Changeset da3024 for src/builder.cpp
- Timestamp:
- Jun 19, 2010, 3:58:32 PM (15 years ago)
- Branches:
- Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable
- Children:
- 0d5dce, 55240c4, 61b5f0, 7a176b, ce4487
- Parents:
- bf0edf
- File:
-
- 1 edited
Legend:
- Unmodified
- Added
- Removed
-
src/builder.cpp
rbf0edf rda3024 1358 1358 }; 1359 1359 1360 #endif1361 1360 1362 1361 /** Tries given filename or standard on saving the config file. … … 1484 1483 }; 1485 1484 1485 #endif 1486 1486 1487 /** Parses the command line options. 1487 1488 * Note that this function is from now on transitional. All commands that are not passed … … 1501 1502 { 1502 1503 Vector x,y,z,n; // coordinates for absolute point in cell volume 1503 double *factor; // unit factor if desired1504 1504 ifstream test; 1505 1505 ofstream output; 1506 1506 string line; 1507 atom *first;1508 1507 bool SaveFlag = false; 1509 1508 int ExitFlag = 0; … … 1511 1510 double volume = 0.; 1512 1511 enum ConfigStatus configPresent = absent; 1513 clock_t start,end;1514 double MaxDistance = -1;1515 1512 int argptr; 1516 1513 molecule *mol = NULL; 1517 1514 string BondGraphFileName("\n"); 1518 bool DatabasePathGiven = false;1519 1515 1520 1516 if (argc > 1) { // config file specified as option … … 2201 2197 int main(int argc, char **argv) 2202 2198 { 2203 config *configuration = World::getInstance().getConfig();2204 2199 // while we are non interactive, we want to abort from asserts 2205 2200 //ASSERT_DO(Assert::Abort); 2206 molecule *mol = NULL;2207 2201 Vector x, y, z, n; 2208 2202 ifstream test;
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