Changeset e6317b for src/unittests


Ignore:
Timestamp:
Jun 16, 2010, 12:24:21 PM (15 years ago)
Author:
Tillmann Crueger <crueger@…>
Branches:
Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable
Children:
492279
Parents:
f8e486 (diff), 980dd6 (diff)
Note: this is a merge changeset, the changes displayed below correspond to the merge itself.
Use the (diff) links above to see all the changes relative to each parent.
Message:

Broken: Merge commit 'Gitosis/stable' into stable

Conflicts:

molecuilder/src/Actions/AnalysisAction/PairCorrelationToPointAction.cpp
molecuilder/src/Actions/AnalysisAction/PairCorrelationToSurfaceAction.cpp
molecuilder/src/Makefile.am

Location:
src/unittests
Files:
6 edited

Legend:

Unmodified
Added
Removed

  • src/unittests/AnalysisCorrelationToPointUnitTest.cpp

    rf8e486 re6317b  
    4444  point = NULL;
    4545
    46   // construct molecule (tetraeder of hydrogens)
     46  // construct element list
     47  std::vector<element *> elements;
    4748  hydrogen = World::getInstance().getPeriode()->FindElement(1);
    4849  CPPUNIT_ASSERT(hydrogen != NULL && "hydrogen element not found");
     50  elements.push_back(hydrogen);
     51  // construct molecule (tetraeder of hydrogens)
    4952  TestMolecule = World::getInstance().createMolecule();
    5053  Walker = World::getInstance().createAtom();
    … …  
    7679
    7780  // init maps
    78   pointmap = CorrelationToPoint( (MoleculeListClass * const)TestList, (const element * const)hydrogen, (const Vector *)point );
     81  pointmap = CorrelationToPoint( (MoleculeListClass * const)TestList, elements, (const Vector *)point );
    7982  binmap = NULL;
    8083

  • src/unittests/AnalysisCorrelationToPointUnitTest.hpp

    rf8e486 re6317b  
    3737      MoleculeListClass *TestList;
    3838      molecule *TestMolecule;
    39       const element *hydrogen;
     39      element *hydrogen;
    4040
    4141      CorrelationToPointMap *pointmap;

  • src/unittests/AnalysisCorrelationToSurfaceUnitTest.cpp

    rf8e486 re6317b  
    5252  LC = NULL;
    5353
     54  // prepare element list
     55  hydrogen = World::getInstance().getPeriode()->FindElement(1);
     56  CPPUNIT_ASSERT(hydrogen != NULL && "hydrogen element not found");
     57  elements.clear();
     58
    5459  // construct molecule (tetraeder of hydrogens) base
    55   hydrogen = World::getInstance().getPeriode()->FindElement(1);
    5660  TestSurfaceMolecule = World::getInstance().createMolecule();
    5761
    … …  
    151155{
    152156  // do the pair correlation
    153   surfacemap = CorrelationToSurface( TestList, hydrogen, Surface, LC );
     157  elements.push_back(hydrogen);
     158  surfacemap = CorrelationToSurface( TestList, elements, Surface, LC );
    154159//  OutputCorrelationToSurface ( (ofstream *)&cout, surfacemap );
    155160  CPPUNIT_ASSERT( surfacemap != NULL );
    … …  
    160165{
    161166  BinPairMap::iterator tester;
    162   surfacemap = CorrelationToSurface( TestList, hydrogen, Surface, LC );
     167  elements.push_back(hydrogen);
     168  surfacemap = CorrelationToSurface( TestList, elements, Surface, LC );
    163169  // put pair correlation into bins and check with no range
    164170//  OutputCorrelationToSurface ( (ofstream *)&cout, surfacemap );
    … …  
    175181{
    176182  BinPairMap::iterator tester;
    177   surfacemap = CorrelationToSurface( TestList, hydrogen, Surface, LC );
     183  elements.push_back(hydrogen);
     184  surfacemap = CorrelationToSurface( TestList, elements, Surface, LC );
    178185//  OutputCorrelationToSurface ( (ofstream *)&cout, surfacemap );
    179186  // ... and check with [0., 2.] range
    … …  
    193200{
    194201  BinPairMap::iterator tester;
    195   surfacemap = CorrelationToSurface( TestList, carbon, Surface, LC );
     202  elements.push_back(carbon);
     203  surfacemap = CorrelationToSurface( TestList, elements, Surface, LC );
    196204//  OutputCorrelationToSurface ( (ofstream *)&cout, surfacemap );
    197205  // put pair correlation into bins and check with no range
    … …  
    212220{
    213221  BinPairMap::iterator tester;
    214   surfacemap = CorrelationToSurface( TestList, carbon, Surface, LC );
     222  elements.push_back(carbon);
     223  surfacemap = CorrelationToSurface( TestList, elements, Surface, LC );
    215224//  OutputCorrelationToSurface ( (ofstream *)&cout, surfacemap );
    216225  // ... and check with [0., 2.] range

  • src/unittests/AnalysisCorrelationToSurfaceUnitTest.hpp

    rf8e486 re6317b  
    4545      MoleculeListClass *TestList;
    4646      molecule *TestSurfaceMolecule;
    47       const element *hydrogen;
    48       const element *carbon;
     47      element *hydrogen;
     48      element *carbon;
     49      std::vector<element *> elements;
    4950
    5051      CorrelationToSurfaceMap *surfacemap;

  • src/unittests/AnalysisPairCorrelationUnitTest.cpp

    rf8e486 re6317b  
    4747  binmap = NULL;
    4848
     49  // construct element list
     50  std::vector<element *> elements;
     51  hydrogen = World::getInstance().getPeriode()->FindElement(1);
     52  CPPUNIT_ASSERT(hydrogen != NULL && "hydrogen element not found");
     53  elements.push_back(hydrogen);
     54  elements.push_back(hydrogen);
     55
    4956  // construct molecule (tetraeder of hydrogens)
    50   hydrogen = World::getInstance().getPeriode()->FindElement(1);
    5157  TestMolecule = World::getInstance().createMolecule();
    5258  Walker = World::getInstance().createAtom();
    … …  
    7581
    7682  // init maps
    77   correlationmap = PairCorrelation( TestList, hydrogen, hydrogen );
     83  correlationmap = PairCorrelation( TestList, elements);
    7884  binmap = NULL;
    7985

  • src/unittests/AnalysisPairCorrelationUnitTest.hpp

    rf8e486 re6317b  
    3737      MoleculeListClass *TestList;
    3838      molecule *TestMolecule;
    39       const element *hydrogen;
     39      element *hydrogen;
    4040
    4141      PairCorrelationMap *correlationmap;
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