# # MoleCuilder - creates and alters molecular systems # Copyright (C) 2017 Frederik Heber # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program. If not, see . # ### test vmg jobs # perform test with PoolWorkers using molecuilder_poolworker AT_SETUP([Integration - fragmentation plus automated fragment calculation with longrange]) AT_KEYWORDS([fragmentation automation server poolworker molecuilder_poolworker longrange]) # check that ports are unique over all tests such that they may run in parallel WORKERPORT=12030 CONTROLLERPORT=12031 WORKERLISTENPORT=12032 # start service in background ${AUTOTEST_PATH}/molecuilder_server --workerport $WORKERPORT --controllerport $CONTROLLERPORT & server_pid=$! AT_CHECK([sleep 2], 0, [ignore], [ignore], [kill $server_pid]) AT_CHECK([kill -s 0 $server_pid], 0, [ignore], [ignore], [kill $server_pid]) # enlist a worker to work on jobs ../../molecuilder_poolworker -v 5 --server 127.0.0.1:${WORKERPORT} --hostname 127.0.0.1 --listen $WORKERLISTENPORT & worker_script_pid=$! worker_pid=`ps -ef | grep molecuilder_poolworker | grep $worker_script_pid | awk '{print $2}'` AT_CHECK([sleep 2], 0, [ignore], [ignore], [kill $server_pid $worker_pid]) AT_CHECK([kill -s 0 $worker_pid], 0, [ignore], [ignore], [kill $server_pid $worker_pid]) # create jobs via molecuilder molfile="ethane.pdb" AT_CHECK([cp -f ${abs_top_srcdir}/tests/integration/pre/ethane.pdb $molfile], 0) AT_CHECK([chmod +rw $molfile], 0) AT_CHECK([../../molecuilder \ -i $molfile \ --bound-in-box "10,0,10,0,0,10" \ --set-boundary-conditions Wrap Wrap Wrap \ --select-all-atoms \ --update-molecules \ --set-parser-parameters mpqc \ --parser-parameters "theory=CLHF;basis=3-21G;" \ --fragment-molecule BondFragment \ --order 2 \ --grid-level 3 \ --fragment-automation \ --server-address 127.0.0.1 \ --server-port ${CONTROLLERPORT} \ --DoLongrange 1 \ --verbose 3 \ --analyse-fragment-results results.dat], 0, [stdout], [ignore], [kill $server_pid $worker_pid]) # send removeall to server such that all workers shutdown AT_CHECK([${AUTOTEST_PATH}/molecuilder_controller --server 127.0.0.1:$CONTROLLERPORT --command removeall], 0, [ignore], [ignore], [kill $server_pid $worker_pid]) # check that worker is truely down AT_CHECK([sleep 1], 0, [ignore], [ignore], [kill $worker_pid $server_pid]) AT_CHECK([kill $worker_pid], 1, [ignore], [ignore], [kill $server_pid]) # check number of done jobs AT_CHECK([fgrep "There are 3 fragments" stdout], 0, [ignore], [ignore], [kill $server_pid]) AT_CHECK([fgrep "There are 1 molecules to consider" stdout], 0, [ignore], [ignore], [kill $server_pid]) AT_CHECK([fgrep "8 atoms selected." stdout], 0, [ignore], [ignore], [kill $server_pid]) AT_CHECK([tail -n 2 BondFragment_LongRangeEnergy.dat | head -n 1 | awk 'function abs(v) {return v < 0.0 ? -v : v}{if (abs(($8+9.740433541)/-9.740433541) > 1e-6) exit 1}'], 0, [ignore], [ignore], [kill $server_pid]) AT_CHECK([tail -n 1 BondFragment_LongRangeEnergy.dat | awk 'function abs(v) {return v < 0.0 ? -v : v}{if (abs($8+3.552713679e-15) > 1e-10) exit 1}'], 0, [ignore], [ignore], [kill $server_pid]) # shutdown controller socket AT_CHECK([${AUTOTEST_PATH}/molecuilder_controller --server 127.0.0.1:$CONTROLLERPORT --command shutdown], 0, [stdout], [ignore], [kill $server_pid]) # check that server is truely down AT_CHECK([sleep 1], 0, [ignore], [ignore], [kill $server_pid]) AT_CHECK([kill $server_pid], 1, [ignore], [ignore]) AT_CLEANUP