# this includes source files that need to be present at multiple points
HELPERSOURCE =  Helpers/Assert.cpp \
		 		Helpers/MemDebug.cpp
		        
ATOMSOURCE = atom.cpp atom_atominfo.cpp atom_bondedparticle.cpp atom_bondedparticleinfo.cpp atom_graphnode.cpp atom_graphnodeinfo.cpp atom_particleinfo.cpp atom_trajectoryparticle.cpp atom_trajectoryparticleinfo.cpp
ATOMHEADER = atom.hpp atom_atominfo.hpp atom_bondedparticle.hpp atom_bondedparticleinfo.hpp atom_graphnode.hpp atom_graphnodeinfo.hpp atom_particleinfo.hpp atom_trajectoryparticle.hpp atom_trajectoryparticleinfo.hpp

LINALGSOURCE = ${HELPERSOURCE} \
               gslmatrix.cpp \
			   gslvector.cpp \
			   linearsystemofequations.cpp \
			   vector.cpp
			   
LINALGHEADER = gslmatrix.hpp \
			   gslvector.hpp \
			   linearsystemofequations.hpp \
			   vector.hpp
			   

ANALYSISSOURCE = analysis_bonds.cpp analysis_correlation.cpp
ANALYSISHEADER = analysis_bonds.hpp analysis_correlation.hpp

ACTIONSSOURCE = Actions/Action.cpp \
				Actions/ActionHistory.cpp \
				Actions/ActionRegistry.cpp \
				Actions/ActionSequence.cpp \
				Actions/ErrorAction.cpp \
				Actions/MakroAction.cpp \
				Actions/ManipulateAtomsProcess.cpp \
				Actions/MethodAction.cpp \
                Actions/Process.cpp \
                Actions/small_actions.cpp
                
                 
ACTIONSHEADER = Actions/Action.hpp \
				Actions/ActionHistory.hpp \
				Actions/ActionRegistry.hpp \
				Actions/ActionSequence.hpp \
 			    Actions/Calculation.hpp \
 			    Actions/Calculation_impl.hpp \
 			    Actions/ErrorAction.hpp \
 			    Actions/MakroAction.hpp \
 			    Actions/ManipulateAtomsProcess.hpp \
 			    Actions/MethodAction.hpp \
 			    Actions/Process.hpp \
 			    Actions/small_actions.hpp
 			    
 			    

PATTERNSOURCE = Patterns/Observer.cpp
PATTERNHEADER = Patterns/Cacheable.hpp \
				Patterns/Observer.hpp \
                Patterns/Singleton.hpp

VIEWSOURCE = Views/View.cpp Views/StringView.cpp Views/MethodStringView.cpp Views/StreamStringView.cpp
VIEWHEADER = Views/View.hpp Views/StringView.hpp Views/MethodStringView.hpp Views/StreamStringView.hpp

MENUSOURCE = Menu/Menu.cpp Menu/TextMenu.cpp Menu/MenuItem.cpp Menu/SubMenuItem.cpp Menu/ActionMenuItem.cpp Menu/SeperatorItem.cpp Menu/DisplayMenuItem.cpp
MENUHEADER = Menu/Menu.hpp Menu/TextMenu.hpp Menu/MenuItem.hpp Menu/SubMenuItem.hpp Menu/ActionMenuItem.hpp Menu/SeperatorItem.hpp Menu/DisplayMenuItem.hpp

UISOURCE = ${ACTIONSSOURCE} ${VIEWSOURCE} ${MENUSOURCE} UIElements/UIFactory.cpp UIElements/TextUIFactory.cpp UIElements/MainWindow.cpp UIElements/TextWindow.cpp UIElements/TextStatusIndicator.cpp UIElements/Dialog.cpp UIElements/TextDialog.cpp
UIHEADER = ${ACTIONSHEADER} ${VIEWHEADER} ${MENUHEADER} UIElements/UIFactory.hpp UIElements/TextUIFactory.hpp UIElements/MainWindow.hpp UIElements/TextWindow.hpp UIElements/TextStatusIndicator.hpp UIElements/Dialog.hpp UIElements/TextDialog.hpp

# all these files are only used for legacy reasons while the transition is in progress
# they are only needed to keep the program usable at any point of the transition and will be 
# deleted once everything is fully refactored
LEGACYSOURCE = Legacy/oldmenu.cpp 
LEGACYHEADER = Legacy/oldmenu.hpp

DESCRIPTORSOURCE = Descriptors/AtomDescriptor.cpp \
				   Descriptors/AtomIdDescriptor.cpp \
				   Descriptors/AtomTypeDescriptor.cpp \
				   Descriptors/MoleculeDescriptor.cpp \
				   Descriptors/MoleculeIdDescriptor.cpp 
				   
				   
DESCRIPTORHEADER = Descriptors/AtomDescriptor.hpp \
				   Descriptors/AtomIdDescriptor.hpp \
				   Descriptors/AtomTypeDescriptor.hpp \
				   Descriptors/MoleculeDescriptor.hpp \
				   Descriptors/MoleculeIdDescriptor.hpp
				   


EXCEPTIONSOURCE = Exceptions/CustomException.cpp \
				  Exceptions/LinearDependenceException.cpp
				  
EXCEPTIONHEADER = Exceptions/CustomException.hpp \
				  Exceptions/LinearDependenceException.hpp

SOURCE = ${ANALYSISSOURCE} \
		 ${ATOMSOURCE} \
		 ${PATTERNSOURCE} \
		 ${UISOURCE} \
		 ${DESCRIPTORSOURCE} \
		 ${HELPERSOURCE} \
		 ${LEGACYSOURCE} \
		 ${EXCEPTIONSOURCE} \
		 bond.cpp \
		 bondgraph.cpp \
		 boundary.cpp \
		 config.cpp \
		 element.cpp \
		 ellipsoid.cpp \
		 errorlogger.cpp \
		 graph.cpp \
		 helpers.cpp \
		 info.cpp \
		 leastsquaremin.cpp \
		 linkedcell.cpp \
		 lists.cpp \
		 log.cpp \
		 logger.cpp \
		 memoryusageobserver.cpp \
		 moleculelist.cpp \
		 molecule.cpp \
		 molecule_dynamics.cpp \
		 molecule_fragmentation.cpp \
		 molecule_geometry.cpp \
		 molecule_graph.cpp \
		 molecule_pointcloud.cpp \
		 parser.cpp \
		 periodentafel.cpp \
		 Plane.cpp \
		 tesselation.cpp \
		 tesselationhelpers.cpp \
		 triangleintersectionlist.cpp \
		 verbose.cpp \
		 vector_ops.cpp \
		 World.cpp

HEADER = \
	  ${ANALYSISHEADER} \
	  ${ATOMHEADER} \
	  ${PATTERNHEADER} \
	  ${UIHEADER} \
	  ${DESCRIPTORHEADER} \
	  ${EXCEPTIONHEADER} \
	  ${LEGACYHEADER} \
	  bond.hpp \
	  bondgraph.hpp \
	  boundary.hpp \
	  config.hpp \
	  defs.hpp \
	  element.hpp \
	  ellipsoid.hpp \
	  errorlogger.hpp \
	  graph.hpp \
	  helpers.hpp \
	  info.hpp \
	  leastsquaremin.hpp \
	  linkedcell.hpp \
	  lists.hpp \
	  log.hpp \
	  logger.hpp \
	  memoryallocator.hpp \
	  memoryusageobserver.hpp \
	  molecule.hpp \
	  molecule_template.hpp \
	  parser.hpp \
	  periodentafel.hpp \
	  Plane.hpp \
	  stackclass.hpp \
	  tesselation.hpp \
	  tesselationhelpers.hpp \
	  triangleintersectionlist.hpp \
	  verbose.hpp \
	  vector_ops.hpp \
	  World.hpp 

BOOST_LIB = $(BOOST_LDFLAGS) $(BOOST_MPL_LIB)
INCLUDES = -I$(top_srcdir)/src/unittests

noinst_LIBRARIES = libmolecuilder.a libgslwrapper.a
bin_PROGRAMS = molecuilder joiner analyzer
molecuilderdir = ${bindir}
libmolecuilder_a_SOURCES = ${SOURCE} ${HEADER}
libgslwrapper_a_SOURCES = ${LINALGSOURCE} ${LINALGHEADER}
molecuilder_DATA = elements.db valence.db orbitals.db Hbonddistance.db Hbondangle.db
molecuilder_LDFLAGS = $(BOOST_LDFLAGS)
molecuilder_SOURCES = builder.cpp
molecuilder_LDADD = libmolecuilder.a libgslwrapper.a $(BOOST_LIB) ${BOOST_THREAD_LIB}
joiner_SOURCES = joiner.cpp datacreator.cpp parser.cpp datacreator.hpp helpers.hpp parser.hpp periodentafel.hpp
joiner_LDADD = libmolecuilder.a $(BOOST_LIB) ${BOOST_THREAD_LIB}
analyzer_SOURCES = analyzer.cpp datacreator.cpp parser.cpp helpers.hpp periodentafel.hpp parser.hpp datacreator.hpp 
analyzer_LDADD = libmolecuilder.a $(BOOST_LIB) ${BOOST_THREAD_LIB}

#EXTRA_DIST = ${molecuilder_DATA}

FORCE:
$(srcdir)/.git-version: FORCE
	@if (test -d $(top_srcdir)/../.git && cd $(srcdir) && git describe HEAD) > .git-version-t 2>/dev/null \
	  && ! diff .git-version-t $(srcdir)/.git-version >/dev/null 2>&1; then \
	  mv -f .git-version-t $(srcdir)/.git-version; \
	else \
	  rm -f .git-version-t; \
	fi

EXTRA_DIST = $(srcdir)/.git-version

$(srcdir)/version.c: $(srcdir)/.git-version
	echo "const char *ESPACKVersion = \"$(PACKAGE_NAME) -- git version: "`cat $(srcdir)/.git-version`"\";" > $@

molecuilder_SOURCES += $(srcdir)/version.c