Changeset ce7fdc for src/Actions/MoleculeAction

Timestamp:

Oct 13, 2011, 1:03:40 PM (14 years ago)

Author:

Frederik Heber <heber@…>

Branches:

Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, Candidate_v1.7.0, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable

Children:

61ff05, db67ea

Parents:

e0f8c8

git-author:

Frederik Heber <heber@…> (09/09/11 18:42:38)

git-committer:

Frederik Heber <heber@…> (10/13/11 13:03:40)

Message:

HUGE: All Action-related codes resides now in namespace MoleCuilder.

• removed all namespace std in Actions..., replaced by MoleCuilder.

Location:

src/Actions/MoleculeAction

Files:

• BondFileAction.cpp (modified) (1 diff)
• ChangeNameAction.cpp (modified) (1 diff)
• CopyAction.cpp (modified) (1 diff)
• CreateMicelleAction.cpp (modified) (1 diff)
• FillVoidWithMoleculeAction.cpp (modified) (1 diff)
• FillWithMoleculeAction.cpp (modified) (1 diff)
• LinearInterpolationofTrajectoriesAction.cpp (modified) (1 diff)
• LoadAction.cpp (modified) (1 diff)
• RotateAroundSelfByAngleAction.cpp (modified) (1 diff)
• RotateToPrincipalAxisSystemAction.cpp (modified) (1 diff)
• SaveAdjacencyAction.cpp (modified) (1 diff)
• SaveBondsAction.cpp (modified) (1 diff)
• SaveSelectedMoleculesAction.cpp (modified) (1 diff)
• SaveTemperatureAction.cpp (modified) (1 diff)
• SuspendInWaterAction.cpp (modified) (1 diff)
• VerletIntegrationAction.cpp (modified) (1 diff)

src/Actions/MoleculeAction/BondFileAction.cpp

@@ -30 +30 @@
 #include <string>
 
-using namespace std;
+#include "Actions/MoleculeAction/BondFileAction.hpp"
 
-#include "Actions/MoleculeAction/BondFileAction.hpp"
+using namespace MoleCuilder;
 
 // and construct the stuff

src/Actions/MoleculeAction/ChangeNameAction.cpp

@@ -26 +26 @@
 #include <string>
 
-using namespace std;
+#include "Actions/MoleculeAction/ChangeNameAction.hpp"
 
-#include "Actions/MoleculeAction/ChangeNameAction.hpp"
+using namespace MoleCuilder;
 
 // and construct the stuff

src/Actions/MoleculeAction/CopyAction.cpp

@@ -32 +32 @@
 #include <string>
 
-using namespace std;
+#include "Actions/MoleculeAction/CopyAction.hpp"
 
-#include "Actions/MoleculeAction/CopyAction.hpp"
+using namespace MoleCuilder;
 
 // and construct the stuff

src/Actions/MoleculeAction/CreateMicelleAction.cpp

@@ -55 +55 @@
 #include "Actions/ValueStorage.hpp"
 
+using namespace MoleCuilder;
 
 /** =========== define the function ====================== */

src/Actions/MoleculeAction/FillVoidWithMoleculeAction.cpp

@@ -36 +36 @@
 #include <string>
 
-using namespace std;
+#include "Actions/MoleculeAction/FillVoidWithMoleculeAction.hpp"
 
-#include "Actions/MoleculeAction/FillVoidWithMoleculeAction.hpp"
+using namespace MoleCuilder;
 
 // and construct the stuff

src/Actions/MoleculeAction/FillWithMoleculeAction.cpp

@@ -31 +31 @@
 #include "World.hpp"
 
-
 #include <iostream>
 #include <string>
 
-using namespace std;
+#include "Actions/MoleculeAction/FillWithMoleculeAction.hpp"
 
-#include "Actions/MoleculeAction/FillWithMoleculeAction.hpp"
+using namespace MoleCuilder;
 
 // and construct the stuff

src/Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.cpp

@@ -34 +34 @@
 #include <string>
 
-using namespace std;
+#include "Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.hpp"
 
-#include "Actions/MoleculeAction/LinearInterpolationofTrajectoriesAction.hpp"
+using namespace MoleCuilder;
 
 // and construct the stuff

src/Actions/MoleculeAction/LoadAction.cpp

@@ -32 +32 @@
 #include <boost/filesystem/fstream.hpp>
 
-using namespace std;
+#include "LoadAction.hpp"
 
-#include "LoadAction.hpp"
+using namespace MoleCuilder;
 
 // and construct the stuff

src/Actions/MoleculeAction/RotateAroundSelfByAngleAction.cpp

@@ -27 +27 @@
 #include "molecule.hpp"
 
-
 #include <iostream>
 #include <fstream>
 #include <string>
 
-using namespace std;
+#include "Actions/MoleculeAction/RotateAroundSelfByAngleAction.hpp"
 
-#include "Actions/MoleculeAction/RotateAroundSelfByAngleAction.hpp"
+using namespace MoleCuilder;
 
 // and construct the stuff

src/Actions/MoleculeAction/RotateToPrincipalAxisSystemAction.cpp

@@ -28 +28 @@
 #include "molecule.hpp"
 
-
 #include <iostream>
 #include <fstream>
 #include <string>
 
-using namespace std;
+#include "Actions/MoleculeAction/RotateToPrincipalAxisSystemAction.hpp"
 
-#include "Actions/MoleculeAction/RotateToPrincipalAxisSystemAction.hpp"
+using namespace MoleCuilder;
 
 // and construct the stuff

src/Actions/MoleculeAction/SaveAdjacencyAction.cpp

@@ -27 +27 @@
 #include "World.hpp"
 
-
 #include <iostream>
 #include <fstream>
 #include <string>
 
-using namespace std;
+#include "Actions/MoleculeAction/SaveAdjacencyAction.hpp"
 
-#include "Actions/MoleculeAction/SaveAdjacencyAction.hpp"
+using namespace MoleCuilder;
 
 // and construct the stuff

src/Actions/MoleculeAction/SaveBondsAction.cpp

@@ -27 +27 @@
 #include "World.hpp"
 
-
 #include <iostream>
 #include <fstream>
 #include <string>
 
-using namespace std;
+#include "Actions/MoleculeAction/SaveBondsAction.hpp"
 
-#include "Actions/MoleculeAction/SaveBondsAction.hpp"
+using namespace MoleCuilder;
 
 // and construct the stuff

src/Actions/MoleculeAction/SaveSelectedMoleculesAction.cpp

@@ -29 +29 @@
 #include <boost/filesystem/fstream.hpp>
 
-using namespace std;
+#include "SaveSelectedMoleculesAction.hpp"
 
-#include "SaveSelectedMoleculesAction.hpp"
+using namespace MoleCuilder;
 
 // and construct the stuff

src/Actions/MoleculeAction/SaveTemperatureAction.cpp

@@ -33 +33 @@
 #include <vector>
 
-using namespace std;
+#include "Actions/MoleculeAction/SaveTemperatureAction.hpp"
 
-#include "Actions/MoleculeAction/SaveTemperatureAction.hpp"
+using namespace MoleCuilder;
 
 // and construct the stuff

src/Actions/MoleculeAction/SuspendInWaterAction.cpp

@@ -29 +29 @@
 #include <string>
 
-using namespace std;
+#include "Actions/MoleculeAction/SuspendInWaterAction.hpp"
 
-#include "Actions/MoleculeAction/SuspendInWaterAction.hpp"
+using namespace MoleCuilder;
 
 // and construct the stuff

src/Actions/MoleculeAction/VerletIntegrationAction.cpp

@@ -33 +33 @@
 #include <string>
 
-using namespace std;
+#include "Actions/MoleculeAction/VerletIntegrationAction.hpp"
 
-#include "Actions/MoleculeAction/VerletIntegrationAction.hpp"
+using namespace MoleCuilder;
 
 // and construct the stuff