#
# ChangeLog for /
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# Generated by Trac 1.6
# Jun 6, 2025, 2:04:54 PM

Sun, 30 May 2010 10:57:01 GMT Frederik Heber <heber@…> [403637]
	* tests/regression/testsuite.at (modified)

	Added case '-g' (load bond table) to testsuite.


Sun, 30 May 2010 10:53:16 GMT Frederik Heber <heber@…> [ff73a2]
	* src/periodentafel.cpp (modified)
	* tests/regression/testsuite.at (modified)

	Refined check for case '-e' of testsuite and some found bugfixes of ...


Sun, 30 May 2010 10:00:41 GMT Frederik Heber <heber@…> [2f0c42]
	* tests/regression/testsuite.at (modified)

	Added test for parsing specified element database to testsuite.


Sun, 30 May 2010 09:54:26 GMT Frederik Heber <heber@…> [a97f55]
	* tests/regression/testsuite.at (modified)

	Extended standard options part of testsuite to include further tests.


Sun, 30 May 2010 09:49:37 GMT Frederik Heber <heber@…> [745874]
	* tests/regression/Domain/4/post/test.conf (added)
	* tests/regression/Domain/4/pre/test.conf (added)
	* tests/regression/testsuite.at (modified)

	Added case '-O' to testsuite.


Sun, 30 May 2010 09:46:13 GMT Frederik Heber <heber@…> [8df4e3]
	* Makefile.am (modified)

	Removed src/Actions from subdirs as this is handled in ...


Sun, 30 May 2010 09:45:41 GMT Frederik Heber <heber@…> [0335a2]
	* tests/regression/Domain/3/post/test.conf (added)
	* tests/regression/Domain/3/pre/test.conf (added)
	* tests/regression/testsuite.at (modified)

	Added case '-c' to testsuite.


Sun, 30 May 2010 09:21:01 GMT Frederik Heber <heber@…> [318cea]
	* tests/Tesselations/defs.in (modified)

	FIX: Tesselations test failed on first.

	- defs.in would go into ...


Sun, 30 May 2010 09:18:14 GMT Frederik Heber <heber@…> [b2b47f]
	* configure.ac (modified)
	* tests/Makefile.am (modified)
	* tests/regression/Makefile.am (added)
	* tests/regression/atlocal.in (moved)
	* tests/regression/molecuilder.in (moved)
	* tests/regression/testsuite.at (moved)

	Shifted regression testsuite into folder regression.

	This is to ...


Sat, 29 May 2010 18:57:36 GMT Frederik Heber <heber@…> [e3989a]
	* tests/regression/Domain/2/post/test.conf (added)
	* tests/regression/Domain/2/pre/test.conf (added)
	* tests/testsuite.at (modified)

	Added case '-b' to testsuite.


Sat, 29 May 2010 18:29:33 GMT Frederik Heber <heber@…> [c82720]
	* tests/regression/Domain/1/post/test.conf (added)
	* tests/testsuite.at (modified)

	Added case '-B' to testsuite.

	- added new set of tests 'Domain'


Sat, 29 May 2010 15:13:36 GMT Frederik Heber <heber@…> [d8c0ed]
	* tests/regression/Tesselation/1/post/NonConvexEnvelope.r3d (modified)
	* tests/regression/Tesselation/2/post/ConvexEnvelope.r3d (modified)
	* tests/regression/Tesselation/2/post/NonConvexEnvelope.r3d (modified)
	* tests/regression/Tesselation/3/post/NonConvexEnvelope.r3d (modified)

	Merge branch 'FixTestsuiteDetermineCenterOfAllBug' into ...


Sat, 29 May 2010 15:12:43 GMT Frederik Heber <heber@…> [f37746]
	* tests/regression/Tesselation/1/post/NonConvexEnvelope.r3d (modified)
	* tests/regression/Tesselation/2/post/ConvexEnvelope.r3d (modified)
	* tests/regression/Tesselation/2/post/NonConvexEnvelope.r3d (modified)
	* tests/regression/Tesselation/3/post/NonConvexEnvelope.r3d (modified)

	FIX: As molecule::DetermineCenterOfAll() was broken, centers used in ...


Sat, 29 May 2010 14:18:41 GMT Frederik Heber <heber@…> [62680e]
	* src/builder.cpp (modified)

	Merge branch 'FixReintroduceExitFlagtoParseCommandLineCall' into ...


Sat, 29 May 2010 14:15:27 GMT Frederik Heber <heber@…> [99fcaf]
	* src/builder.cpp (modified)

	FIX: Flag returned by ParseCommandLineOptions() needs to be heeded, ...


Sat, 29 May 2010 14:00:12 GMT Frederik Heber <heber@…> [9757d9]
	* tests/testsuite.at (modified)

	Merge branch 'FixTestsuiteCode134onElementsDB' into ...


Sat, 29 May 2010 14:00:08 GMT Frederik Heber <heber@…> [b13ea4]
	* src/Actions/MapOfActions.cpp (modified)
	* tests/testsuite.at (modified)

	Merge branch 'FixtestsuiteforVerboseChanges' into ...


Sat, 29 May 2010 13:52:51 GMT Frederik Heber <heber@…> [6670a97]
	* src/Actions/MapOfActions.cpp (modified)
	* tests/testsuite.at (modified)

	Change to testsuite as verbosity is now defined as (-v 3) not as ...


Sat, 29 May 2010 13:24:29 GMT Frederik Heber <heber@…> [60f50a]
	* tests/testsuite.at (modified)

	TESTFIX: Testuite expected return code 134 instead of 255 for wrong ...


Sat, 29 May 2010 13:11:22 GMT Frederik Heber <heber@…> [0fb9f6]
	* src/UIElements/CommandLineUI/CommandLineWindow.cpp (modified)
	* src/builder.cpp (modified)
	* src/helpers.cpp (modified)

	Fixes to prevent seg'faults.

	- ...


Wed, 19 May 2010 18:46:52 GMT Frederik Heber <heber@…> [8de375]
	* src/Helpers/MemDebug.cpp (modified)
	* src/analysis_bonds.cpp (modified)
	* src/atom.cpp (modified)
	* src/atom_bondedparticle.cpp (modified)
	* src/atom_graphnode.cpp (modified)
	* src/atom_particleinfo.cpp (modified)
	* src/atom_particleinfo.hpp (modified)
	* src/bond.cpp (modified)
	* src/builder.cpp (modified)
	* src/config.cpp (modified)
	* src/molecule.cpp (modified)
	* src/molecule_fragmentation.cpp (modified)
	* src/molecule_geometry.cpp (modified)
	* src/molecule_graph.cpp (modified)
	* src/moleculelist.cpp (modified)
	* src/parser.cpp (modified)
	* src/tesselation.cpp (modified)
	* src/tesselationhelpers.cpp (modified)
	* src/unittests/LinkedCellUnitTest.cpp (modified)
	* src/unittests/tesselation_boundarytriangleunittest.cpp (modified)
	* src/unittests/tesselation_insideoutsideunittest.cpp (modified)
	* src/unittests/tesselationunittest.cpp (modified)

	Merge branch 'StructureRefactoring' into CommandLineActionMapping
 ...


Wed, 19 May 2010 18:41:05 GMT Frederik Heber <heber@…> [eff648]
	* src/builder.cpp (modified)

	BUGFIX: In ParseCommandLineOptions() -v and -V were mixed.

	- ...


Wed, 19 May 2010 14:03:42 GMT Tillmann Crueger <crueger@…> [bab12a]
	* src/molecule.cpp (modified)
	* src/molecule_fragmentation.cpp (modified)

	FIX: Fix of bug introduced during Vector Refactoring

	Testsuite now ...


Tue, 18 May 2010 15:58:58 GMT Frederik Heber <heber@…> [673c7f]
	* src/molecule_geometry.cpp (modified)
	* tests/regression/Simple_configuration/2/post/test.conf.in (added)
	* tests/regression/Simple_configuration/3/post/test.conf.in (added)

	BUGFIX: molecule::DetermineCenterOfAll() was broken for single atom.
 ...


Tue, 18 May 2010 15:20:52 GMT Frederik Heber <heber@…> [4eb4fe]
	* src/analysis_bonds.cpp (modified)
	* src/analysis_bonds.hpp (modified)
	* src/builder.cpp (modified)
	* src/elements.db (modified)
	* src/elements_db.cpp (added)
	* src/elements_db.hpp (added)
	* src/periodentafel.cpp (modified)
	* src/periodentafel.hpp (modified)
	* src/unittests/AnalysisCorrelationToPointUnitTest.cpp (modified)
	* src/unittests/AnalysisCorrelationToPointUnitTest.hpp (modified)
	* src/unittests/AnalysisCorrelationToSurfaceUnitTest.cpp (modified)
	* src/unittests/AnalysisCorrelationToSurfaceUnitTest.hpp (modified)
	* src/unittests/AnalysisPairCorrelationUnitTest.cpp (modified)
	* src/unittests/AnalysisPairCorrelationUnitTest.hpp (modified)
	* src/unittests/CountBondsUnitTest.cpp (modified)
	* src/unittests/CountBondsUnitTest.hpp (modified)
	* src/unittests/LinkedCellUnitTest.cpp (modified)
	* src/unittests/LinkedCellUnitTest.hpp (modified)
	* src/unittests/Makefile.am (modified)
	* src/unittests/ParserUnitTest.cpp (modified)
	* src/unittests/analysisbondsunittest.cpp (modified)
	* src/unittests/analysisbondsunittest.hpp (modified)
	* src/unittests/bondgraphunittest.cpp (modified)
	* src/unittests/bondgraphunittest.hpp (modified)
	* src/unittests/listofbondsunittest.cpp (modified)
	* src/unittests/listofbondsunittest.hpp (modified)
	* src/unittests/periodentafelTest.cpp (added)
	* src/unittests/periodentafelTest.hpp (added)
	* tests/testsuite.at (modified)

	"-e <db path>" not necessary anymore.

	Removed necessity of ...


Tue, 18 May 2010 15:18:24 GMT Frederik Heber <heber@…> [5079a0]
	* Makefile.am (modified)
	* configure.ac (modified)
	* src/Actions/Makefile.am (added)
	* src/Makefile.am (modified)
	* src/UIElements/CommandLineUI/CommandLineDialog.cpp (moved)
	* src/UIElements/CommandLineUI/CommandLineDialog.hpp (moved)
	* src/UIElements/CommandLineUI/CommandLineStatusIndicator.cpp (moved)
	* src/UIElements/CommandLineUI/CommandLineStatusIndicator.hpp (moved)
	* src/UIElements/CommandLineUI/CommandLineUIFactory.cpp (moved)
	* src/UIElements/CommandLineUI/CommandLineUIFactory.hpp (moved)
	* src/UIElements/CommandLineUI/CommandLineWindow.cpp (moved)
	* src/UIElements/CommandLineUI/CommandLineWindow.hpp (moved)
	* src/UIElements/Dialog.cpp (modified)
	* src/UIElements/MainWindow.cpp (modified)
	* src/UIElements/Makefile.am (added)
	* src/UIElements/Menu/ActionMenuItem.cpp (moved)
	* src/UIElements/Menu/ActionMenuItem.hpp (moved)
	* src/UIElements/Menu/DisplayMenuItem.cpp (moved)
	* src/UIElements/Menu/DisplayMenuItem.hpp (moved)
	* src/UIElements/Menu/Menu.cpp (moved)
	* src/UIElements/Menu/Menu.hpp (moved)
	* src/UIElements/Menu/MenuItem.cpp (moved)
	* src/UIElements/Menu/MenuItem.hpp (moved)
	* src/UIElements/Menu/SeperatorItem.cpp (moved)
	* src/UIElements/Menu/SeperatorItem.hpp (moved)
	* src/UIElements/Menu/SubMenuItem.cpp (moved)
	* src/UIElements/Menu/SubMenuItem.hpp (moved)
	* src/UIElements/Menu/TextMenu.cpp (moved)
	* src/UIElements/Menu/TextMenu.hpp (moved)
	* src/UIElements/TextUI/TextDialog.cpp (moved)
	* src/UIElements/TextUI/TextDialog.hpp (moved)
	* src/UIElements/TextUI/TextStatusIndicator.cpp (moved)
	* src/UIElements/TextUI/TextStatusIndicator.hpp (moved)
	* src/UIElements/TextUI/TextUIFactory.cpp (moved)
	* src/UIElements/TextUI/TextUIFactory.hpp (moved)
	* src/UIElements/TextUI/TextWindow.cpp (moved)
	* src/UIElements/TextUI/TextWindow.hpp (moved)
	* src/UIElements/UIFactory.cpp (modified)
	* src/UIElements/Views/MethodStringView.cpp (moved)
	* src/UIElements/Views/MethodStringView.hpp (moved)
	* src/UIElements/Views/StreamStringView.cpp (moved)
	* src/UIElements/Views/StreamStringView.hpp (moved)
	* src/UIElements/Views/StringView.cpp (moved)
	* src/UIElements/Views/StringView.hpp (moved)
	* src/UIElements/Views/View.cpp (moved)
	* src/UIElements/Views/View.hpp (moved)

	Actions put into libMolecuilderActions, UIElements into ...


Mon, 17 May 2010 17:32:33 GMT Frederik Heber <heber@…> [2a5eb7]
	* tests/testsuite.at (modified)

	TESTFIX: Changed return code on wrong arguments from 255 to 134.

	- ...


Mon, 17 May 2010 17:31:35 GMT Frederik Heber <heber@…> [f65e1f]
	* src/builder.cpp (modified)

	FIX: list of arguments passed to ParseCommandLineOptions() should be ...


Mon, 17 May 2010 17:31:00 GMT Frederik Heber <heber@…> [a77976]
	* src/Actions/MapOfActions.cpp (modified)

	TESTFIX: testsuite looks for a very specific help message.

	- ...


Sun, 16 May 2010 12:06:42 GMT Frederik Heber <heber@…> [daa714]

	Merge remote branch 'bespin/CommandLineActionMapping' into ...


Sat, 15 May 2010 22:14:44 GMT Frederik Heber <heber@…> [f941b1]
	* tests/Tesselations/defs.in (modified)

	Merge branch 'FixTesselationTestDiff' into CommandLineActionMapping


Sat, 15 May 2010 22:11:50 GMT Frederik Heber <heber@…> [12872d]
	* tests/Tesselations/defs.in (modified)

	FIX: Don't compare tesselation files directly but rather sorted list ...


Sat, 15 May 2010 17:56:57 GMT Frederik Heber <heber@…> [97ebf8]
	* src/Actions/ActionRegistry.cpp (modified)
	* src/Actions/ActionRegistry.hpp (modified)
	* src/Actions/AnalysisAction/MolecularVolumeAction.cpp (added)
	* src/Actions/AnalysisAction/MolecularVolumeAction.hpp (added)
	* src/Actions/AnalysisAction/PairCorrelationAction.cpp (added)
	* src/Actions/AnalysisAction/PairCorrelationAction.hpp (added)
	* src/Actions/AnalysisAction/PairCorrelationToPointAction.cpp (added)
	* src/Actions/AnalysisAction/PairCorrelationToPointAction.hpp (added)
	* src/Actions/AnalysisAction/PairCorrelationToSurfaceAction.cpp (added)
	* src/Actions/AnalysisAction/PairCorrelationToSurfaceAction.hpp (added)
	* src/Actions/AnalysisAction/PrincipalAxisSystemAction.cpp (added)
	* src/Actions/AnalysisAction/PrincipalAxisSystemAction.hpp (added)
	* src/Actions/AtomAction/AddAction.cpp (added)
	* src/Actions/AtomAction/AddAction.hpp (added)
	* src/Actions/AtomAction/ChangeElementAction.cpp (added)
	* src/Actions/AtomAction/ChangeElementAction.hpp (added)
	* src/Actions/AtomAction/RemoveAction.cpp (added)
	* src/Actions/AtomAction/RemoveAction.hpp (added)
	* src/Actions/CmdAction/BondLengthTableAction.cpp (added)
	* src/Actions/CmdAction/BondLengthTableAction.hpp (added)
	* src/Actions/CmdAction/ElementDbAction.cpp (added)
	* src/Actions/CmdAction/ElementDbAction.hpp (added)
	* src/Actions/CmdAction/FastParsingAction.cpp (added)
	* src/Actions/CmdAction/FastParsingAction.hpp (added)
	* src/Actions/CmdAction/HelpAction.cpp (modified)
	* src/Actions/CmdAction/VerboseAction.cpp (added)
	* src/Actions/CmdAction/VerboseAction.hpp (added)
	* src/Actions/CmdAction/VersionAction.cpp (modified)
	* src/Actions/FragmentationAction/DepthFirstSearchAction.cpp (added)
	* src/Actions/FragmentationAction/DepthFirstSearchAction.hpp (added)
	* src/Actions/FragmentationAction/FragmentationAction.cpp (added)
	* src/Actions/FragmentationAction/FragmentationAction.hpp (added)
	* src/Actions/FragmentationAction/SubgraphDissectionAction.cpp (added)
	* src/Actions/FragmentationAction/SubgraphDissectionAction.hpp (added)
	* src/Actions/MapOfActions.cpp (added)
	* src/Actions/MapOfActions.hpp (added)
	* src/Actions/MoleculeAction/BondFileAction.cpp (added)
	* src/Actions/MoleculeAction/BondFileAction.hpp (added)
	* src/Actions/MoleculeAction/ChangeNameAction.cpp (modified)
	* src/Actions/MoleculeAction/ChangeNameAction.hpp (modified)
	* src/Actions/MoleculeAction/FillWithMoleculeAction.cpp (added)
	* src/Actions/MoleculeAction/FillWithMoleculeAction.hpp (added)
	* src/Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.cpp (added)
	* src/Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.hpp (added)
	* src/Actions/MoleculeAction/RotateToPrincipalAxisSystemAction.cpp (added)
	* src/Actions/MoleculeAction/RotateToPrincipalAxisSystemAction.hpp (added)
	* src/Actions/MoleculeAction/SaveAdjacencyAction.cpp (added)
	* src/Actions/MoleculeAction/SaveAdjacencyAction.hpp (added)
	* src/Actions/MoleculeAction/SaveBondsAction.cpp (added)
	* src/Actions/MoleculeAction/SaveBondsAction.hpp (added)
	* src/Actions/MoleculeAction/SaveTemperatureAction.cpp (added)
	* src/Actions/MoleculeAction/SaveTemperatureAction.hpp (added)
	* src/Actions/MoleculeAction/SuspendInWaterAction.cpp (added)
	* src/Actions/MoleculeAction/SuspendInWaterAction.hpp (added)
	* src/Actions/MoleculeAction/TranslateAction.cpp (added)
	* src/Actions/MoleculeAction/TranslateAction.hpp (added)
	* src/Actions/MoleculeAction/VerletIntegrationAction.cpp (added)
	* src/Actions/MoleculeAction/VerletIntegrationAction.hpp (added)
	* src/Actions/ParserAction/LoadXyzAction.cpp (modified)
	* src/Actions/ParserAction/SaveXyzAction.cpp (modified)
	* src/Actions/TesselationAction/ConvexEnvelopeAction.cpp (added)
	* src/Actions/TesselationAction/ConvexEnvelopeAction.hpp (added)
	* src/Actions/TesselationAction/NonConvexEnvelopeAction.cpp (added)
	* src/Actions/TesselationAction/NonConvexEnvelopeAction.hpp (added)
	* src/Actions/WorldAction/AddEmptyBoundaryAction.cpp (added)
	* src/Actions/WorldAction/AddEmptyBoundaryAction.hpp (added)
	* src/Actions/WorldAction/BoundInBoxAction.cpp (added)
	* src/Actions/WorldAction/BoundInBoxAction.hpp (added)
	* src/Actions/WorldAction/CenterInBoxAction.cpp (added)
	* src/Actions/WorldAction/CenterInBoxAction.hpp (added)
	* src/Actions/WorldAction/CenterOnEdgeAction.cpp (added)
	* src/Actions/WorldAction/CenterOnEdgeAction.hpp (added)
	* src/Actions/WorldAction/ChangeBoxAction.cpp (added)
	* src/Actions/WorldAction/ChangeBoxAction.hpp (added)
	* src/Actions/WorldAction/RemoveSphereOfAtomsAction.cpp (added)
	* src/Actions/WorldAction/RemoveSphereOfAtomsAction.hpp (added)
	* src/Actions/WorldAction/RepeatBoxAction.cpp (added)
	* src/Actions/WorldAction/RepeatBoxAction.hpp (added)
	* src/Actions/WorldAction/ScaleBoxAction.cpp (added)
	* src/Actions/WorldAction/ScaleBoxAction.hpp (added)
	* src/Actions/WorldAction/SetDefaultNameAction.cpp (added)
	* src/Actions/WorldAction/SetDefaultNameAction.hpp (added)
	* src/Actions/WorldAction/SetGaussianBasisAction.cpp (added)
	* src/Actions/WorldAction/SetGaussianBasisAction.hpp (added)
	* src/CommandLineParser.cpp (modified)
	* src/CommandLineParser.hpp (modified)
	* src/Legacy/oldmenu.cpp (modified)
	* src/Makefile.am (modified)
	* src/Parser/XyzParser.cpp (modified)
	* src/UIElements/CommandLineDialog.cpp (modified)
	* src/UIElements/CommandLineDialog.hpp (modified)
	* src/UIElements/CommandLineWindow.cpp (modified)
	* src/UIElements/CommandLineWindow.hpp (modified)
	* src/UIElements/Dialog.cpp (modified)
	* src/UIElements/Dialog.hpp (modified)
	* src/UIElements/TextDialog.cpp (modified)
	* src/UIElements/TextDialog.hpp (modified)
	* src/UIElements/TextWindow.cpp (modified)
	* src/World.cpp (modified)
	* src/World.hpp (modified)
	* src/bondgraph.hpp (modified)
	* src/builder.cpp (modified)
	* src/molecule.hpp (modified)
	* src/unittests/MapofActionsTest.cpp (added)
	* src/unittests/MapofActionsTest.hpp (added)

	Added all commands defined in ParseCommandLineOptions() as Actions.
 ...


Fri, 14 May 2010 19:57:06 GMT Frederik Heber <heber@…> [498c519]
	* src/unittests/TestRunnerMain.cpp (modified)

	Merge remote branch 'bespin/FixTestRunnerClient' into ...


Fri, 14 May 2010 19:55:36 GMT Frederik Heber <heber@…> [4917cc4]
	* src/unittests/TestRunnerMain.cpp (modified)

	Merge branch 'FixTestRunnerClient' into CommandLineActionMapping


Fri, 14 May 2010 19:53:36 GMT Frederik Heber <heber@…> [cee0a17]
	* src/unittests/TestRunnerMain.cpp (modified)

	FIX: TestRunner is broken when TestRunnerClient.[h|cpp] can not be ...


Sun, 09 May 2010 12:00:08 GMT Frederik Heber <heber@…> [50dfda]
	* src/Actions/CmdAction/VersionAction.cpp (added)
	* src/Actions/CmdAction/VersionAction.hpp (added)
	* src/Makefile.am (modified)
	* src/UIElements/CommandLineWindow.cpp (modified)
	* src/UIElements/CommandLineWindow.hpp (modified)
	* src/builder.cpp (modified)

	Added VersionAction.

	- new CmdAction/VersionAction that prints the ...


Sun, 09 May 2010 11:59:35 GMT Frederik Heber <heber@…> [86466e]
	* src/Actions/CmdAction/HelpAction.cpp (modified)
	* src/UIElements/CommandLineDialog.cpp (modified)
	* src/UIElements/CommandLineDialog.hpp (modified)
	* src/UIElements/CommandLineUIFactory.cpp (modified)
	* src/UIElements/Dialog.cpp (modified)
	* src/UIElements/Dialog.hpp (modified)
	* src/UIElements/TextDialog.cpp (modified)
	* src/UIElements/TextDialog.hpp (modified)

	new query class EmptyQuery for showing text messages.

	- new class ...


Sat, 08 May 2010 22:59:14 GMT Frederik Heber <heber@…> [148d8f0]
	* src/builder.cpp (modified)

	FIX: cleanup() still deleted configuration although is part of the ...


Sat, 08 May 2010 22:57:18 GMT Frederik Heber <heber@…> [bcd072]
	* src/CommandLineParser.cpp (modified)
	* src/CommandLineParser.hpp (modified)

	FIX: wrong use of Singleton pattern for CommandLineParser.

	- we set ...


Sat, 08 May 2010 22:57:04 GMT Frederik Heber <heber@…> [d90762]
	* src/UIElements/CommandLineDialog.cpp (modified)

	Rewrote all CommandLineDialog's Query... to use the ...


Sat, 08 May 2010 22:51:22 GMT Frederik Heber <heber@…> [4380af]
	* src/UIElements/CommandLineWindow.cpp (modified)

	CommandLineWindow::display() goes through all Actions in ...


Sat, 08 May 2010 22:00:57 GMT Frederik Heber <heber@…> [e3ecc1a]
	* src/Actions/CmdAction/HelpAction.cpp (added)
	* src/Actions/CmdAction/HelpAction.hpp (added)
	* src/CommandLineParser.hpp (modified)
	* src/Makefile.am (modified)
	* src/UIElements/CommandLineWindow.cpp (modified)

	New HelpAction that will print the help from boost::program_options.
 ...


Sat, 08 May 2010 22:00:16 GMT Frederik Heber <heber@…> [fa56f0]
	* src/Actions/ActionRegistry.cpp (modified)
	* src/Actions/ActionRegistry.hpp (modified)

	ActionRegistry now is iterable due to new functons getBeginIter() and ...


Sat, 08 May 2010 22:00:03 GMT Frederik Heber <heber@…> [808fd3]
	* src/Actions/ParserAction/LoadXyzAction.cpp (modified)
	* src/Actions/ParserAction/SaveXyzAction.cpp (modified)

	performUndo/Redo were missing for ParserLoadXyzAction and ...


Sat, 08 May 2010 21:59:27 GMT Frederik Heber <heber@…> [d893f79]
	* src/UIElements/CommandLineUIFactory.cpp (modified)
	* src/UIElements/CommandLineUIFactory.hpp (modified)
	* src/UIElements/CommandLineWindow.cpp (modified)
	* src/UIElements/CommandLineWindow.hpp (modified)
	* src/UIElements/MainWindow.hpp (modified)
	* src/UIElements/TextUIFactory.cpp (modified)
	* src/UIElements/TextUIFactory.hpp (modified)
	* src/UIElements/TextWindow.cpp (modified)
	* src/UIElements/TextWindow.hpp (modified)
	* src/UIElements/UIFactory.hpp (modified)
	* src/builder.cpp (modified)

	removed menuPopulaters from MainWindow.

	- menuPopulaters is too ...


Sat, 08 May 2010 20:34:05 GMT Frederik Heber <heber@…> [8e1f7af]
	* src/UIElements/TextWindow.cpp (modified)
	* src/UIElements/UIFactory.hpp (modified)
	* src/World.cpp (modified)
	* src/World.hpp (modified)
	* src/builder.cpp (modified)

	class config added to World.

	- World now has the global ...


Sat, 08 May 2010 20:14:04 GMT Frederik Heber <heber@…> [4a75d9]
	* src/UIElements/CommandLineUIFactory.cpp (modified)
	* src/UIElements/CommandLineUIFactory.hpp (modified)
	* src/UIElements/CommandLineWindow.cpp (modified)
	* src/UIElements/CommandLineWindow.hpp (modified)
	* src/UIElements/MainWindow.hpp (modified)
	* src/UIElements/TextUIFactory.cpp (modified)
	* src/UIElements/TextUIFactory.hpp (modified)
	* src/UIElements/TextWindow.cpp (modified)
	* src/UIElements/TextWindow.hpp (modified)
	* src/UIElements/UIFactory.hpp (modified)
	* src/builder.cpp (modified)

	...UIFactory::makeMainWindow() now has only a single parameter, ...


Sat, 08 May 2010 20:06:45 GMT Frederik Heber <heber@…> [ecb799]
	* src/Actions/ParserAction/LoadXyzAction.cpp (modified)
	* src/Actions/ParserAction/SaveXyzAction.cpp (modified)
	* src/Parser/TremoloParser.cpp (modified)

	shortened NAME of ParserLoadXyz and ParserSaveXyz actions, as it is ...


Sat, 08 May 2010 19:14:29 GMT Frederik Heber <heber@…> [c6efc1]
	* configure.ac (modified)
	* src/CommandLineParser.cpp (added)
	* src/CommandLineParser.hpp (added)
	* src/Makefile.am (modified)
	* src/builder.cpp (modified)

	Begin of Refactoring of ParseCommandLineOptions().

	- new singleton ...


Sat, 08 May 2010 18:39:10 GMT Frederik Heber <heber@…> [18eecf]
	* src/unittests/Makefile.am (modified)

	minor change: put entries in molecuilder/src/unittests/Makefile.am ...


Sat, 08 May 2010 18:36:22 GMT Frederik Heber <heber@…> [03bb99]
	* src/Actions/MoleculeAction/ChangeNameAction.cpp (moved)
	* src/Actions/MoleculeAction/ChangeNameAction.hpp (moved)
	* src/Actions/ParserAction/LoadXyzAction.cpp (added)
	* src/Actions/ParserAction/LoadXyzAction.hpp (added)
	* src/Actions/ParserAction/SaveXyzAction.cpp (added)
	* src/Actions/ParserAction/SaveXyzAction.hpp (added)
	* src/Makefile.am (modified)
	* src/builder.cpp (modified)

	Introducing small actions.

	- new directory  MoleculeAction to ...


Sat, 08 May 2010 18:30:53 GMT Frederik Heber <heber@…> [a2ab15]
	* src/Makefile.am (modified)
	* src/UIElements/CommandLineDialog.cpp (added)
	* src/UIElements/CommandLineDialog.hpp (added)
	* src/UIElements/CommandLineStatusIndicator.cpp (added)
	* src/UIElements/CommandLineStatusIndicator.hpp (added)
	* src/UIElements/CommandLineUIFactory.cpp (added)
	* src/UIElements/CommandLineUIFactory.hpp (added)
	* src/UIElements/CommandLineWindow.cpp (added)
	* src/UIElements/CommandLineWindow.hpp (added)
	* src/UIElements/Dialog.cpp (modified)
	* src/UIElements/Dialog.hpp (modified)
	* src/UIElements/TextDialog.cpp (modified)
	* src/UIElements/TextDialog.hpp (modified)
	* src/UIElements/UIFactory.cpp (modified)
	* src/UIElements/UIFactory.hpp (modified)

	Extended UIFactory to a CommandLine derivate.

	- Dialog now has ...


Sat, 08 May 2010 18:27:57 GMT Frederik Heber <heber@…> [efc3cb]
	* src/Makefile.am (modified)

	minor change: put entries in molecuilder/src/Makefile.am into ...


Sat, 08 May 2010 12:48:58 GMT Tillmann Crueger <crueger@…> [6d789df]
	* tests/Tesselations/1_2-dimethoxyethane.test (modified)
	* tests/Tesselations/1_2-dimethoxyethane/1.5/NonConvexEnvelope-1_2-dimethoxyethane.dat (added)
	* tests/Tesselations/1_2-dimethoxyethane/2.5/NonConvexEnvelope-1_2-dimethoxyethane.dat (added)
	* tests/Tesselations/1_2-dimethoxyethane/2/NonConvexEnvelope-1_2-dimethoxyethane.dat (added)
	* tests/Tesselations/1_2-dimethoxyethane/25/NonConvexEnvelope-1_2-dimethoxyethane.dat (added)
	* tests/Tesselations/1_2-dimethoxyethane/3.5/NonConvexEnvelope-1_2-dimethoxyethane.dat (added)
	* tests/Tesselations/1_2-dimethoxyethane/3/NonConvexEnvelope-1_2-dimethoxyethane.dat (added)
	* tests/Tesselations/1_2-dimethoxyethane/4/NonConvexEnvelope-1_2-dimethoxyethane.dat (added)
	* tests/Tesselations/1_2-dimethoxyethane/NonConvexEnvelope-1_2-dimethoxyethane.dat (deleted)
	* tests/Tesselations/1_2-dimethylbenzene.test (modified)
	* tests/Tesselations/1_2-dimethylbenzene/1.5/NonConvexEnvelope-1_2-dimethylbenzene.dat (added)
	* tests/Tesselations/1_2-dimethylbenzene/2.5/NonConvexEnvelope-1_2-dimethylbenzene.dat (added)
	* tests/Tesselations/1_2-dimethylbenzene/2/NonConvexEnvelope-1_2-dimethylbenzene.dat (added)
	* tests/Tesselations/1_2-dimethylbenzene/25/NonConvexEnvelope-1_2-dimethylbenzene.dat (added)
	* tests/Tesselations/1_2-dimethylbenzene/3.5/NonConvexEnvelope-1_2-dimethylbenzene.dat (added)
	* tests/Tesselations/1_2-dimethylbenzene/3/NonConvexEnvelope-1_2-dimethylbenzene.dat (added)
	* tests/Tesselations/1_2-dimethylbenzene/4/NonConvexEnvelope-1_2-dimethylbenzene.dat (added)
	* tests/Tesselations/1_2-dimethylbenzene/NonConvexEnvelope-1_2-dimethylbenzene.dat (deleted)
	* tests/Tesselations/2-methylcyclohexanone.test (modified)
	* tests/Tesselations/2-methylcyclohexanone/1.5/NonConvexEnvelope-2-methylcyclohexanone.dat (added)
	* tests/Tesselations/2-methylcyclohexanone/2.5/NonConvexEnvelope-2-methylcyclohexanone.dat (added)
	* tests/Tesselations/2-methylcyclohexanone/2/NonConvexEnvelope-2-methylcyclohexanone.dat (added)
	* tests/Tesselations/2-methylcyclohexanone/25/NonConvexEnvelope-2-methylcyclohexanone.dat (added)
	* tests/Tesselations/2-methylcyclohexanone/3.5/NonConvexEnvelope-2-methylcyclohexanone.dat (added)
	* tests/Tesselations/2-methylcyclohexanone/3/NonConvexEnvelope-2-methylcyclohexanone.dat (added)
	* tests/Tesselations/2-methylcyclohexanone/4/NonConvexEnvelope-2-methylcyclohexanone.dat (added)
	* tests/Tesselations/2-methylcyclohexanone/NonConvexEnvelope-2-methylcyclohexanone.dat (deleted)
	* tests/Tesselations/C16_0-Torus.test (deleted)
	* tests/Tesselations/C16_0-Torus/C16_0-Torus.xyz (deleted)
	* tests/Tesselations/C16_0-Torus/NonConvexEnvelope-C16_0-Torus.dat (deleted)
	* tests/Tesselations/Makefile.am (modified)
	* tests/Tesselations/N_N-dimethylacetamide.test (modified)
	* tests/Tesselations/N_N-dimethylacetamide/1.5/NonConvexEnvelope-N_N-dimethylacetamide.dat (added)
	* tests/Tesselations/N_N-dimethylacetamide/2.5/NonConvexEnvelope-N_N-dimethylacetamide.dat (added)
	* tests/Tesselations/N_N-dimethylacetamide/2/NonConvexEnvelope-N_N-dimethylacetamide.dat (added)
	* tests/Tesselations/N_N-dimethylacetamide/25/NonConvexEnvelope-N_N-dimethylacetamide.dat (added)
	* tests/Tesselations/N_N-dimethylacetamide/3.5/NonConvexEnvelope-N_N-dimethylacetamide.dat (added)
	* tests/Tesselations/N_N-dimethylacetamide/3/NonConvexEnvelope-N_N-dimethylacetamide.dat (added)
	* tests/Tesselations/N_N-dimethylacetamide/4/NonConvexEnvelope-N_N-dimethylacetamide.dat (moved)
	* tests/Tesselations/benzene.test (modified)
	* tests/Tesselations/benzene/1.5/NonConvexEnvelope-benzene.dat (added)
	* tests/Tesselations/benzene/2.5/NonConvexEnvelope-benzene.dat (added)
	* tests/Tesselations/benzene/2/NonConvexEnvelope-benzene.dat (added)
	* tests/Tesselations/benzene/25/NonConvexEnvelope-benzene.dat (added)
	* tests/Tesselations/benzene/3.5/NonConvexEnvelope-benzene.dat (added)
	* tests/Tesselations/benzene/3/NonConvexEnvelope-benzene.dat (added)
	* tests/Tesselations/benzene/4/NonConvexEnvelope-benzene.dat (added)
	* tests/Tesselations/benzene/NonConvexEnvelope-benzene.dat (deleted)
	* tests/Tesselations/cholesterol.test (modified)
	* tests/Tesselations/cholesterol/1.5/NonConvexEnvelope-cholesterol.dat (added)
	* tests/Tesselations/cholesterol/2.5/NonConvexEnvelope-cholesterol.dat (added)
	* tests/Tesselations/cholesterol/2/NonConvexEnvelope-cholesterol.dat (added)
	* tests/Tesselations/cholesterol/25/NonConvexEnvelope-cholesterol.dat (added)
	* tests/Tesselations/cholesterol/3.5/NonConvexEnvelope-cholesterol.dat (added)
	* tests/Tesselations/cholesterol/3/NonConvexEnvelope-cholesterol.dat (added)
	* tests/Tesselations/cholesterol/4/NonConvexEnvelope-cholesterol.dat (added)
	* tests/Tesselations/cholesterol/NonConvexEnvelope-cholesterol.dat (deleted)
	* tests/Tesselations/cluster.test (deleted)
	* tests/Tesselations/cluster/NonConvexEnvelope-cluster.dat (deleted)
	* tests/Tesselations/cluster/cluster.dbond (deleted)
	* tests/Tesselations/cluster/cluster.xyz (deleted)
	* tests/Tesselations/cycloheptane.test (modified)
	* tests/Tesselations/cycloheptane/1.5/NonConvexEnvelope-cycloheptane.dat (added)
	* tests/Tesselations/cycloheptane/2.5/NonConvexEnvelope-cycloheptane.dat (added)
	* tests/Tesselations/cycloheptane/2/NonConvexEnvelope-cycloheptane.dat (added)
	* tests/Tesselations/cycloheptane/25/NonConvexEnvelope-cycloheptane.dat (added)
	* tests/Tesselations/cycloheptane/3.5/NonConvexEnvelope-cycloheptane.dat (added)
	* tests/Tesselations/cycloheptane/3/NonConvexEnvelope-cycloheptane.dat (added)
	* tests/Tesselations/cycloheptane/4/NonConvexEnvelope-cycloheptane.dat (added)
	* tests/Tesselations/cycloheptane/NonConvexEnvelope-cycloheptane.dat (deleted)
	* tests/Tesselations/defs.in (modified)
	* tests/Tesselations/dimethyl_bromomalonate.test (modified)
	* tests/Tesselations/dimethyl_bromomalonate/1.5/NonConvexEnvelope-dimethyl_bromomalonate.dat (added)
	* tests/Tesselations/dimethyl_bromomalonate/2.5/NonConvexEnvelope-dimethyl_bromomalonate.dat (added)
	* tests/Tesselations/dimethyl_bromomalonate/2/NonConvexEnvelope-dimethyl_bromomalonate.dat (added)
	* tests/Tesselations/dimethyl_bromomalonate/25/NonConvexEnvelope-dimethyl_bromomalonate.dat (added)
	* tests/Tesselations/dimethyl_bromomalonate/3.5/NonConvexEnvelope-dimethyl_bromomalonate.dat (added)
	* tests/Tesselations/dimethyl_bromomalonate/3/NonConvexEnvelope-dimethyl_bromomalonate.dat (added)
	* tests/Tesselations/dimethyl_bromomalonate/4/NonConvexEnvelope-dimethyl_bromomalonate.dat (added)
	* tests/Tesselations/dimethyl_bromomalonate/NonConvexEnvelope-dimethyl_bromomalonate.dat (deleted)
	* tests/Tesselations/glucose.test (modified)
	* tests/Tesselations/glucose/1.5/NonConvexEnvelope-glucose.dat (added)
	* tests/Tesselations/glucose/2.5/NonConvexEnvelope-glucose.dat (added)
	* tests/Tesselations/glucose/2/NonConvexEnvelope-glucose.dat (added)
	* tests/Tesselations/glucose/25/NonConvexEnvelope-glucose.dat (added)
	* tests/Tesselations/glucose/3.5/NonConvexEnvelope-glucose.dat (added)
	* tests/Tesselations/glucose/3/NonConvexEnvelope-glucose.dat (added)
	* tests/Tesselations/glucose/4/NonConvexEnvelope-glucose.dat (added)
	* tests/Tesselations/glucose/NonConvexEnvelope-glucose.dat (deleted)
	* tests/Tesselations/heptan.test (modified)
	* tests/Tesselations/heptan/1.5/NonConvexEnvelope-heptan.dat (added)
	* tests/Tesselations/heptan/2.5/NonConvexEnvelope-heptan.dat (added)
	* tests/Tesselations/heptan/2/NonConvexEnvelope-heptan.dat (added)
	* tests/Tesselations/heptan/25/NonConvexEnvelope-heptan.dat (added)
	* tests/Tesselations/heptan/3.5/NonConvexEnvelope-heptan.dat (added)
	* tests/Tesselations/heptan/3/NonConvexEnvelope-heptan.dat (added)
	* tests/Tesselations/heptan/4/NonConvexEnvelope-heptan.dat (added)
	* tests/Tesselations/heptan/NonConvexEnvelope-heptan.dat (deleted)
	* tests/Tesselations/isoleucine.test (modified)
	* tests/Tesselations/isoleucine/1.5/NonConvexEnvelope-isoleucine.dat (added)
	* tests/Tesselations/isoleucine/2.5/NonConvexEnvelope-isoleucine.dat (added)
	* tests/Tesselations/isoleucine/2/NonConvexEnvelope-isoleucine.dat (added)
	* tests/Tesselations/isoleucine/25/NonConvexEnvelope-isoleucine.dat (added)
	* tests/Tesselations/isoleucine/3.5/NonConvexEnvelope-isoleucine.dat (added)
	* tests/Tesselations/isoleucine/3/NonConvexEnvelope-isoleucine.dat (added)
	* tests/Tesselations/isoleucine/4/NonConvexEnvelope-isoleucine.dat (added)
	* tests/Tesselations/isoleucine/NonConvexEnvelope-isoleucine.dat (deleted)
	* tests/Tesselations/neohexane.test (modified)
	* tests/Tesselations/neohexane/1.5/NonConvexEnvelope-neohexane.dat (added)
	* tests/Tesselations/neohexane/2.5/NonConvexEnvelope-neohexane.dat (added)
	* tests/Tesselations/neohexane/2/NonConvexEnvelope-neohexane.dat (added)
	* tests/Tesselations/neohexane/25/NonConvexEnvelope-neohexane.dat (added)
	* tests/Tesselations/neohexane/3.5/NonConvexEnvelope-neohexane.dat (added)
	* tests/Tesselations/neohexane/3/NonConvexEnvelope-neohexane.dat (added)
	* tests/Tesselations/neohexane/4/NonConvexEnvelope-neohexane.dat (added)
	* tests/Tesselations/neohexane/NonConvexEnvelope-neohexane.dat (deleted)
	* tests/Tesselations/proline.test (modified)
	* tests/Tesselations/proline/1.5/NonConvexEnvelope-proline.dat (added)
	* tests/Tesselations/proline/2.5/NonConvexEnvelope-proline.dat (added)
	* tests/Tesselations/proline/2/NonConvexEnvelope-proline.dat (added)
	* tests/Tesselations/proline/25/NonConvexEnvelope-proline.dat (added)
	* tests/Tesselations/proline/3.5/NonConvexEnvelope-proline.dat (added)
	* tests/Tesselations/proline/3/NonConvexEnvelope-proline.dat (added)
	* tests/Tesselations/proline/4/NonConvexEnvelope-proline.dat (added)
	* tests/Tesselations/proline/NonConvexEnvelope-proline.dat (deleted)
	* tests/Tesselations/putrescine.test (modified)
	* tests/Tesselations/putrescine/1.5/NonConvexEnvelope-putrescine.dat (added)
	* tests/Tesselations/putrescine/2.5/NonConvexEnvelope-putrescine.dat (added)
	* tests/Tesselations/putrescine/2/NonConvexEnvelope-putrescine.dat (added)
	* tests/Tesselations/putrescine/25/NonConvexEnvelope-putrescine.dat (added)
	* tests/Tesselations/putrescine/3.5/NonConvexEnvelope-putrescine.dat (added)
	* tests/Tesselations/putrescine/3/NonConvexEnvelope-putrescine.dat (added)
	* tests/Tesselations/putrescine/4/NonConvexEnvelope-putrescine.dat (added)
	* tests/Tesselations/putrescine/NonConvexEnvelope-putrescine.dat (deleted)
	* tests/Tesselations/round_cluster.test (deleted)
	* tests/Tesselations/round_cluster/NonConvexEnvelope-round_cluster.dat (deleted)
	* tests/Tesselations/round_cluster/round_cluster.dbond (deleted)
	* tests/Tesselations/round_cluster/round_cluster.xyz (deleted)
	* tests/Tesselations/tartaric_acid.test (modified)
	* tests/Tesselations/tartaric_acid/1.5/NonConvexEnvelope-tartaric_acid.dat (added)
	* tests/Tesselations/tartaric_acid/2.5/NonConvexEnvelope-tartaric_acid.dat (added)
	* tests/Tesselations/tartaric_acid/2/NonConvexEnvelope-tartaric_acid.dat (added)
	* tests/Tesselations/tartaric_acid/25/NonConvexEnvelope-tartaric_acid.dat (added)
	* tests/Tesselations/tartaric_acid/3.5/NonConvexEnvelope-tartaric_acid.dat (added)
	* tests/Tesselations/tartaric_acid/3/NonConvexEnvelope-tartaric_acid.dat (added)
	* tests/Tesselations/tartaric_acid/4/NonConvexEnvelope-tartaric_acid.dat (added)
	* tests/Tesselations/tartaric_acid/NonConvexEnvelope-tartaric_acid.dat (deleted)

	Merge commit 'Gitosis/StructureRefactoring' into StructureRefactoring


Sat, 08 May 2010 12:47:57 GMT Tillmann Crueger <crueger@…> [68f03d]
	* src/Helpers/MemDebug.cpp (modified)
	* src/analysis_bonds.cpp (modified)
	* src/atom.cpp (modified)
	* src/atom_bondedparticle.cpp (modified)
	* src/atom_graphnode.cpp (modified)
	* src/atom_particleinfo.cpp (modified)
	* src/atom_particleinfo.hpp (modified)
	* src/bond.cpp (modified)
	* src/builder.cpp (modified)
	* src/config.cpp (modified)
	* src/molecule.cpp (modified)
	* src/molecule_fragmentation.cpp (modified)
	* src/molecule_geometry.cpp (modified)
	* src/molecule_graph.cpp (modified)
	* src/moleculelist.cpp (modified)
	* src/parser.cpp (modified)
	* src/tesselation.cpp (modified)
	* src/tesselationhelpers.cpp (modified)
	* src/unittests/LinkedCellUnitTest.cpp (modified)
	* src/unittests/tesselation_boundarytriangleunittest.cpp (modified)
	* src/unittests/tesselation_insideoutsideunittest.cpp (modified)
	* src/unittests/tesselationunittest.cpp (modified)

	FIX: Memory corruption in particleInfo class


Sat, 08 May 2010 12:17:30 GMT Frederik Heber <heber@…> [b9b604]
	* src/Makefile.am (modified)
	* src/Parser/ChangeTracker.cpp (added)
	* src/Parser/ChangeTracker.hpp (added)
	* src/Parser/FormatParser.cpp (added)
	* src/Parser/FormatParser.hpp (added)
	* src/Parser/TremoloParser.cpp (added)
	* src/Parser/TremoloParser.hpp (added)
	* src/Parser/XyzParser.cpp (added)
	* src/Parser/XyzParser.hpp (added)
	* src/atom_bondedparticle.cpp (modified)
	* src/atom_bondedparticle.hpp (modified)
	* src/atom_particleinfo.cpp (modified)
	* src/bond.cpp (modified)
	* src/unittests/Makefile.am (modified)
	* src/unittests/ParserUnitTest.cpp (added)
	* src/unittests/ParserUnitTest.hpp (added)
	* src/unittests/SingletonTest.cpp (modified)

	Merge branch 'StateAndFormatParser' into CommandLineActionMapping
 ...


Sat, 08 May 2010 11:33:50 GMT Frederik Heber <heber@…> [bdedb1]
	* tests/Tesselations/1_2-dimethoxyethane.test (modified)
	* tests/Tesselations/1_2-dimethoxyethane/1.5/NonConvexEnvelope-1_2-dimethoxyethane.dat (added)
	* tests/Tesselations/1_2-dimethoxyethane/2.5/NonConvexEnvelope-1_2-dimethoxyethane.dat (added)
	* tests/Tesselations/1_2-dimethoxyethane/2/NonConvexEnvelope-1_2-dimethoxyethane.dat (added)
	* tests/Tesselations/1_2-dimethoxyethane/25/NonConvexEnvelope-1_2-dimethoxyethane.dat (added)
	* tests/Tesselations/1_2-dimethoxyethane/3.5/NonConvexEnvelope-1_2-dimethoxyethane.dat (added)
	* tests/Tesselations/1_2-dimethoxyethane/3/NonConvexEnvelope-1_2-dimethoxyethane.dat (added)
	* tests/Tesselations/1_2-dimethoxyethane/4/NonConvexEnvelope-1_2-dimethoxyethane.dat (added)
	* tests/Tesselations/1_2-dimethoxyethane/NonConvexEnvelope-1_2-dimethoxyethane.dat (deleted)
	* tests/Tesselations/1_2-dimethylbenzene.test (modified)
	* tests/Tesselations/1_2-dimethylbenzene/1.5/NonConvexEnvelope-1_2-dimethylbenzene.dat (added)
	* tests/Tesselations/1_2-dimethylbenzene/2.5/NonConvexEnvelope-1_2-dimethylbenzene.dat (added)
	* tests/Tesselations/1_2-dimethylbenzene/2/NonConvexEnvelope-1_2-dimethylbenzene.dat (added)
	* tests/Tesselations/1_2-dimethylbenzene/25/NonConvexEnvelope-1_2-dimethylbenzene.dat (added)
	* tests/Tesselations/1_2-dimethylbenzene/3.5/NonConvexEnvelope-1_2-dimethylbenzene.dat (added)
	* tests/Tesselations/1_2-dimethylbenzene/3/NonConvexEnvelope-1_2-dimethylbenzene.dat (added)
	* tests/Tesselations/1_2-dimethylbenzene/4/NonConvexEnvelope-1_2-dimethylbenzene.dat (added)
	* tests/Tesselations/1_2-dimethylbenzene/NonConvexEnvelope-1_2-dimethylbenzene.dat (deleted)
	* tests/Tesselations/2-methylcyclohexanone.test (modified)
	* tests/Tesselations/2-methylcyclohexanone/1.5/NonConvexEnvelope-2-methylcyclohexanone.dat (added)
	* tests/Tesselations/2-methylcyclohexanone/2.5/NonConvexEnvelope-2-methylcyclohexanone.dat (added)
	* tests/Tesselations/2-methylcyclohexanone/2/NonConvexEnvelope-2-methylcyclohexanone.dat (added)
	* tests/Tesselations/2-methylcyclohexanone/25/NonConvexEnvelope-2-methylcyclohexanone.dat (added)
	* tests/Tesselations/2-methylcyclohexanone/3.5/NonConvexEnvelope-2-methylcyclohexanone.dat (added)
	* tests/Tesselations/2-methylcyclohexanone/3/NonConvexEnvelope-2-methylcyclohexanone.dat (added)
	* tests/Tesselations/2-methylcyclohexanone/4/NonConvexEnvelope-2-methylcyclohexanone.dat (added)
	* tests/Tesselations/2-methylcyclohexanone/NonConvexEnvelope-2-methylcyclohexanone.dat (deleted)
	* tests/Tesselations/C16_0-Torus.test (deleted)
	* tests/Tesselations/C16_0-Torus/C16_0-Torus.xyz (deleted)
	* tests/Tesselations/C16_0-Torus/NonConvexEnvelope-C16_0-Torus.dat (deleted)
	* tests/Tesselations/Makefile.am (modified)
	* tests/Tesselations/N_N-dimethylacetamide.test (modified)
	* tests/Tesselations/N_N-dimethylacetamide/1.5/NonConvexEnvelope-N_N-dimethylacetamide.dat (added)
	* tests/Tesselations/N_N-dimethylacetamide/2.5/NonConvexEnvelope-N_N-dimethylacetamide.dat (added)
	* tests/Tesselations/N_N-dimethylacetamide/2/NonConvexEnvelope-N_N-dimethylacetamide.dat (added)
	* tests/Tesselations/N_N-dimethylacetamide/25/NonConvexEnvelope-N_N-dimethylacetamide.dat (added)
	* tests/Tesselations/N_N-dimethylacetamide/3.5/NonConvexEnvelope-N_N-dimethylacetamide.dat (added)
	* tests/Tesselations/N_N-dimethylacetamide/3/NonConvexEnvelope-N_N-dimethylacetamide.dat (added)
	* tests/Tesselations/N_N-dimethylacetamide/4/NonConvexEnvelope-N_N-dimethylacetamide.dat (moved)
	* tests/Tesselations/benzene.test (modified)
	* tests/Tesselations/benzene/1.5/NonConvexEnvelope-benzene.dat (added)
	* tests/Tesselations/benzene/2.5/NonConvexEnvelope-benzene.dat (added)
	* tests/Tesselations/benzene/2/NonConvexEnvelope-benzene.dat (added)
	* tests/Tesselations/benzene/25/NonConvexEnvelope-benzene.dat (added)
	* tests/Tesselations/benzene/3.5/NonConvexEnvelope-benzene.dat (added)
	* tests/Tesselations/benzene/3/NonConvexEnvelope-benzene.dat (added)
	* tests/Tesselations/benzene/4/NonConvexEnvelope-benzene.dat (added)
	* tests/Tesselations/benzene/NonConvexEnvelope-benzene.dat (deleted)
	* tests/Tesselations/cholesterol.test (modified)
	* tests/Tesselations/cholesterol/1.5/NonConvexEnvelope-cholesterol.dat (added)
	* tests/Tesselations/cholesterol/2.5/NonConvexEnvelope-cholesterol.dat (added)
	* tests/Tesselations/cholesterol/2/NonConvexEnvelope-cholesterol.dat (added)
	* tests/Tesselations/cholesterol/25/NonConvexEnvelope-cholesterol.dat (added)
	* tests/Tesselations/cholesterol/3.5/NonConvexEnvelope-cholesterol.dat (added)
	* tests/Tesselations/cholesterol/3/NonConvexEnvelope-cholesterol.dat (added)
	* tests/Tesselations/cholesterol/4/NonConvexEnvelope-cholesterol.dat (added)
	* tests/Tesselations/cholesterol/NonConvexEnvelope-cholesterol.dat (deleted)
	* tests/Tesselations/cluster.test (deleted)
	* tests/Tesselations/cluster/NonConvexEnvelope-cluster.dat (deleted)
	* tests/Tesselations/cluster/cluster.dbond (deleted)
	* tests/Tesselations/cluster/cluster.xyz (deleted)
	* tests/Tesselations/cycloheptane.test (modified)
	* tests/Tesselations/cycloheptane/1.5/NonConvexEnvelope-cycloheptane.dat (added)
	* tests/Tesselations/cycloheptane/2.5/NonConvexEnvelope-cycloheptane.dat (added)
	* tests/Tesselations/cycloheptane/2/NonConvexEnvelope-cycloheptane.dat (added)
	* tests/Tesselations/cycloheptane/25/NonConvexEnvelope-cycloheptane.dat (added)
	* tests/Tesselations/cycloheptane/3.5/NonConvexEnvelope-cycloheptane.dat (added)
	* tests/Tesselations/cycloheptane/3/NonConvexEnvelope-cycloheptane.dat (added)
	* tests/Tesselations/cycloheptane/4/NonConvexEnvelope-cycloheptane.dat (added)
	* tests/Tesselations/cycloheptane/NonConvexEnvelope-cycloheptane.dat (deleted)
	* tests/Tesselations/defs.in (modified)
	* tests/Tesselations/dimethyl_bromomalonate.test (modified)
	* tests/Tesselations/dimethyl_bromomalonate/1.5/NonConvexEnvelope-dimethyl_bromomalonate.dat (added)
	* tests/Tesselations/dimethyl_bromomalonate/2.5/NonConvexEnvelope-dimethyl_bromomalonate.dat (added)
	* tests/Tesselations/dimethyl_bromomalonate/2/NonConvexEnvelope-dimethyl_bromomalonate.dat (added)
	* tests/Tesselations/dimethyl_bromomalonate/25/NonConvexEnvelope-dimethyl_bromomalonate.dat (added)
	* tests/Tesselations/dimethyl_bromomalonate/3.5/NonConvexEnvelope-dimethyl_bromomalonate.dat (added)
	* tests/Tesselations/dimethyl_bromomalonate/3/NonConvexEnvelope-dimethyl_bromomalonate.dat (added)
	* tests/Tesselations/dimethyl_bromomalonate/4/NonConvexEnvelope-dimethyl_bromomalonate.dat (added)
	* tests/Tesselations/dimethyl_bromomalonate/NonConvexEnvelope-dimethyl_bromomalonate.dat (deleted)
	* tests/Tesselations/glucose.test (modified)
	* tests/Tesselations/glucose/1.5/NonConvexEnvelope-glucose.dat (added)
	* tests/Tesselations/glucose/2.5/NonConvexEnvelope-glucose.dat (added)
	* tests/Tesselations/glucose/2/NonConvexEnvelope-glucose.dat (added)
	* tests/Tesselations/glucose/25/NonConvexEnvelope-glucose.dat (added)
	* tests/Tesselations/glucose/3.5/NonConvexEnvelope-glucose.dat (added)
	* tests/Tesselations/glucose/3/NonConvexEnvelope-glucose.dat (added)
	* tests/Tesselations/glucose/4/NonConvexEnvelope-glucose.dat (added)
	* tests/Tesselations/glucose/NonConvexEnvelope-glucose.dat (deleted)
	* tests/Tesselations/heptan.test (modified)
	* tests/Tesselations/heptan/1.5/NonConvexEnvelope-heptan.dat (added)
	* tests/Tesselations/heptan/2.5/NonConvexEnvelope-heptan.dat (added)
	* tests/Tesselations/heptan/2/NonConvexEnvelope-heptan.dat (added)
	* tests/Tesselations/heptan/25/NonConvexEnvelope-heptan.dat (added)
	* tests/Tesselations/heptan/3.5/NonConvexEnvelope-heptan.dat (added)
	* tests/Tesselations/heptan/3/NonConvexEnvelope-heptan.dat (added)
	* tests/Tesselations/heptan/4/NonConvexEnvelope-heptan.dat (added)
	* tests/Tesselations/heptan/NonConvexEnvelope-heptan.dat (deleted)
	* tests/Tesselations/isoleucine.test (modified)
	* tests/Tesselations/isoleucine/1.5/NonConvexEnvelope-isoleucine.dat (added)
	* tests/Tesselations/isoleucine/2.5/NonConvexEnvelope-isoleucine.dat (added)
	* tests/Tesselations/isoleucine/2/NonConvexEnvelope-isoleucine.dat (added)
	* tests/Tesselations/isoleucine/25/NonConvexEnvelope-isoleucine.dat (added)
	* tests/Tesselations/isoleucine/3.5/NonConvexEnvelope-isoleucine.dat (added)
	* tests/Tesselations/isoleucine/3/NonConvexEnvelope-isoleucine.dat (added)
	* tests/Tesselations/isoleucine/4/NonConvexEnvelope-isoleucine.dat (added)
	* tests/Tesselations/isoleucine/NonConvexEnvelope-isoleucine.dat (deleted)
	* tests/Tesselations/neohexane.test (modified)
	* tests/Tesselations/neohexane/1.5/NonConvexEnvelope-neohexane.dat (added)
	* tests/Tesselations/neohexane/2.5/NonConvexEnvelope-neohexane.dat (added)
	* tests/Tesselations/neohexane/2/NonConvexEnvelope-neohexane.dat (added)
	* tests/Tesselations/neohexane/25/NonConvexEnvelope-neohexane.dat (added)
	* tests/Tesselations/neohexane/3.5/NonConvexEnvelope-neohexane.dat (added)
	* tests/Tesselations/neohexane/3/NonConvexEnvelope-neohexane.dat (added)
	* tests/Tesselations/neohexane/4/NonConvexEnvelope-neohexane.dat (added)
	* tests/Tesselations/neohexane/NonConvexEnvelope-neohexane.dat (deleted)
	* tests/Tesselations/proline.test (modified)
	* tests/Tesselations/proline/1.5/NonConvexEnvelope-proline.dat (added)
	* tests/Tesselations/proline/2.5/NonConvexEnvelope-proline.dat (added)
	* tests/Tesselations/proline/2/NonConvexEnvelope-proline.dat (added)
	* tests/Tesselations/proline/25/NonConvexEnvelope-proline.dat (added)
	* tests/Tesselations/proline/3.5/NonConvexEnvelope-proline.dat (added)
	* tests/Tesselations/proline/3/NonConvexEnvelope-proline.dat (added)
	* tests/Tesselations/proline/4/NonConvexEnvelope-proline.dat (added)
	* tests/Tesselations/proline/NonConvexEnvelope-proline.dat (deleted)
	* tests/Tesselations/putrescine.test (modified)
	* tests/Tesselations/putrescine/1.5/NonConvexEnvelope-putrescine.dat (added)
	* tests/Tesselations/putrescine/2.5/NonConvexEnvelope-putrescine.dat (added)
	* tests/Tesselations/putrescine/2/NonConvexEnvelope-putrescine.dat (added)
	* tests/Tesselations/putrescine/25/NonConvexEnvelope-putrescine.dat (added)
	* tests/Tesselations/putrescine/3.5/NonConvexEnvelope-putrescine.dat (added)
	* tests/Tesselations/putrescine/3/NonConvexEnvelope-putrescine.dat (added)
	* tests/Tesselations/putrescine/4/NonConvexEnvelope-putrescine.dat (added)
	* tests/Tesselations/putrescine/NonConvexEnvelope-putrescine.dat (deleted)
	* tests/Tesselations/round_cluster.test (deleted)
	* tests/Tesselations/round_cluster/NonConvexEnvelope-round_cluster.dat (deleted)
	* tests/Tesselations/round_cluster/round_cluster.dbond (deleted)
	* tests/Tesselations/round_cluster/round_cluster.xyz (deleted)
	* tests/Tesselations/tartaric_acid.test (modified)
	* tests/Tesselations/tartaric_acid/1.5/NonConvexEnvelope-tartaric_acid.dat (added)
	* tests/Tesselations/tartaric_acid/2.5/NonConvexEnvelope-tartaric_acid.dat (added)
	* tests/Tesselations/tartaric_acid/2/NonConvexEnvelope-tartaric_acid.dat (added)
	* tests/Tesselations/tartaric_acid/25/NonConvexEnvelope-tartaric_acid.dat (added)
	* tests/Tesselations/tartaric_acid/3.5/NonConvexEnvelope-tartaric_acid.dat (added)
	* tests/Tesselations/tartaric_acid/3/NonConvexEnvelope-tartaric_acid.dat (added)
	* tests/Tesselations/tartaric_acid/4/NonConvexEnvelope-tartaric_acid.dat (added)
	* tests/Tesselations/tartaric_acid/NonConvexEnvelope-tartaric_acid.dat (deleted)

	Change of the Tesselation testsuite.

	- tests C16_0Torus, cluster, ...


Sun, 02 May 2010 16:47:18 GMT Saskia Metzler <metzler@…> [b8d4a3]
	* src/Parser/TremoloParser.cpp (modified)
	* src/Parser/TremoloParser.hpp (modified)
	* src/atom_bondedparticle.cpp (modified)
	* src/atom_bondedparticle.hpp (modified)
	* src/atom_particleinfo.cpp (modified)
	* src/bond.cpp (modified)
	* src/tesselation.cpp (modified)
	* src/unittests/ParserUnitTest.cpp (modified)
	* src/unittests/ParserUnitTest.hpp (modified)
	* src/unittests/SingletonTest.cpp (modified)

	Tremolo format parser


Fri, 30 Apr 2010 14:01:28 GMT Tillmann Crueger <crueger@…> [6f646d]
	* src/Line.cpp (added)
	* src/Line.hpp (added)
	* src/Makefile.am (modified)

	Added a line class that represents one dimensional subspaces


Fri, 30 Apr 2010 13:33:12 GMT Tillmann Crueger <crueger@…> [fa5a6a]
	* src/Plane.cpp (modified)
	* src/Plane.hpp (modified)
	* src/unittests/Makefile.am (modified)
	* src/unittests/PlaneUnittest.cpp (added)
	* src/unittests/PlaneUnittest.hpp (added)
	* src/vector.cpp (modified)
	* src/vector.hpp (modified)
	* src/vector_ops.cpp (modified)

	Added unittests for planes


Fri, 30 Apr 2010 10:07:23 GMT Tillmann Crueger <crueger@…> [1513a74]
	* src/Makefile.am (modified)
	* src/analysis_correlation.cpp (modified)
	* src/atom.cpp (modified)
	* src/atom_trajectoryparticle.cpp (modified)
	* src/bond.cpp (modified)
	* src/molecule_dynamics.cpp (modified)
	* src/moleculelist.cpp (modified)
	* src/tesselation.cpp (modified)
	* src/tesselationhelpers.cpp (modified)
	* src/triangleintersectionlist.cpp (modified)
	* src/unittests/vectorunittest.cpp (modified)
	* src/vector.cpp (modified)
	* src/vector.hpp (modified)

	Declared the Vector class as single point spaces


Fri, 30 Apr 2010 09:53:16 GMT Tillmann Crueger <crueger@…> [005e18]
	* src/Plane.cpp (modified)
	* src/Plane.hpp (modified)
	* src/Space.cpp (modified)
	* src/Space.hpp (modified)
	* src/vector.cpp (modified)
	* src/vector.hpp (modified)

	Added const correctness to plane class and simplified interface


Fri, 30 Apr 2010 09:35:01 GMT Tillmann Crueger <crueger@…> [0e01b4]
	* src/Plane.cpp (modified)

	FIX: small bug in the Plane::isContained() method


Fri, 30 Apr 2010 09:32:59 GMT Tillmann Crueger <crueger@…> [2cbe97]
	* src/Plane.cpp (modified)
	* src/Plane.hpp (modified)

	Added exception specifiers to plane class


Fri, 30 Apr 2010 09:23:37 GMT Tillmann Crueger <crueger@…> [3cdd16]
	* src/Exceptions/LinearDependenceException.cpp (modified)
	* src/Exceptions/LinearDependenceException.hpp (modified)
	* src/Exceptions/MathException.cpp (added)
	* src/Exceptions/MathException.hpp (added)
	* src/Exceptions/ZeroVectorException.cpp (added)
	* src/Exceptions/ZeroVectorException.hpp (added)
	* src/Makefile.am (modified)
	* src/Plane.cpp (modified)

	Added more Exceptions to the project to signal differen Math erorrs


Fri, 30 Apr 2010 09:03:57 GMT Tillmann Crueger <crueger@…> [2247a9]
	* src/Makefile.am (modified)
	* src/Plane.cpp (modified)
	* src/Plane.hpp (modified)
	* src/Space.cpp (added)
	* src/Space.hpp (added)

	Added a class Space to represent general subspaces of R^3 (planes and ...


Thu, 29 Apr 2010 21:25:44 GMT Frederik Heber <heber@…> [cdf8fb]
	* src/Helpers/MemDebug.cpp (modified)

	Merge branch 'FixMemDebug_strncpy' into StructureRefactoring


Thu, 29 Apr 2010 21:25:09 GMT Frederik Heber <heber@…> [28c351]
	* src/Helpers/MemDebug.cpp (modified)

	FIX: strncpy was lacking cstring include.


Thu, 29 Apr 2010 16:11:43 GMT Tillmann Crueger <crueger@…> [c61c87]
	* src/Plane.cpp (modified)
	* src/Plane.hpp (modified)

	Added a method that allows construction of three arbitrary points on ...


Thu, 29 Apr 2010 16:03:30 GMT Tillmann Crueger <crueger@…> [1829c4]
	* src/Plane.cpp (modified)
	* src/unittests/vectorunittest.cpp (modified)
	* src/unittests/vectorunittest.hpp (modified)
	* src/vector.cpp (modified)

	FIX: Bug that caused memory corruption in ...


Thu, 29 Apr 2010 15:30:55 GMT Tillmann Crueger <crueger@…> [1f7864]
	* src/Helpers/MemDebug.cpp (modified)

	FIX: Stupid bug in the Debug-new that destroyed some memory


Thu, 29 Apr 2010 14:38:29 GMT Tillmann Crueger <crueger@…> [d79639]
	* src/Helpers/MemDebug.cpp (modified)
	* src/Helpers/MemDebug.hpp (modified)

	Improved comments for the memory tracker


Thu, 29 Apr 2010 13:55:21 GMT Tillmann Crueger <crueger@…> [8cbb97]
	* src/Exceptions/CustomException.cpp (added)
	* src/Exceptions/CustomException.hpp (added)
	* src/Exceptions/LinearDependenceException.cpp (added)
	* src/Exceptions/LinearDependenceException.hpp (added)
	* src/Helpers/fast_functions.hpp (added)
	* src/Legacy/oldmenu.cpp (modified)
	* src/Makefile.am (modified)
	* src/Plane.cpp (added)
	* src/Plane.hpp (added)
	* src/UIElements/TextDialog.cpp (modified)
	* src/analysis_bonds.cpp (modified)
	* src/analysis_correlation.cpp (modified)
	* src/atom.cpp (modified)
	* src/atom_trajectoryparticle.cpp (modified)
	* src/bond.cpp (modified)
	* src/boundary.cpp (modified)
	* src/builder.cpp (modified)
	* src/config.cpp (modified)
	* src/ellipsoid.cpp (modified)
	* src/gslmatrix.cpp (modified)
	* src/helpers.cpp (modified)
	* src/helpers.hpp (modified)
	* src/leastsquaremin.cpp (modified)
	* src/linearsystemofequations.cpp (modified)
	* src/linkedcell.cpp (modified)
	* src/molecule.cpp (modified)
	* src/molecule.hpp (modified)
	* src/molecule_dynamics.cpp (modified)
	* src/molecule_fragmentation.cpp (modified)
	* src/molecule_geometry.cpp (modified)
	* src/molecule_graph.cpp (modified)
	* src/molecule_template.hpp (modified)
	* src/moleculelist.cpp (modified)
	* src/tesselation.cpp (modified)
	* src/tesselationhelpers.cpp (modified)
	* src/test/ActOnAlltest.hpp (modified)
	* src/triangleintersectionlist.cpp (modified)
	* src/unittests/ActOnAllUnitTest.cpp (modified)
	* src/unittests/ActOnAllUnitTest.hpp (modified)
	* src/unittests/AnalysisCorrelationToPointUnitTest.cpp (modified)
	* src/unittests/AnalysisCorrelationToSurfaceUnitTest.cpp (modified)
	* src/unittests/AnalysisCorrelationToSurfaceUnitTest.hpp (modified)
	* src/unittests/AnalysisPairCorrelationUnitTest.cpp (modified)
	* src/unittests/CountBondsUnitTest.cpp (modified)
	* src/unittests/LinkedCellUnitTest.cpp (modified)
	* src/unittests/analysisbondsunittest.cpp (modified)
	* src/unittests/bondgraphunittest.cpp (modified)
	* src/unittests/listofbondsunittest.cpp (modified)
	* src/unittests/tesselation_boundarytriangleunittest.cpp (modified)
	* src/unittests/vectorunittest.cpp (modified)
	* src/vector.cpp (modified)
	* src/vector.hpp (modified)
	* src/vector_ops.cpp (added)
	* src/vector_ops.hpp (added)

	Merge branch 'VectorRefactoring' into StructureRefactoring
 ...


Wed, 28 Apr 2010 14:52:56 GMT Tillmann Crueger <crueger@…> [753f02]
	* src/Helpers/fast_functions.hpp (modified)
	* src/Makefile.am (modified)
	* src/SingleVector.cpp (deleted)
	* src/SingleVector.hpp (deleted)
	* src/vector.cpp (modified)
	* src/vector.hpp (modified)

	Removed Algebraic Hierachy from vector.


Wed, 28 Apr 2010 13:31:57 GMT Tillmann Crueger <crueger@…> [632bc3]
	* src/Actions/Action.cpp (modified)
	* src/Actions/ActionHistory.cpp (modified)
	* src/Helpers/MemDebug.cpp (added)
	* src/Helpers/MemDebug.hpp (added)
	* src/Makefile.am (modified)
	* src/builder.cpp (modified)

	Added a small memory tracker to the programm.


Tue, 27 Apr 2010 14:25:42 GMT Frederik Heber <heber@…> [5f612ee]
	* src/Legacy/oldmenu.cpp (modified)
	* src/Makefile.am (modified)
	* src/World.cpp (modified)
	* src/World.hpp (modified)
	* src/analysis_bonds.cpp (modified)
	* src/analysis_bonds.hpp (modified)
	* src/analysis_correlation.cpp (modified)
	* src/analysis_correlation.hpp (modified)
	* src/analyzer.cpp (modified)
	* src/atom.cpp (modified)
	* src/atom_bondedparticle.cpp (modified)
	* src/atom_graphnode.cpp (modified)
	* src/atom_particleinfo.cpp (modified)
	* src/atom_trajectoryparticle.cpp (modified)
	* src/bond.cpp (modified)
	* src/bondgraph.cpp (modified)
	* src/bondgraph.hpp (modified)
	* src/boundary.cpp (modified)
	* src/boundary.hpp (modified)
	* src/builder.cpp (modified)
	* src/config.cpp (modified)
	* src/datacreator.cpp (modified)
	* src/defs.hpp (modified)
	* src/ellipsoid.cpp (modified)
	* src/errorlogger.cpp (modified)
	* src/graph.cpp (modified)
	* src/gslvector.cpp (modified)
	* src/gslvector.hpp (modified)
	* src/helpers.cpp (modified)
	* src/helpers.hpp (modified)
	* src/info.cpp (modified)
	* src/joiner.cpp (modified)
	* src/linkedcell.cpp (modified)
	* src/linkedcell.hpp (modified)
	* src/log.cpp (modified)
	* src/log.hpp (modified)
	* src/memoryusageobserver.cpp (modified)
	* src/molecule.cpp (modified)
	* src/molecule.hpp (modified)
	* src/molecule_dynamics.cpp (modified)
	* src/molecule_fragmentation.cpp (modified)
	* src/molecule_geometry.cpp (modified)
	* src/molecule_graph.cpp (modified)
	* src/moleculelist.cpp (modified)
	* src/parser.cpp (modified)
	* src/periodentafel.cpp (modified)
	* src/stackclass.hpp (modified)
	* src/tesselation.cpp (modified)
	* src/tesselation.hpp (modified)
	* src/tesselationhelpers.cpp (modified)
	* src/triangleintersectionlist.cpp (added)
	* src/triangleintersectionlist.hpp (added)
	* src/unittests/AnalysisCorrelationToPointUnitTest.cpp (modified)
	* src/unittests/AnalysisCorrelationToSurfaceUnitTest.cpp (modified)
	* src/unittests/AnalysisCorrelationToSurfaceUnitTest.hpp (modified)
	* src/unittests/CountBondsUnitTest.cpp (added)
	* src/unittests/CountBondsUnitTest.hpp (added)
	* src/unittests/LinkedCellUnitTest.cpp (added)
	* src/unittests/LinkedCellUnitTest.hpp (added)
	* src/unittests/Makefile.am (modified)
	* src/unittests/bondgraphunittest.cpp (modified)
	* src/unittests/bondgraphunittest.hpp (modified)
	* src/unittests/gslvectorunittest.cpp (modified)
	* src/unittests/gslvectorunittest.hpp (modified)
	* src/unittests/logunittest.cpp (modified)
	* src/unittests/memoryallocatorunittest.cpp (modified)
	* src/unittests/tesselation_boundarytriangleunittest.hpp (modified)
	* src/unittests/tesselation_insideoutsideunittest.cpp (modified)
	* src/unittests/tesselation_insideoutsideunittest.hpp (modified)
	* src/unittests/tesselationunittest.cpp (modified)
	* src/unittests/tesselationunittest.hpp (modified)
	* src/vector.cpp (modified)
	* src/vector.hpp (modified)
	* src/verbose.cpp (modified)
	* src/verbose.hpp (modified)
	* tests/Tesselations/1_2-dimethylbenzene/tecplot.phy (deleted)
	* tests/Tesselations/defs.in (modified)
	* tests/regression/Tesselation/3/post/NonConvexEnvelope.dat (modified)
	* tests/regression/Tesselation/3/post/NonConvexEnvelope.r3d (modified)

	Merge branch 'Analysis_PairCorrelation' into StructureRefactoring
 ...


Mon, 26 Apr 2010 18:19:38 GMT Frederik Heber <heber@…> [c695c9]
	* tests/Tesselations/1_2-dimethylbenzene/tecplot.phy (deleted)
	* tests/Tesselations/defs.in (modified)

	Merge branch 'FixMolecuilderTestsTesselations_defs' into ...


Mon, 26 Apr 2010 18:19:03 GMT Frederik Heber <heber@…> [491876]
	* tests/Tesselations/1_2-dimethylbenzene/tecplot.phy (deleted)
	* tests/Tesselations/defs.in (modified)

	FIX: Tesselation does not work in first run due to still present ...


Mon, 26 Apr 2010 17:25:44 GMT Frederik Heber <heber@…> [260c29]
	* tests/regression/Tesselation/3/post/NonConvexEnvelope.dat (modified)
	* tests/regression/Tesselation/3/post/NonConvexEnvelope.r3d (modified)

	Regression test of Tesselation for test case 15 "Big non-convex ...


Mon, 26 Apr 2010 16:38:47 GMT Frederik Heber <heber@…> [d6c485]
	* src/World.cpp (modified)

	Merge branch 'FixWorld_wrongauthor' into Analysis_PairCorrelation


Mon, 26 Apr 2010 16:38:14 GMT Frederik Heber <heber@…> [70378e]
	* src/World.cpp (modified)

	FIX: Author of World.cpp has been wrongly set (by eclipse) to heber ...


Mon, 26 Apr 2010 16:35:42 GMT Frederik Heber <heber@…> [b8c9d8]
	* src/World.cpp (modified)

	Merge branch 'FixWorld_differentdefaultcell_size' into ...


Mon, 26 Apr 2010 16:34:22 GMT Frederik Heber <heber@…> [fd179f]
	* src/World.cpp (modified)

	FIX: cell_size in World has not been set to a default size, i.e. has ...


Mon, 26 Apr 2010 16:22:17 GMT Frederik Heber <heber@…> [6cd16b]
	* src/unittests/analysisbondsunittest.cpp (modified)

	Merge branch 'FixAnalysisBonds_carbonwrongZ' into ...


Mon, 26 Apr 2010 16:19:32 GMT Frederik Heber <heber@…> [6056f1]
	* src/unittests/analysisbondsunittest.cpp (modified)

	FIX: AnalysisBondsUnitTests has been broken due to Z of carbon same ...


Mon, 26 Apr 2010 16:13:02 GMT Frederik Heber <heber@…> [fe6c3e]
	* src/unittests/AnalysisCorrelationToPointUnitTest.cpp (modified)

	Merge branch 'FixAnalysisCorrelation_zeroinitallbins' into ...


Mon, 26 Apr 2010 16:11:23 GMT Frederik Heber <heber@…> [3d9df5]
	* src/unittests/AnalysisCorrelationToPointUnitTest.cpp (modified)

	FIX: AnalysisCorrelationToPointUnitTest has been broken due to init ...


Mon, 26 Apr 2010 16:04:41 GMT Frederik Heber <heber@…> [3b9e34]
	* src/unittests/AnalysisCorrelationToSurfaceUnitTest.cpp (modified)

	Merge branch 'FixAnalysisCorrelation_zeroinitallbins' into ...


Mon, 26 Apr 2010 16:00:24 GMT Frederik Heber <heber@…> [c6394d]
	* src/unittests/AnalysisCorrelationToSurfaceUnitTest.cpp (modified)

	FIX: AnalysisCorrelationToSurfaceUnitTest has been broken since ...


Mon, 26 Apr 2010 15:47:54 GMT Frederik Heber <heber@…> [ee7e25]
	* src/molecule_graph.cpp (modified)
	* src/unittests/bondgraphunittest.cpp (modified)
	* src/unittests/bondgraphunittest.hpp (modified)

	Merge branch 'FixBondGraphUnitTest_hydrogencarbon' into ...


Mon, 26 Apr 2010 15:42:45 GMT Frederik Heber <heber@…> [e5ad5c]
	* src/molecule_graph.cpp (modified)
	* src/unittests/bondgraphunittest.cpp (modified)
	* src/unittests/bondgraphunittest.hpp (modified)

	BUGFIX: BondGraphUnitTest was not working.

	Changes:
	 - atoms are ...


Mon, 26 Apr 2010 13:49:59 GMT Tillmann Crueger <crueger@…> [13d5a9]
	* src/Actions/small_actions.cpp (modified)
	* src/Helpers/Assert.cpp (modified)
	* src/Helpers/Assert.hpp (modified)

	Added macros that allow type safe casting using the Assert mechanism


Sun, 25 Apr 2010 13:36:17 GMT Tillmann Crueger <crueger@…> [8bb2fd]
	* src/Helpers/Assert.hpp (modified)

	FIX: Repaired some of the NDEBUG macros for ASSERT


Sun, 25 Apr 2010 13:16:09 GMT Tillmann Crueger <crueger@…> [8de8f7]
	* src/UIElements/TextDialog.cpp (modified)

	Made the input methods more robust to invalid inputs.


Sun, 25 Apr 2010 12:48:24 GMT Tillmann Crueger <crueger@…> [033a05]
	* src/Helpers/Assert.hpp (modified)
	* src/Patterns/Observer.cpp (modified)
	* src/Patterns/Observer.hpp (modified)
	* src/unittests/ObserverTest.cpp (modified)

	Small improvements to Observer code


Sat, 24 Apr 2010 15:27:00 GMT Tillmann Crueger <crueger@…> [ccacba]
	* src/Helpers/Assert.hpp (modified)
	* src/Patterns/Observer.cpp (modified)
	* src/Patterns/Observer.hpp (modified)
	* src/unittests/ObserverTest.cpp (modified)
	* src/unittests/ObserverTest.hpp (modified)

	Added methods for specialized Notifications from the Observer
	Framework


Fri, 23 Apr 2010 08:09:40 GMT Frederik Heber <heber@…> [b5c2d7]
	* src/boundary.cpp (modified)

	Don't exit when no starting triangle has been found.

	- The issue is ...


Thu, 22 Apr 2010 20:09:48 GMT Frederik Heber <heber@…> [b1a6d8]
	* src/tesselation.cpp (modified)

	BUGFIX in Tesselation::FindThirdPointForTesselation() - ThirdPoint of ...


Thu, 22 Apr 2010 15:47:22 GMT Frederik Heber <heber@…> [ce70970]
	* src/boundary.cpp (modified)
	* src/tesselation.cpp (modified)
	* src/tesselation.hpp (modified)

	FIX: Tesselation::FindStartingTriangle() returns false when no ...