# PLEASE adhere to the alphabetical ordering in this Makefile!
# Also indentation by a single tab

FRAGMENTATIONSOURCE = \
	Fragmentation/Exporters/ExportGraph_ToAtomFragments.cpp \
	Fragmentation/Exporters/ExportGraph_ToFiles.cpp \
	Fragmentation/Exporters/ExportGraph_ToJobs.cpp \
	Fragmentation/Exporters/ExportGraph.cpp \
	Fragmentation/Exporters/HydrogenPool.cpp \
	Fragmentation/Exporters/SaturatedBond.cpp \
	Fragmentation/Exporters/SaturatedFragment.cpp \
	Fragmentation/Exporters/SaturationDistanceMaximizer.cpp \
	Fragmentation/Exporters/SphericalPointDistribution.cpp \
	Fragmentation/Exporters/SphericalPointDistribution_getConnections.cpp \
	Fragmentation/Exporters/SphericalPointDistribution_getPoints.cpp \
	Fragmentation/Homology/AtomFragmentsMap.cpp \
	Fragmentation/Homology/FragmentEdge.cpp \
	Fragmentation/Homology/FragmentNode.cpp \
	Fragmentation/Homology/HomologyContainer.cpp \
	Fragmentation/Homology/HomologyGraph.cpp \
	Fragmentation/AdaptivityMap.cpp \
	Fragmentation/BondsPerShortestPath.cpp \
	Fragmentation/EnergyMatrix.cpp \
	Fragmentation/ForceMatrix.cpp \
	Fragmentation/Fragmentation.cpp \
	Fragmentation/fragmentation_helpers.cpp \
	Fragmentation/Graph.cpp \
	Fragmentation/helpers.cpp \
	Fragmentation/HessianMatrix.cpp \
	Fragmentation/Interfragmenter.cpp \
	Fragmentation/KeySet.cpp \
	Fragmentation/MatrixContainer.cpp \
	Fragmentation/PowerSetGenerator.cpp \
	Fragmentation/SortIndex.cpp \
	Fragmentation/UniqueFragments.cpp

FRAGMENTATIONHEADER = \
	Fragmentation/Exporters/ExportGraph_ToAtomFragments.hpp \
	Fragmentation/Exporters/ExportGraph_ToFiles.hpp \
	Fragmentation/Exporters/ExportGraph_ToJobs.hpp \
	Fragmentation/Exporters/ExportGraph.hpp \
	Fragmentation/Exporters/HydrogenPool.hpp \
	Fragmentation/Exporters/SaturatedBond.hpp \
	Fragmentation/Exporters/SaturatedFragment.hpp \
	Fragmentation/Exporters/SaturationDistanceMaximizer.hpp \
	Fragmentation/Exporters/SphericalPointDistribution.hpp \
	Fragmentation/Homology/AtomFragmentsMap.hpp \
	Fragmentation/Homology/FragmentEdge.hpp \
	Fragmentation/Homology/FragmentNode.hpp \
	Fragmentation/Homology/HomologyContainer.hpp \
	Fragmentation/Homology/HomologyGraph.hpp \
	Fragmentation/AdaptivityMap.hpp \
	Fragmentation/AtomMask.hpp \
	Fragmentation/BondsPerShortestPath.hpp \
	Fragmentation/defs.hpp \
	Fragmentation/EdgesPerFragment.hpp \
	Fragmentation/EnergyMatrix.hpp \
	Fragmentation/ForceMatrix.hpp \
	Fragmentation/Fragmentation.hpp \
	Fragmentation/fragmentation_helpers.hpp \
	Fragmentation/Graph.hpp \
	Fragmentation/helpers.cpp \
	Fragmentation/helpers.hpp \
	Fragmentation/HessianMatrix.hpp \
	Fragmentation/HydrogenSaturation_enum.hpp \
	Fragmentation/Interfragmenter.hpp \
	Fragmentation/KeySet.hpp \
	Fragmentation/MatrixContainer.hpp \
	Fragmentation/Mask.hpp \
	Fragmentation/MoleculeMask.hpp \
	Fragmentation/PowerSetGenerator.hpp \
	Fragmentation/SortIndex.hpp \
	Fragmentation/UniqueFragments.hpp

lib_LTLIBRARIES += \
	libMolecuilderFragmentation_KeysetsContainer.la
noinst_LTLIBRARIES += \
	libMolecuilderFragmentation.la \
	libMolecuilderFragmentation_getFromKeyset.la \
	libMolecuilderFragmentation_getFromKeysetStub.la
libMolecuilderFragmentation_la_includedir = $(includedir)/MoleCuilder/
libMolecuilderFragmentation_KeysetsContainer_la_includedir = $(includedir)/MoleCuilder/
libMolecuilderFragmentation_getFromKeyset_la_includedir = $(includedir)/MoleCuilder/
libMolecuilderFragmentation_getFromKeysetStub_la_includedir = $(includedir)/MoleCuilder/
libMolecuilderFragmentation_la_CPPFLAGS = $(AM_CPPFLAGS)
libMolecuilderFragmentation_la_LDFLAGS = $(AM_LDFLAGS)
libMolecuilderFragmentation_KeysetsContainer_la_LIBADD = \
	$(CodePatterns_LIBS)
libMolecuilderFragmentation_la_LIBADD =
if CONDJOBMARKET
libMolecuilderFragmentation_la_CPPFLAGS += ${JobMarket_CFLAGS}
libMolecuilderFragmentation_la_LDFLAGS += $(JobMarket_LDFLAGS)
libMolecuilderFragmentation_la_LIBADD += $(JobMarket_LIBS)
endif

nobase_libMolecuilderFragmentation_la_include_HEADERS = ${FRAGMENTATIONHEADER}
nobase_libMolecuilderFragmentation_KeysetsContainer_la_include_HEADERS = \
	Fragmentation/KeySetsContainer.hpp \
	Fragmentation/parseKeySetFile.hpp

## Define the source file list for the "libexample-@MOLECUILDER_API_VERSION@.la"
## target.  Note that @MOLECUILDER_API_VERSION@ is not interpreted by Automake and
## will therefore be treated as if it were literally part of the target name,
## and the variable name derived from that.
## The file extension .cc is recognized by Automake, and makes it produce
## rules which invoke the C++ compiler to produce a libtool object file (.lo)
## from each source file.  Note that it is not necessary to list header files
## which are already listed elsewhere in a _HEADERS variable assignment.
libMolecuilderFragmentation_la_SOURCES = ${FRAGMENTATIONSOURCE}
libMolecuilderFragmentation_KeysetsContainer_la_SOURCES = \
	Fragmentation/KeySetsContainer.cpp \
	Fragmentation/parseKeySetFile.cpp
libMolecuilderFragmentation_getFromKeyset_la_SOURCES = \
	Fragmentation/Homology/HomologyGraph_getFromKeyset.cpp
libMolecuilderFragmentation_getFromKeysetStub_la_SOURCES = \
	Fragmentation/Homology/HomologyGraph_getFromKeysetStub.cpp

## Instruct libtool to include ABI version information in the generated shared
## library file (.so).  The library ABI version is defined in configure.ac, so
## that all version information is kept in one place.
libMolecuilderFragmentation_KeysetsContainer_la_LDFLAGS = $(AM_LDFLAGS) -version-info $(MOLECUILDER_SO_VERSION)

## The generated configuration header is installed in its own subdirectory of
## $(libdir).  The reason for this is that the configuration information put
## into this header file describes the target platform the installed library
## has been built for.  Thus the file must not be installed into a location
## intended for architecture-independent files, as defined by the Filesystem
## Hierarchy Standard (FHS).
## The nodist_ prefix instructs Automake to not generate rules for including
## the listed files in the distribution on 'make dist'.  Files that are listed
## in _HEADERS variables are normally included in the distribution, but the
## configuration header file is generated at configure time and should not be
## shipped with the source tarball.
libMolecuilderFragmentation_KeysetsContainer_libincludedir = $(libdir)/MoleCuilder/include
#nodist_libMolecuilderFragmentation_KeysetsContainer_libinclude_HEADERS = $(top_builddir)/libmolecuilder_config.h