate/testsuite-dimethyl_bromomalonate-order2.at (added) * tests/Fragmentations/dimethyl_bromomalonate/testsuite-dimethyl_bromomalonate-order3.at (added) * tests/Fragmentations/dimethyl_bromomalonate/testsuite-dimethyl_bromomalonate-order4.at (added) * tests/Fragmentations/dimethyl_bromomalonate/testsuite-dimethyl_bromomalonate-order5.at (added) * tests/Fragmentations/dimethyl_bromomalonate/testsuite-dimethyl_bromomalonate-order6.at (added) * tests/Fragmentations/glucose.test (deleted) * tests/Fragmentations/glucose/pre/glucose.xyz (moved) * tests/Fragmentations/glucose/testsuite-glucose-order1.at (added) * tests/Fragmentations/glucose/testsuite-glucose-order2.at (added) * tests/Fragmentations/glucose/testsuite-glucose-order3.at (added) * tests/Fragmentations/glucose/testsuite-glucose-order4.at (added) * tests/Fragmentations/glucose/testsuite-glucose-order5.at (added) * tests/Fragmentations/glucose/testsuite-glucose-order6.at (added) * tests/Fragmentations/heptan.test (deleted) * tests/Fragmentations/heptan/pre/heptan.xyz (moved) * tests/Fragmentations/heptan/testsuite-heptan-order1.at (added) * tests/Fragmentations/heptan/testsuite-heptan-order2.at (added) * tests/Fragmentations/heptan/testsuite-heptan-order3.at (added) * tests/Fragmentations/heptan/testsuite-heptan-order4.at (added) * tests/Fragmentations/heptan/testsuite-heptan-order5.at (added) * tests/Fragmentations/heptan/testsuite-heptan-order6.at (added) * tests/Fragmentations/isoleucine.test (deleted) * tests/Fragmentations/isoleucine/pre/isoleucine.xyz (moved) * tests/Fragmentations/isoleucine/testsuite-isoleucine-order1.at (added) * tests/Fragmentations/isoleucine/testsuite-isoleucine-order2.at (added) * tests/Fragmentations/isoleucine/testsuite-isoleucine-order3.at (added) * tests/Fragmentations/isoleucine/testsuite-isoleucine-order4.at (added) * tests/Fragmentations/isoleucine/testsuite-isoleucine-order5.at (added) * tests/Fragmentations/isoleucine/testsuite-isoleucine-order6.at (added) * tests/Fragmentations/molecuilder.in (added) * tests/Fragmentations/neohexane.test (deleted) * tests/Fragmentations/neohexane/pre/neohexane.xyz (moved) * tests/Fragmentations/neohexane/testsuite-neohexane-order1.at (added) * tests/Fragmentations/neohexane/testsuite-neohexane-order2.at (added) * tests/Fragmentations/neohexane/testsuite-neohexane-order3.at (added) * tests/Fragmentations/neohexane/testsuite-neohexane-order4.at (added) * tests/Fragmentations/neohexane/testsuite-neohexane-order5.at (added) * tests/Fragmentations/neohexane/testsuite-neohexane-order6.at (added) * tests/Fragmentations/proline.test (deleted) * tests/Fragmentations/proline/pre/proline.xyz (moved) * tests/Fragmentations/proline/testsuite-proline-order1.at (added) * tests/Fragmentations/proline/testsuite-proline-order2.at (added) * tests/Fragmentations/proline/testsuite-proline-order3.at (added) * tests/Fragmentations/proline/testsuite-proline-order4.at (added) * tests/Fragmentations/proline/testsuite-proline-order5.at (added) * tests/Fragmentations/proline/testsuite-proline-order6.at (added) * tests/Fragmentations/putrescine.test (deleted) * tests/Fragmentations/putrescine/pre/putrescine.xyz (moved) * tests/Fragmentations/putrescine/testsuite-putrescine-order1.at (added) * tests/Fragmentations/putrescine/testsuite-putrescine-order2.at (added) * tests/Fragmentations/putrescine/testsuite-putrescine-order3.at (added) * tests/Fragmentations/putrescine/testsuite-putrescine-order4.at (added) * tests/Fragmentations/putrescine/testsuite-putrescine-order5.at (added) * tests/Fragmentations/putrescine/testsuite-putrescine-order6.at (added) * tests/Fragmentations/tartaric_acid.test (deleted) * tests/Fragmentations/tartaric_acid/pre/tartaric_acid.xyz (moved) * tests/Fragmentations/tartaric_acid/testsuite-tartaric_acid-order1.at (added) * tests/Fragmentations/tartaric_acid/testsuite-tartaric_acid-order2.at (added) * tests/Fragmentations/tartaric_acid/testsuite-tartaric_acid-order3.at (added) * tests/Fragmentations/tartaric_acid/testsuite-tartaric_acid-order4.at (added) * tests/Fragmentations/tartaric_acid/testsuite-tartaric_acid-order5.at (added) * tests/Fragmentations/tartaric_acid/testsuite-tartaric_acid-order6.at (added) * tests/Fragmentations/testsuite.at (added) Rewrote tests/Fragmentations with autotest test driver. Wed, 05 Oct 2011 08:18:07 GMT Frederik Heber [689639] * LinearAlgebra/configure.ac (modified) * LinearAlgebra/tests/CodeChecks/Makefile.am (modified) * configure.ac (modified) * tests/CodeChecks/Makefile.am (modified) * tests/Tesselations/Makefile.am (modified) * tests/regression/Makefile.am (modified) DISTCHECKFIX: Smaller changes to tests/regression Makefile.am and in ... Wed, 05 Oct 2011 08:18:03 GMT Frederik Heber [a85f45] * configure.ac (modified) * tests/Tesselations/1_2-dimethoxyethane.test (deleted) * tests/Tesselations/1_2-dimethoxyethane/post/NonConvexEnvelope-1_2-dimethoxyethane-1.5.dat (moved) * tests/Tesselations/1_2-dimethoxyethane/post/NonConvexEnvelope-1_2-dimethoxyethane-2.5.dat (moved) * tests/Tesselations/1_2-dimethoxyethane/post/NonConvexEnvelope-1_2-dimethoxyethane-2.dat (moved) * tests/Tesselations/1_2-dimethoxyethane/post/NonConvexEnvelope-1_2-dimethoxyethane-25.dat (moved) * tests/Tesselations/1_2-dimethoxyethane/post/NonConvexEnvelope-1_2-dimethoxyethane-3.5.dat (moved) * tests/Tesselations/1_2-dimethoxyethane/post/NonConvexEnvelope-1_2-dimethoxyethane-3.dat (moved) * tests/Tesselations/1_2-dimethoxyethane/post/NonConvexEnvelope-1_2-dimethoxyethane-4.dat (moved) * tests/Tesselations/1_2-dimethoxyethane/pre/1_2-dimethoxyethane.xyz (moved) * tests/Tesselations/1_2-dimethoxyethane/testsuite-1_2-dimethoxyethane.at (added) * tests/Tesselations/1_2-dimethylbenzene.test (deleted) * tests/Tesselations/1_2-dimethylbenzene/post/NonConvexEnvelope-1_2-dimethylbenzene-1.5.dat (moved) * tests/Tesselations/1_2-dimethylbenzene/post/NonConvexEnvelope-1_2-dimethylbenzene-2.5.dat (moved) * tests/Tesselations/1_2-dimethylbenzene/post/NonConvexEnvelope-1_2-dimethylbenzene-2.dat (moved) * tests/Tesselations/1_2-dimethylbenzene/post/NonConvexEnvelope-1_2-dimethylbenzene-25.dat (moved) * tests/Tesselations/1_2-dimethylbenzene/post/NonConvexEnvelope-1_2-dimethylbenzene-3.5.dat (moved) * tests/Tesselations/1_2-dimethylbenzene/post/NonConvexEnvelope-1_2-dimethylbenzene-3.dat (moved) * tests/Tesselations/1_2-dimethylbenzene/post/NonConvexEnvelope-1_2-dimethylbenzene-4.dat (moved) * tests/Tesselations/1_2-dimethylbenzene/pre/1_2-dimethylbenzene.xyz (moved) * tests/Tesselations/1_2-dimethylbenzene/testsuite-1_2-dimethylbenzene.at (added) * tests/Tesselations/2-methylcyclohexanone.test (deleted) * tests/Tesselations/2-methylcyclohexanone/post/NonConvexEnvelope-2-methylcyclohexanone-1.5.dat (moved) * tests/Tesselations/2-methylcyclohexanone/post/NonConvexEnvelope-2-methylcyclohexanone-2.5.dat (moved) * tests/Tesselations/2-methylcyclohexanone/post/NonConvexEnvelope-2-methylcyclohexanone-2.dat (moved) * tests/Tesselations/2-methylcyclohexanone/post/NonConvexEnvelope-2-methylcyclohexanone-25.dat (moved) * tests/Tesselations/2-methylcyclohexanone/post/NonConvexEnvelope-2-methylcyclohexanone-3.5.dat (moved) * tests/Tesselations/2-methylcyclohexanone/post/NonConvexEnvelope-2-methylcyclohexanone-3.dat (moved) * tests/Tesselations/2-methylcyclohexanone/post/NonConvexEnvelope-2-methylcyclohexanone-4.dat (moved) * tests/Tesselations/2-methylcyclohexanone/pre/2-methylcyclohexanone.xyz (moved) * tests/Tesselations/2-methylcyclohexanone/testsuite-2-methylcyclohexanone.at (added) * tests/Tesselations/Makefile.am (modified) * tests/Tesselations/N_N-dimethylacetamide.test (deleted) * tests/Tesselations/N_N-dimethylacetamide/post/NonConvexEnvelope-N_N-dimethylacetamide-1.5.dat (moved) * tests/Tesselations/N_N-dimethylacetamide/post/NonConvexEnvelope-N_N-dimethylacetamide-2.5.dat (moved) * tests/Tesselations/N_N-dimethylacetamide/post/NonConvexEnvelope-N_N-dimethylacetamide-2.dat (moved) * tests/Tesselations/N_N-dimethylacetamide/post/NonConvexEnvelope-N_N-dimethylacetamide-25.dat (moved) * tests/Tesselations/N_N-dimethylacetamide/post/NonConvexEnvelope-N_N-dimethylacetamide-3.5.dat (moved) * tests/Tesselations/N_N-dimethylacetamide/post/NonConvexEnvelope-N_N-dimethylacetamide-3.dat (moved) * tests/Tesselations/N_N-dimethylacetamide/post/NonConvexEnvelope-N_N-dimethylacetamide-4.dat (moved) * tests/Tesselations/N_N-dimethylacetamide/pre/N_N-dimethylacetamide.xyz (moved) * tests/Tesselations/N_N-dimethylacetamide/testsuite-N_N-dimethylacetamide.at (added) * tests/Tesselations/atlocal.in (added) * tests/Tesselations/benzene.test (deleted) * tests/Tesselations/benzene/post/NonConvexEnvelope-benzene-1.5.dat (moved) * tests/Tesselations/benzene/post/NonConvexEnvelope-benzene-2.5.dat (moved) * tests/Tesselations/benzene/post/NonConvexEnvelope-benzene-2.dat (moved) * tests/Tesselations/benzene/post/NonConvexEnvelope-benzene-25.dat (moved) * tests/Tesselations/benzene/post/NonConvexEnvelope-benzene-3.5.dat (moved) * tests/Tesselations/benzene/post/NonConvexEnvelope-benzene-3.dat (moved) * tests/Tesselations/benzene/post/NonConvexEnvelope-benzene-4.dat (moved) * tests/Tesselations/benzene/pre/benzene.xyz (moved) * tests/Tesselations/benzene/testsuite-benzene.at (added) * tests/Tesselations/cholesterol.test (deleted) * tests/Tesselations/cholesterol/post/NonConvexEnvelope-cholesterol-1.5.dat (moved) * tests/Tesselations/cholesterol/post/NonConvexEnvelope-cholesterol-2.5.dat (moved) * tests/Tesselations/cholesterol/post/NonConvexEnvelope-cholesterol-2.dat (moved) * tests/Tesselations/cholesterol/post/NonConvexEnvelope-cholesterol-25.dat (moved) * tests/Tesselations/cholesterol/post/NonConvexEnvelope-cholesterol-3.5.dat (moved) * tests/Tesselations/cholesterol/post/NonConvexEnvelope-cholesterol-3.dat (moved) * tests/Tesselations/cholesterol/post/NonConvexEnvelope-cholesterol-4.dat (moved) * tests/Tesselations/cholesterol/pre/cholesterol.xyz (moved) * tests/Tesselations/cholesterol/testsuite-cholesterol.at (added) * tests/Tesselations/cycloheptane.test (deleted) * tests/Tesselations/cycloheptane/post/NonConvexEnvelope-cycloheptane-1.5.dat (moved) * tests/Tesselations/cycloheptane/post/NonConvexEnvelope-cycloheptane-2.5.dat (moved) * tests/Tesselations/cycloheptane/post/NonConvexEnvelope-cycloheptane-2.dat (moved) * tests/Tesselations/cycloheptane/post/NonConvexEnvelope-cycloheptane-25.dat (moved) * tests/Tesselations/cycloheptane/post/NonConvexEnvelope-cycloheptane-3.5.dat (moved) * tests/Tesselations/cycloheptane/post/NonConvexEnvelope-cycloheptane-3.dat (moved) * tests/Tesselations/cycloheptane/post/NonConvexEnvelope-cycloheptane-4.dat (moved) * tests/Tesselations/cycloheptane/pre/cycloheptane.xyz (moved) * tests/Tesselations/cycloheptane/testsuite-cycloheptane.at (added) * tests/Tesselations/defs.in (deleted) * tests/Tesselations/dimethyl_bromomalonate.test (deleted) * tests/Tesselations/dimethyl_bromomalonate/post/NonConvexEnvelope-dimethyl_bromomalonate-1.5.dat (moved) * tests/Tesselations/dimethyl_bromomalonate/post/NonConvexEnvelope-dimethyl_bromomalonate-2.5.dat (moved) * tests/Tesselations/dimethyl_bromomalonate/post/NonConvexEnvelope-dimethyl_bromomalonate-2.dat (moved) * tests/Tesselations/dimethyl_bromomalonate/post/NonConvexEnvelope-dimethyl_bromomalonate-25.dat (moved) * tests/Tesselations/dimethyl_bromomalonate/post/NonConvexEnvelope-dimethyl_bromomalonate-3.5.dat (moved) * tests/Tesselations/dimethyl_bromomalonate/post/NonConvexEnvelope-dimethyl_bromomalonate-3.dat (moved) * tests/Tesselations/dimethyl_bromomalonate/post/NonConvexEnvelope-dimethyl_bromomalonate-4.dat (moved) * tests/Tesselations/dimethyl_bromomalonate/pre/dimethyl_bromomalonate.xyz (moved) * tests/Tesselations/dimethyl_bromomalonate/testsuite-dimethyl_bromomalonate.at (added) * tests/Tesselations/glucose.test (deleted) * tests/Tesselations/glucose/post/NonConvexEnvelope-glucose-1.5.dat (moved) * tests/Tesselations/glucose/post/NonConvexEnvelope-glucose-2.5.dat (moved) * tests/Tesselations/glucose/post/NonConvexEnvelope-glucose-2.dat (moved) * tests/Tesselations/glucose/post/NonConvexEnvelope-glucose-25.dat (moved) * tests/Tesselations/glucose/post/NonConvexEnvelope-glucose-3.5.dat (moved) * tests/Tesselations/glucose/post/NonConvexEnvelope-glucose-3.dat (moved) * tests/Tesselations/glucose/post/NonConvexEnvelope-glucose-4.dat (moved) * tests/Tesselations/glucose/pre/glucose.xyz (moved) * tests/Tesselations/glucose/testsuite-glucose.at (added) * tests/Tesselations/heptan.test (deleted) * tests/Tesselations/heptan/post/NonConvexEnvelope-heptan-1.5.dat (moved) * tests/Tesselations/heptan/post/NonConvexEnvelope-heptan-2.5.dat (moved) * tests/Tesselations/heptan/post/NonConvexEnvelope-heptan-2.dat (moved) * tests/Tesselations/heptan/post/NonConvexEnvelope-heptan-25.dat (moved) * tests/Tesselations/heptan/post/NonConvexEnvelope-heptan-3.5.dat (moved) * tests/Tesselations/heptan/post/NonConvexEnvelope-heptan-3.dat (moved) * tests/Tesselations/heptan/post/NonConvexEnvelope-heptan-4.dat (moved) * tests/Tesselations/heptan/pre/heptan.xyz (moved) * tests/Tesselations/heptan/testsuite-heptan.at (added) * tests/Tesselations/isoleucine.test (deleted) * tests/Tesselations/isoleucine/post/NonConvexEnvelope-isoleucine-1.5.dat (moved) * tests/Tesselations/isoleucine/post/NonConvexEnvelope-isoleucine-2.5.dat (moved) * tests/Tesselations/isoleucine/post/NonConvexEnvelope-isoleucine-2.dat (moved) * tests/Tesselations/isoleucine/post/NonConvexEnvelope-isoleucine-25.dat (moved) * tests/Tesselations/isoleucine/post/NonConvexEnvelope-isoleucine-3.5.dat (moved) * tests/Tesselations/isoleucine/post/NonConvexEnvelope-isoleucine-3.dat (moved) * tests/Tesselations/isoleucine/post/NonConvexEnvelope-isoleucine-4.dat (moved) * tests/Tesselations/isoleucine/pre/isoleucine.xyz (moved) * tests/Tesselations/isoleucine/testsuite-isoleucine.at (added) * tests/Tesselations/molecuilder.in (added) * tests/Tesselations/neohexane.test (deleted) * tests/Tesselations/neohexane/post/NonConvexEnvelope-neohexane-1.5.dat (moved) * tests/Tesselations/neohexane/post/NonConvexEnvelope-neohexane-2.5.dat (moved) * tests/Tesselations/neohexane/post/NonConvexEnvelope-neohexane-2.dat (moved) * tests/Tesselations/neohexane/post/NonConvexEnvelope-neohexane-25.dat (moved) * tests/Tesselations/neohexane/post/NonConvexEnvelope-neohexane-3.5.dat (moved) * tests/Tesselations/neohexane/post/NonConvexEnvelope-neohexane-3.dat (moved) * tests/Tesselations/neohexane/post/NonConvexEnvelope-neohexane-4.dat (moved) * tests/Tesselations/neohexane/pre/neohexane.xyz (moved) * tests/Tesselations/neohexane/testsuite-neohexane.at (added) * tests/Tesselations/proline.test (deleted) * tests/Tesselations/proline/post/NonConvexEnvelope-proline-1.5.dat (moved) * tests/Tesselations/proline/post/NonConvexEnvelope-proline-2.5.dat (moved) * tests/Tesselations/proline/post/NonConvexEnvelope-proline-2.dat (moved) * tests/Tesselations/proline/post/NonConvexEnvelope-proline-25.dat (moved) * tests/Tesselations/proline/post/NonConvexEnvelope-proline-3.5.dat (moved) * tests/Tesselations/proline/post/NonConvexEnvelope-proline-3.dat (moved) * tests/Tesselations/proline/post/NonConvexEnvelope-proline-4.dat (moved) * tests/Tesselations/proline/pre/proline.xyz (moved) * tests/Tesselations/proline/testsuite-proline.at (added) * tests/Tesselations/putrescine.test (deleted) * tests/Tesselations/putrescine/post/NonConvexEnvelope-putrescine-1.5.dat (moved) * tests/Tesselations/putrescine/post/NonConvexEnvelope-putrescine-2.5.dat (moved) * tests/Tesselations/putrescine/post/NonConvexEnvelope-putrescine-2.dat (moved) * tests/Tesselations/putrescine/post/NonConvexEnvelope-putrescine-25.dat (moved) * tests/Tesselations/putrescine/post/NonConvexEnvelope-putrescine-3.5.dat (moved) * tests/Tesselations/putrescine/post/NonConvexEnvelope-putrescine-3.dat (moved) * tests/Tesselations/putrescine/post/NonConvexEnvelope-putrescine-4.dat (moved) * tests/Tesselations/putrescine/pre/putrescine.xyz (moved) * tests/Tesselations/putrescine/testsuite-putrescine.at (added) * tests/Tesselations/tartaric_acid.test (deleted) * tests/Tesselations/tartaric_acid/post/NonConvexEnvelope-tartaric_acid-1.5.dat (moved) * tests/Tesselations/tartaric_acid/post/NonConvexEnvelope-tartaric_acid-2.5.dat (moved) * tests/Tesselations/tartaric_acid/post/NonConvexEnvelope-tartaric_acid-2.dat (moved) * tests/Tesselations/tartaric_acid/post/NonConvexEnvelope-tartaric_acid-25.dat (moved) * tests/Tesselations/tartaric_acid/post/NonConvexEnvelope-tartaric_acid-3.5.dat (moved) * tests/Tesselations/tartaric_acid/post/NonConvexEnvelope-tartaric_acid-3.dat (moved) * tests/Tesselations/tartaric_acid/post/NonConvexEnvelope-tartaric_acid-4.dat (moved) * tests/Tesselations/tartaric_acid/pre/tartaric_acid.xyz (moved) * tests/Tesselations/tartaric_acid/testsuite-tartaric_acid.at (added) * tests/Tesselations/testsuite.at (added) Rewrote tests/Tesselations with autotest test driver. - this made ... Fri, 30 Sep 2011 08:19:37 GMT Frederik Heber [79de12] * LinearAlgebra/configure.ac (modified) * LinearAlgebra/src/unittests/Makefile.am (modified) * configure.ac (modified) * m4/ax_boost_base.m4 (deleted) * m4/ax_boost_filesystem.m4 (deleted) * m4/ax_boost_program_options.m4 (deleted) * m4/ax_boost_system.m4 (deleted) * m4/ax_codepatterns.m4 (modified) * m4/boost.m4 (added) * m4/m4_ax_boost_thread.m4 (deleted) * src/Descriptors/unittests/Makefile.am (modified) * src/Makefile.am (modified) * src/Parser/unittests/Makefile.am (modified) * src/RandomNumbers/unittests/Makefile.am (modified) * src/Shapes/unittests/Makefile.am (modified) * src/UIElements/CommandLineUI/unittests/Makefile.am (modified) * src/UIElements/Makefile.am (modified) * src/UIElements/Menu/unittests/Makefile.am (modified) * src/unittests/Makefile.am (modified) Replaced *_boost_*.m4 by boost.m4 from tsuna. - ... Fri, 30 Sep 2011 08:18:02 GMT Frederik Heber [ec188c] * LinearAlgebra/Makefile.am (modified) * LinearAlgebra/configure.ac (modified) * LinearAlgebra/doc/Doxyfile (modified) * LinearAlgebra/doc/Makefile.am (modified) * LinearAlgebra/doc/am_doxygen_include.am (added) * Makefile.am (modified) * configure.ac (modified) * doc/Doxyfile (modified) * doc/Makefile.am (modified) * doc/am_doxygen_include.am (added) * m4/ac_doxygen.m4 (modified) Fixed Doxygen usage. - using now functions from ac_doxygen.m4, ... Thu, 21 Apr 2011 16:33:54 GMT Frederik Heber [4cf35ac] * configure.ac (modified) * src/UIElements/Makefile.am (modified) DISTFIX: Missing header files in UIElements/Makefile.am. - missing: ... Thu, 21 Apr 2011 16:16:19 GMT Frederik Heber [dc322a] * LinearAlgebra/configure.ac (modified) * configure.ac (modified) DISTFIX: need to use tar-pax to allow for longer filenames in dist's ... Mon, 18 Apr 2011 15:00:06 GMT Frederik Heber [b404da] * configure.ac (modified) Set version to 1.1.2. - library is now 4:0:0 due to "removal" of ... Mon, 18 Apr 2011 12:45:06 GMT Frederik Heber [455573] * configure.ac (modified) * src/Actions/Makefile.am (modified) * src/Actions/unittests/ActionRegistryUnitTest.cpp (modified) * src/Actions/unittests/Makefile.am (modified) * src/Descriptors/unittests/Makefile.am (modified) * src/Graph/Makefile.am (modified) * src/Makefile.am (modified) * src/Parser/Makefile.am (modified) * src/Parser/unittests/Makefile.am (modified) * src/RandomNumbers/Makefile.am (modified) * src/RandomNumbers/unittests/Makefile.am (modified) * src/Shapes/Makefile.am (modified) * src/Shapes/unittests/Makefile.am (modified) * src/UIElements/CommandLineUI/unittests/Makefile.am (modified) * src/UIElements/Makefile.am (modified) * src/UIElements/Menu/unittests/Makefile.am (modified) * src/unittests/Makefile.am (modified) Large Commit: SUBDIRS in src/Makefile.am replaced by include. - ... Fri, 08 Apr 2011 15:48:50 GMT Frederik Heber [bf4b9f] * LinearAlgebra/.gitignore (added) * LinearAlgebra/AUTHORS (added) * LinearAlgebra/COPYING (added) * LinearAlgebra/ChangeLog (added) * LinearAlgebra/INSTALL (added) * LinearAlgebra/LinearAlgebra-debug.pc.in (added) * LinearAlgebra/LinearAlgebra.pc.in (moved) * LinearAlgebra/Makefile.am (added) * LinearAlgebra/NEWS (added) * LinearAlgebra/README (added) * LinearAlgebra/bootstrap (added) * LinearAlgebra/build-aux/README (added) * LinearAlgebra/configure.ac (added) * LinearAlgebra/doc/Doxyfile (added) * LinearAlgebra/doc/Makefile.am (added) * LinearAlgebra/libLinearAlgebra_config.h.in (added) * LinearAlgebra/m4 (added) * LinearAlgebra/src/LinearAlgebra/BoxVector.cpp (moved) * LinearAlgebra/src/LinearAlgebra/BoxVector.hpp (moved) * LinearAlgebra/src/LinearAlgebra/Exceptions.hpp (moved) * LinearAlgebra/src/LinearAlgebra/Line.cpp (moved) * LinearAlgebra/src/LinearAlgebra/Line.hpp (moved) * LinearAlgebra/src/LinearAlgebra/LineSegment.cpp (moved) * LinearAlgebra/src/LinearAlgebra/LineSegment.hpp (moved) * LinearAlgebra/src/LinearAlgebra/LineSegmentSet.cpp (moved) * LinearAlgebra/src/LinearAlgebra/LineSegmentSet.hpp (moved) * LinearAlgebra/src/LinearAlgebra/LinearSystemOfEquations.cpp (moved) * LinearAlgebra/src/LinearAlgebra/LinearSystemOfEquations.hpp (moved) * LinearAlgebra/src/LinearAlgebra/Makefile.am (moved) * LinearAlgebra/src/LinearAlgebra/MatrixContent.cpp (moved) * LinearAlgebra/src/LinearAlgebra/MatrixContent.hpp (moved) * LinearAlgebra/src/LinearAlgebra/MatrixVector_ops.cpp (moved) * LinearAlgebra/src/LinearAlgebra/MatrixVector_ops.hpp (moved) * LinearAlgebra/src/LinearAlgebra/Plane.cpp (moved) * LinearAlgebra/src/LinearAlgebra/Plane.hpp (moved) * LinearAlgebra/src/LinearAlgebra/RealSpaceMatrix.cpp (moved) * LinearAlgebra/src/LinearAlgebra/RealSpaceMatrix.hpp (moved) * LinearAlgebra/src/LinearAlgebra/Space.cpp (moved) * LinearAlgebra/src/LinearAlgebra/Space.hpp (moved) * LinearAlgebra/src/LinearAlgebra/Vector.cpp (moved) * LinearAlgebra/src/LinearAlgebra/Vector.hpp (moved) * LinearAlgebra/src/LinearAlgebra/VectorContent.cpp (moved) * LinearAlgebra/src/LinearAlgebra/VectorContent.hpp (moved) * LinearAlgebra/src/LinearAlgebra/VectorInterface.cpp (moved) * LinearAlgebra/src/LinearAlgebra/VectorInterface.hpp (moved) * LinearAlgebra/src/LinearAlgebra/VectorSet.hpp (moved) * LinearAlgebra/src/LinearAlgebra/defs.hpp (moved) * LinearAlgebra/src/LinearAlgebra/fast_functions.hpp (moved) * LinearAlgebra/src/LinearAlgebra/leastsquaremin.cpp (moved) * LinearAlgebra/src/LinearAlgebra/leastsquaremin.hpp (moved) * LinearAlgebra/src/LinearAlgebra/vector_ops.cpp (moved) * LinearAlgebra/src/LinearAlgebra/vector_ops.hpp (moved) * LinearAlgebra/src/unittests/LineUnitTest.cpp (moved) * LinearAlgebra/src/unittests/LineUnitTest.hpp (moved) * LinearAlgebra/src/unittests/LinearSystemOfEquationsUnitTest.cpp (moved) * LinearAlgebra/src/unittests/LinearSystemOfEquationsUnitTest.hpp (moved) * LinearAlgebra/src/unittests/Makefile.am (moved) * LinearAlgebra/src/unittests/MatrixContentSymmetricUnitTest.cpp (moved) * LinearAlgebra/src/unittests/MatrixContentSymmetricUnitTest.hpp (moved) * LinearAlgebra/src/unittests/MatrixContentUnitTest.cpp (moved) * LinearAlgebra/src/unittests/MatrixContentUnitTest.hpp (moved) * LinearAlgebra/src/unittests/MatrixUnitTest.cpp (moved) * LinearAlgebra/src/unittests/MatrixUnitTest.hpp (moved) * LinearAlgebra/src/unittests/PlaneUnitTest.cpp (moved) * LinearAlgebra/src/unittests/PlaneUnitTest.hpp (moved) * LinearAlgebra/src/unittests/TestRunnerMain.cpp (added) * LinearAlgebra/src/unittests/UnitTestMain.cpp (added) * LinearAlgebra/src/unittests/VectorContentUnitTest.cpp (moved) * LinearAlgebra/src/unittests/VectorContentUnitTest.hpp (moved) * LinearAlgebra/src/unittests/VectorUnitTest.cpp (moved) * LinearAlgebra/src/unittests/VectorUnitTest.hpp (moved) * LinearAlgebra/tests/CodeChecks/Makefile.am (added) * LinearAlgebra/tests/CodeChecks/atlocal.in (added) * LinearAlgebra/tests/CodeChecks/testsuite-config_h.at (added) * LinearAlgebra/tests/CodeChecks/testsuite-memdebug.at (added) * LinearAlgebra/tests/CodeChecks/testsuite.at (added) * Makefile.am (modified) * bootstrap (modified) * build-aux/README (added) * config/depcomp (deleted) * config/install-sh (deleted) * config/ltmain.sh (deleted) * config/missing (deleted) * configure.ac (modified) * src/Actions/Makefile.am (modified) * src/Actions/unittests/Makefile.am (modified) * src/Descriptors/unittests/Makefile.am (modified) * src/Graph/Makefile.am (modified) * src/Makefile.am (modified) * src/Parser/Makefile.am (modified) * src/Parser/unittests/Makefile.am (modified) * src/Shapes/Makefile.am (modified) * src/Shapes/unittests/Makefile.am (modified) * src/UIElements/CommandLineUI/unittests/Makefile.am (modified) * src/UIElements/Makefile.am (modified) * src/UIElements/Menu/unittests/Makefile.am (modified) * src/unittests/Makefile.am (modified) Moved LinearAlgebra from folder src/ into distinct sub-package. - ... Wed, 06 Apr 2011 13:50:42 GMT Frederik Heber [3e2225f] * configure.ac (modified) * src/Actions/unittests/Makefile.am (modified) * src/Descriptors/unittests/Makefile.am (modified) * src/Exceptions/CustomException.cpp (deleted) * src/Exceptions/CustomException.hpp (deleted) * src/Exceptions/Makefile.am (deleted) * src/Makefile.am (modified) * src/Parser/unittests/Makefile.am (modified) * src/Shapes/Makefile.am (modified) * src/Shapes/unittests/Makefile.am (modified) * src/UIElements/CommandLineUI/unittests/Makefile.am (modified) * src/UIElements/Menu/unittests/Makefile.am (modified) * src/unittests/Makefile.am (modified) Removed subdir Exceptions and libMolecuilderExceptions. - changes ... Wed, 06 Apr 2011 13:50:41 GMT Frederik Heber [255829] * configure.ac (modified) * src/BoundaryPolygonSet.cpp (modified) * src/ConfigFileBuffer.cpp (modified) * src/Dynamics/MinimiseConstrainedPotential.cpp (modified) * src/Dynamics/OutputTemperature.hpp (modified) * src/Dynamics/VerletForceIntegration.hpp (modified) * src/Formula.hpp (modified) * src/Graph/CheckAgainstAdjacencyFile.cpp (modified) * src/Helpers/Makefile.am (deleted) * src/Helpers/defs.hpp (modified) * src/Helpers/helpers.cpp (deleted) * src/Helpers/helpers.hpp (modified) * src/Makefile.am (modified) * src/Parser/unittests/ParserPcpUnitTest.cpp (modified) * src/Parser/unittests/ParserPdbUnitTest.cpp (modified) * src/Parser/unittests/ParserXyzUnitTest.cpp (modified) * src/Shapes/unittests/Makefile.am (modified) * src/Thermostats/Berendsen.cpp (modified) * src/Thermostats/GaussianThermostat.cpp (modified) * src/Thermostats/Langevin.cpp (modified) * src/Thermostats/NoseHoover.cpp (modified) * src/Thermostats/Woodcock.cpp (modified) * src/UIElements/Views/Qt4/QtStatusBar.cpp (modified) * src/analysis_correlation.hpp (modified) * src/analyzer.cpp (modified) * src/atom.hpp (modified) * src/boundary.cpp (modified) * src/config.cpp (modified) * src/datacreator.cpp (modified) * src/joiner.cpp (modified) * src/linkedcell.cpp (modified) * src/molecule.cpp (modified) * src/molecule.hpp (modified) * src/molecule_geometry.cpp (modified) * src/molecule_graph.cpp (modified) * src/parser.cpp (modified) * src/periodentafel.cpp (modified) * src/tesselation.hpp (modified) * src/triangleintersectionlist.cpp (modified) * src/unittests/ListOfBondsUnitTest.cpp (modified) * src/unittests/Makefile.am (modified) * src/unittests/TesselationUnitTest.cpp (modified) * src/unittests/Tesselation_BoundaryTriangleUnitTest.cpp (modified) * src/unittests/Tesselation_InsideOutsideUnitTest.cpp (modified) Removed Helpers.hpp, deleted Helpers.cpp and libMoleCuilderHelpers.la ... Wed, 06 Apr 2011 13:50:30 GMT Frederik Heber [06aedc] * LinearAlgebra-debug.pc.in (added) * LinearAlgebra.pc.in (added) * configure.ac (modified) * src/Actions/Values.hpp (modified) * src/BoundaryTriangleSet.cpp (modified) * src/Box.cpp (modified) * src/Helpers/Makefile.am (modified) * src/Helpers/defs.hpp (modified) * src/Helpers/helpers.cpp (modified) * src/LinearAlgebra/BoxVector.cpp (modified) * src/LinearAlgebra/LinearSystemOfEquations.cpp (modified) * src/LinearAlgebra/Makefile.am (modified) * src/LinearAlgebra/MatrixContent.cpp (modified) * src/LinearAlgebra/RealSpaceMatrix.cpp (modified) * src/LinearAlgebra/RealSpaceMatrix.hpp (modified) * src/LinearAlgebra/Vector.cpp (modified) * src/LinearAlgebra/Vector.hpp (modified) * src/LinearAlgebra/defs.hpp (modified) * src/LinearAlgebra/fast_functions.hpp (moved) * src/LinearAlgebra/leastsquaremin.cpp (modified) * src/LinearAlgebra/unittests/MatrixUnitTest.cpp (modified) * src/LinearAlgebra/vector_ops.cpp (modified) * src/Shapes/unittests/ShapeUnitTest.cpp (modified) * src/boundary.hpp (modified) * src/datacreator.cpp (modified) * src/element.hpp (modified) * src/molecule_graph.cpp (modified) * src/moleculelist.cpp (modified) * src/tesselation.cpp (modified) libMolecuilderLinearAlgebra is now a self-contained library fit for ... Sat, 02 Apr 2011 00:58:32 GMT Frederik Heber [a9b20c0] * configure.ac (modified) Set current version to 1.1.1. - library is now 3:0:0. Mon, 07 Mar 2011 11:40:27 GMT Frederik Heber [dda246] * configure.ac (modified) * src/Helpers/Makefile.am (added) * src/LinearAlgebra/Makefile.am (modified) * src/LinearAlgebra/unittests/Makefile.am (modified) * src/Makefile.am (modified) * src/Shapes/unittests/Makefile.am (modified) * src/unittests/Makefile.am (modified) Made Helpers into commodity library to prevent double inclusion. - ... Mon, 07 Mar 2011 11:40:27 GMT Frederik Heber [19290f] * configure.ac (modified) * src/UIElements/CommandLineUI/CommandLineParser.hpp (modified) * src/UIElements/CommandLineUI/unittests/CommandLineParser_ActionRegistry_ConsistenyUnitTest.cpp (added) * src/UIElements/CommandLineUI/unittests/CommandLineParser_ActionRegistry_ConsistenyUnitTest.hpp (added) * src/UIElements/CommandLineUI/unittests/Makefile.am (added) * src/unittests/Makefile.am (modified) Added CommandLineParser_ActionRegistry_ConsistenyUnitTest to check ... Wed, 02 Mar 2011 21:53:07 GMT Frederik Heber [53d6b2] * configure.ac (modified) * src/Graph/BreadthFirstSearchAdd.cpp (added) * src/Graph/BreadthFirstSearchAdd.hpp (added) * src/Graph/Makefile.am (added) * src/Makefile.am (modified) * src/molecule.hpp (modified) * src/molecule_graph.cpp (modified) Moved unused function BreadthFirstSearchAdd and subfunctions into ... Tue, 01 Mar 2011 13:17:08 GMT Frederik Heber [300220] * configure.ac (modified) * src/Actions/FragmentationAction/CreateAdjacencyAction.cpp (modified) * src/bondgraph.cpp (modified) * src/bondgraph.hpp (modified) * src/molecule.cpp (modified) * src/molecule_fragmentation.cpp (modified) * src/molecule_geometry.cpp (modified) BondGraph::..MinMaxDistance() changed to use range. - ... Tue, 01 Mar 2011 10:16:38 GMT Frederik Heber [34c43a] * configure.ac (modified) * src/Actions/AnalysisAction/MolecularVolumeAction.cpp (modified) * src/Actions/AnalysisAction/SurfaceCorrelationAction.cpp (modified) * src/Actions/FragmentationAction/ConstructBondGraphAction.cpp (modified) * src/Actions/TesselationAction/ConvexEnvelopeAction.cpp (modified) * src/Actions/TesselationAction/NonConvexEnvelopeAction.cpp (modified) * src/IPointCloud.hpp (added) * src/Makefile.am (modified) * src/PointCloud.cpp (deleted) * src/PointCloud.hpp (deleted) * src/PointCloudAdaptor.hpp (added) * src/boundary.cpp (modified) * src/boundary.hpp (modified) * src/ellipsoid.cpp (modified) * src/linkedcell.cpp (modified) * src/linkedcell.hpp (modified) * src/molecule.cpp (modified) * src/molecule.hpp (modified) * src/molecule_graph.cpp (modified) * src/molecule_pointcloud.cpp (modified) * src/tesselation.cpp (modified) * src/tesselation.hpp (modified) * src/tesselationhelpers.cpp (modified) * src/tesselationhelpers.hpp (modified) * src/unittests/AnalysisCorrelationToSurfaceUnitTest.cpp (modified) * src/unittests/LinkedCellUnitTest.cpp (modified) * src/unittests/TesselationUnitTest.cpp (modified) * src/unittests/TesselationUnitTest.hpp (modified) * src/unittests/Tesselation_BoundaryTriangleUnitTest.hpp (modified) * src/unittests/Tesselation_InsideOutsideUnitTest.cpp (modified) * src/unittests/Tesselation_InsideOutsideUnitTest.hpp (modified) * tests/regression/Tesselation/BigConvex/testsuite-tesselation-big-convex-envelope.at (modified) * tests/regression/Tesselation/BigNonConvex/testsuite-tesselation-big-non-convex-envelope.at (modified) * tests/regression/Tesselation/Convex/testsuite-tesselation-convex-envelope.at (modified) * tests/regression/Tesselation/NonConvex/testsuite-tesselation-non-convex-envelope.at (modified) Bigger change: Replaced PointCloud by PointCloudAdaptor. - ... Fri, 11 Feb 2011 20:55:44 GMT Frederik Heber [170ba6] * configure.ac (modified) * src/Descriptors/MoleculeOrderDescriptor.cpp (modified) * tests/regression/Makefile.am (modified) * tests/regression/Selection/Atoms/testsuite-selection-atoms.at (added) * tests/regression/Selection/Molecules/MoleculeByOrder/post/empty.xyz (added) * tests/regression/Selection/Molecules/MoleculeByOrder/post/twowater.xyz (added) * tests/regression/Selection/Molecules/MoleculeByOrder/post/water_id0.xyz (added) * tests/regression/Selection/Molecules/MoleculeByOrder/post/water_id1.xyz (added) * tests/regression/Selection/Molecules/MoleculeByOrder/pre/twowater.xyz (added) * tests/regression/Selection/Molecules/MoleculeByOrder/testsuite-selection-molecule-by-order.at (added) * tests/regression/Selection/Molecules/testsuite-selection-molecules.at (added) * tests/regression/Selection/testsuite-selection.at (modified) BUGFIX: MoleculeOrderDescription was not working in reverse because ... Thu, 10 Feb 2011 19:09:31 GMT Frederik Heber [844b2e] * configure.ac (modified) We now require CodePatterns v1.0.8 for LOG() shorthand to logger and ... Fri, 04 Feb 2011 18:56:38 GMT Frederik Heber [038713] * configure.ac (modified) * tests/Fragmentations/1_2-dimethoxyethane.test (added) * tests/Fragmentations/1_2-dimethoxyethane/1_2-dimethoxyethane.xyz (added) * tests/Fragmentations/1_2-dimethylbenzene.test (added) * tests/Fragmentations/1_2-dimethylbenzene/1_2-dimethylbenzene.xyz (added) * tests/Fragmentations/2-methylcyclohexanone.test (added) * tests/Fragmentations/2-methylcyclohexanone/2-methylcyclohexanone.xyz (added) * tests/Fragmentations/Makefile.am (added) * tests/Fragmentations/N_N-dimethylacetamide.test (added) * tests/Fragmentations/N_N-dimethylacetamide/N_N-dimethylacetamide.xyz (added) * tests/Fragmentations/benzene.test (added) * tests/Fragmentations/benzene/benzene.xyz (added) * tests/Fragmentations/cholesterol.test (added) * tests/Fragmentations/cholesterol/cholesterol.xyz (added) * tests/Fragmentations/cycloheptane.test (added) * tests/Fragmentations/cycloheptane/cycloheptane.xyz (added) * tests/Fragmentations/defs.in (added) * tests/Fragmentations/dimethyl_bromomalonate.test (added) * tests/Fragmentations/dimethyl_bromomalonate/dimethyl_bromomalonate.xyz (added) * tests/Fragmentations/glucose.test (added) * tests/Fragmentations/glucose/glucose.xyz (added) * tests/Fragmentations/heptan.test (added) * tests/Fragmentations/heptan/heptan.xyz (added) * tests/Fragmentations/isoleucine.test (added) * tests/Fragmentations/isoleucine/isoleucine.xyz (added) * tests/Fragmentations/neohexane.test (added) * tests/Fragmentations/neohexane/neohexane.xyz (added) * tests/Fragmentations/proline.test (added) * tests/Fragmentations/proline/proline.xyz (added) * tests/Fragmentations/putrescine.test (added) * tests/Fragmentations/putrescine/putrescine.xyz (added) * tests/Fragmentations/tartaric_acid.test (added) * tests/Fragmentations/tartaric_acid/tartaric_acid.xyz (added) * tests/Makefile.am (modified) Added Fragmentations test in the spirit of the Tesselations test. - ... Thu, 03 Feb 2011 09:59:57 GMT Frederik Heber [0275ad] * configure.ac (modified) * src/Actions/RandomNumbersAction/SetRandomNumbersDistributionAction.cpp (modified) * src/Actions/RandomNumbersAction/SetRandomNumbersDistributionAction.def (modified) * src/Actions/RandomNumbersAction/SetRandomNumbersEngineAction.cpp (modified) * src/Actions/RandomNumbersAction/SetRandomNumbersEngineAction.def (modified) * src/Actions/ValueStorage.cpp (modified) * src/Actions/ValueStorage.hpp (modified) * src/RandomNumbers/Makefile.am (modified) * src/RandomNumbers/RandomNumberDistribution.hpp (modified) * src/RandomNumbers/RandomNumberDistributionFactory.cpp (modified) * src/RandomNumbers/RandomNumberDistributionFactory.def (modified) * src/RandomNumbers/RandomNumberDistributionFactory.hpp (modified) * src/RandomNumbers/RandomNumberDistributionFactory.undef (modified) * src/RandomNumbers/RandomNumberDistribution_Encapsulation.cpp (modified) * src/RandomNumbers/RandomNumberDistribution_Encapsulation.hpp (modified) * src/RandomNumbers/RandomNumberDistribution_Parameters.cpp (added) * src/RandomNumbers/RandomNumberDistribution_Parameters.hpp (added) * src/RandomNumbers/RandomNumberEngine.hpp (modified) * src/RandomNumbers/RandomNumberEngineFactory.cpp (modified) * src/RandomNumbers/RandomNumberEngineFactory.def (modified) * src/RandomNumbers/RandomNumberEngineFactory.hpp (modified) * src/RandomNumbers/RandomNumberEngineFactory.undef (modified) * src/RandomNumbers/RandomNumberEngine_Encapsulation.hpp (modified) * src/RandomNumbers/RandomNumberEngine_Parameters.cpp (added) * src/RandomNumbers/RandomNumberEngine_Parameters.hpp (added) * src/RandomNumbers/RandomNumberGeneratorFactory.def (modified) * src/RandomNumbers/unittests/RandomNumberDistributionFactoryUnitTest.cpp (modified) * src/RandomNumbers/unittests/RandomNumberDistributionFactoryUnitTest.hpp (modified) * src/RandomNumbers/unittests/RandomNumberEngineFactoryUnitTest.cpp (modified) * src/RandomNumbers/unittests/RandomNumberEngineFactoryUnitTest.hpp (modified) * src/UIElements/CommandLineUI/CommandLineDialog.cpp (modified) * src/UIElements/CommandLineUI/CommandLineDialog.hpp (modified) * src/UIElements/CommandLineUI/CommandLineParser.cpp (modified) * src/UIElements/CommandLineUI/Query/CommandLineQuery.hpp (modified) * src/UIElements/CommandLineUI/Query/RandomNumberDistribution_ParametersCommandLineQuery.cpp (added) * src/UIElements/CommandLineUI/TypeEnumContainer.cpp (modified) * src/UIElements/CommandLineUI/TypeEnumContainer.hpp (modified) * src/UIElements/Dialog.cpp (modified) * src/UIElements/Dialog.hpp (modified) * src/UIElements/Makefile.am (modified) * src/UIElements/Qt4/Pipe/RandomNumberDistribution_ParametersQtQueryPipe.cpp (added) * src/UIElements/Qt4/Pipe/RandomNumberDistribution_ParametersQtQueryPipe.hpp (added) * src/UIElements/Qt4/QtDialog.cpp (modified) * src/UIElements/Qt4/QtDialog.hpp (modified) * src/UIElements/Qt4/Query/QtQuery.hpp (modified) * src/UIElements/Qt4/Query/RandomNumberDistribution_ParametersQtQuery.cpp (added) * src/UIElements/Query/RandomNumberDistribution_ParametersQuery.cpp (added) * src/UIElements/TextUI/Query/RandomNumberDistribution_ParametersTextQuery.cpp (added) * src/UIElements/TextUI/Query/TextQuery.hpp (modified) * src/UIElements/TextUI/TextDialog.cpp (modified) * src/UIElements/TextUI/TextDialog.hpp (modified) * src/unittests/DummyUI.hpp (modified) * tests/regression/RandomNumbers/Distribution/testsuite-set-random-number-distribution.at (modified) * tests/regression/RandomNumbers/Engine/testsuite-set-random-number-engine.at (modified) Final step in Random numbers is done ... - requires CodePatterns ... Thu, 03 Feb 2011 09:59:28 GMT Frederik Heber [1ee3b8d] * configure.ac (modified) * src/Actions/unittests/Makefile.am (modified) * src/Descriptors/unittests/Makefile.am (modified) * src/LinearAlgebra/Makefile.am (modified) * src/Makefile.am (modified) * src/Parser/unittests/Makefile.am (modified) * src/RandomNumbers/Makefile.am (added) * src/RandomNumbers/unittests/Makefile.am (modified) * src/unittests/Makefile.am (modified) Made RandomNumbers sources into its own library ... Thu, 03 Feb 2011 09:51:19 GMT Frederik Heber [6ff0c8] * configure.ac (modified) * src/Actions/RandomNumbersAction/SetRandomNumbersEngineAction.cpp (modified) * src/Actions/RandomNumbersAction/SetRandomNumbersEngineAction.def (modified) * src/RandomNumbers/RandomNumberEngine.hpp (modified) * src/RandomNumbers/RandomNumberEngineFactory.hpp (modified) * src/RandomNumbers/RandomNumberEngineFactory.undef (modified) SetRandomNumbersEngineAction now only requires ... Thu, 03 Feb 2011 09:51:19 GMT Frederik Heber [9b3476] * configure.ac (modified) * src/RandomNumbers/RandomNumberDistributionFactory.cpp (modified) * src/RandomNumbers/RandomNumberDistributionFactory.def (modified) * src/RandomNumbers/RandomNumberDistributionFactory.hpp (modified) * src/RandomNumbers/RandomNumberDistributionFactory.undef (modified) * src/RandomNumbers/RandomNumberDistribution_Encapsulation.hpp (modified) * src/RandomNumbers/RandomNumberEngine.hpp (modified) * src/RandomNumbers/RandomNumberEngineFactory.cpp (modified) * src/RandomNumbers/RandomNumberEngineFactory.def (modified) * src/RandomNumbers/RandomNumberEngineFactory.hpp (modified) * src/RandomNumbers/RandomNumberEngineFactory.undef (modified) * src/RandomNumbers/RandomNumberEngine_Encapsulation.hpp (modified) * src/RandomNumbers/RandomNumberGeneratorFactory.hpp (modified) * src/RandomNumbers/unittests/RandomNumberDistributionFactoryUnitTest.cpp (modified) * src/RandomNumbers/unittests/RandomNumberDistributionFactoryUnitTest.hpp (modified) * src/RandomNumbers/unittests/RandomNumberEngineFactoryUnitTest.cpp (modified) * src/RandomNumbers/unittests/RandomNumberEngineFactoryUnitTest.hpp (modified) RandomNumberDistribution and RandomNumberEngine inherit Clone instead ... Thu, 03 Feb 2011 09:51:19 GMT Frederik Heber [076a77] * configure.ac (modified) * src/RandomNumbers/RandomNumberDistribution_Encapsulation.hpp (modified) * src/RandomNumbers/RandomNumberEngine_Encapsulation.hpp (modified) * src/RandomNumbers/RandomNumberGeneratorFactory.cpp (modified) * src/RandomNumbers/RandomNumberGeneratorFactory.hpp (modified) * src/RandomNumbers/RandomNumberGenerator_Encapsulation.hpp (modified) * src/RandomNumbers/unittests/RandomNumberGeneratorFactoryUnitTest.cpp (modified) * src/RandomNumbers/unittests/RandomNumberGeneratorFactoryUnitTest.hpp (modified) RandomNumberGeneratorFactory nows uses Clone instead of Creator ... Thu, 03 Feb 2011 09:51:19 GMT Frederik Heber [1d5a871] * configure.ac (modified) * src/Makefile.am (modified) * src/RandomNumbers/Creator_impl.hpp (deleted) * src/RandomNumbers/RandomNumberDistributionFactory.cpp (modified) * src/RandomNumbers/RandomNumberDistributionFactory.def (modified) * src/RandomNumbers/RandomNumberDistributionFactory.hpp (modified) * src/RandomNumbers/RandomNumberDistributionFactory.undef (modified) * src/RandomNumbers/RandomNumberDistribution_Creator.hpp (deleted) * src/RandomNumbers/RandomNumberDistribution_Encapsulation.hpp (modified) * src/RandomNumbers/RandomNumberEngineFactory.cpp (modified) * src/RandomNumbers/RandomNumberEngineFactory.def (modified) * src/RandomNumbers/RandomNumberEngineFactory.hpp (modified) * src/RandomNumbers/RandomNumberEngineFactory.undef (modified) * src/RandomNumbers/RandomNumberEngine_Creator.hpp (deleted) * src/RandomNumbers/RandomNumberEngine_Encapsulation.hpp (modified) * src/RandomNumbers/RandomNumberGeneratorFactory.cpp (modified) * src/RandomNumbers/RandomNumberGeneratorFactory.def (added) * src/RandomNumbers/RandomNumberGeneratorFactory.hpp (modified) * src/RandomNumbers/RandomNumberGeneratorFactory.undef (added) * src/RandomNumbers/RandomNumberGenerator_Creator.hpp (deleted) * src/RandomNumbers/RandomNumberGenerator_Encapsulation.hpp (modified) * src/RandomNumbers/TemplatePowerSetGenerator.hpp (modified) * src/RandomNumbers/unittests/RandomNumberDistributionFactoryUnitTest.cpp (modified) * src/RandomNumbers/unittests/RandomNumberEngineFactoryUnitTest.cpp (modified) * src/builder_init.cpp (modified) Factored out Factory pattern (no pun intended). - the Factory ...