#ACLOCAL_AMFLAGS = -I m4
SUBDIRS = doc tests

bin_PROGRAMS = \
	average \
	CreateGaAs \
	CreateH2 \
	diagonalize \
	GetPdb \
	NanoCreator \
	ReadSrcIon \
	stochastik \
	VibrAlyzer	

GetPdb_SOURCES = GetPdb.c mergesort.c mergesort.h
diagonalize_SOURCES = diagonalize.c
stochastik_SOURCES = stochastik.cpp
NanoCreator_SOURCES = NanoCreator.c NanoCreator.h
average_SOURCES = average.cpp
VibrAlyzer_SOURCES = VibrAlyzer.c

scripts = \
	average_result.sh \
	CreateFromXYZ.sh \
	config2xyz.sh \
	convert2old.sh \
	convertpdb.sh \
	dynamicANOVA.sh	\
	gather_result.sh \
	gather_all_results.sh \
	grep_shielding.sh \
	gather_averaged_results.sh \
	meas2pdb.sh \
	Nanotubes.pl \
	ReSequenceDX.pl

bin_SCRIPTS = ${scripts}

AM_CFLAGS = -Wall -W -Wstrict-prototypes -Wmissing-prototypes -Wold-style-definition -Wshadow -Wpointer-arith -Wcast-align -Wcast-qual -Wwrite-strings -Wredundant-decls -Wnested-externs -Wmissing-noreturn -Wformat-security -Wmissing-format-attribute -Winit-self