### Bonds from file

AT_SETUP([Molecules - TREMOLO dbond file])
AT_KEYWORDS([molecules bond-file])

file=silica.pov1.0000.pdb
AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Molecules/BondFile/pre/silica.pov1.0000.pdb $file], 0)
AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Molecules/BondFile/pre/silica.dbond.0000 .], 0)
AT_CHECK([chmod u+w $file], 0)
AT_CHECK([../../molecuilder -i $file -v 4 --select-molecule-by-id 0 -A silica.dbond.0000 --skiplines 2 --offset 1], 0, [stdout], [stderr])
AT_CHECK([fgrep -c "CONECT 7153 6098 5949 5922" $file], 0, [1
], [ignore])

AT_CLEANUP


AT_SETUP([Molecules - TREMOLO dbond file with Undo])
AT_XFAIL_IF([/bin/true])
AT_KEYWORDS([molecules bond-file undo])

file=silica.pov1.0000.pdb
AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Molecules/BondFile/pre/silica.pov1.0000.pdb $file], 0)
AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Molecules/BondFile/pre/silica.dbond.0000 .], 0)
AT_CHECK([chmod u+w $file], 0)
AT_CHECK([../../molecuilder -i $file -v 4 --select-molecule-by-id 0 -A silica.dbond.0000 --skiplines 2 --offset 1 --undo], 0, [stdout], [stderr])
AT_CHECK([fgrep -c "CONECT 7153 6098 5949 5922" $file], 0, [1
], [ignore])

AT_CLEANUP


AT_SETUP([Molecules - TREMOLO dbond file with Redo])
AT_XFAIL_IF([/bin/true])
AT_KEYWORDS([molecules bond-file redo])

file=silica.pov1.0000.pdb
AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Molecules/BondFile/pre/silica.pov1.0000.pdb $file], 0)
AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Molecules/BondFile/pre/silica.dbond.0000 .], 0)
AT_CHECK([chmod u+w $file], 0)
AT_CHECK([../../molecuilder -i $file -v 4 --select-molecule-by-id 0 -A silica.dbond.0000 --skiplines 2 --offset 1 --undo --redo], 0, [stdout], [stderr])
AT_CHECK([fgrep -c "CONECT 7153 6098 5949 5922" $file], 0, [1
], [ignore])

AT_CLEANUP