### Bonds from file

AT_SETUP([Molecules - Fragmentation bonds file])
AT_KEYWORDS([Molecules])
AT_CHECK([/bin/cp -f ${abs_top_srcdir}/${AUTOTEST_PATH}/Molecules/BondFile/pre/test.* .], 0)
AT_CHECK([../../molecuilder -i test.conf -o pdb -v 4 --select-molecule-by-id 0 -A test.dbond --skiplines 1 --offset 0], 0, [stdout], [stderr])
AT_CHECK([file=test.pdb; diff -I '.*reated by molecuilder.*' $file ${abs_top_srcdir}/${AUTOTEST_PATH}/Molecules/BondFile/post/$file], 0, [ignore], [ignore])
AT_CLEANUP

AT_SETUP([Molecules - TREMOLO dbond file])
AT_KEYWORDS([Molecules])
AT_CHECK([/bin/cp -f ${abs_top_srcdir}/${AUTOTEST_PATH}/Molecules/BondFile/pre/silica.* .], 0)
AT_CHECK([../../molecuilder -i silica.pov1.0000.pdb -v 4 --select-molecule-by-id 0 -A silica.dbond.0000 --skiplines 2 --offset 1], 0, [stdout], [stderr])
AT_CHECK([fgrep -c "CONECT 7153 6098 5949 5922" silica.pov1.0000.pdb], 0, [1
], [ignore])
AT_CLEANUP