Changeset ca1ba5
- Timestamp:
- Jul 22, 2010, 7:38:03 PM (14 years ago)
- Branches:
- Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable
- Children:
- 9d33ba
- Parents:
- 75dc28
- Location:
- src/Actions/AnalysisAction
- Files:
-
- 5 edited
Legend:
- Unmodified
- Added
- Removed
-
src/Actions/AnalysisAction/PairCorrelationAction.cpp
r75dc28 rca1ba5 40 40 Dialog* AnalysisPairCorrelationAction::createDialog() { 41 41 Dialog *dialog = UIFactory::getInstance().makeDialog(); 42 int ranges[3] = {1, 1, 1};43 double BinEnd = 0.;44 double BinStart = 0.;45 double BinWidth = 0.;46 molecule *Boundary = NULL;47 string outputname;48 string binoutputname;49 bool periodic;50 ofstream output;51 ofstream binoutput;52 std::vector< element *> elements;53 string type;54 Vector Point;55 BinPairMap *binmap = NULL;56 42 57 dialog->queryElement("elements", &elements,MapOfActions::getInstance().getDescription("elements"));58 dialog->queryDouble("bin-start", &BinStart,MapOfActions::getInstance().getDescription("bin-start"));59 dialog->queryDouble("bin-width", &BinWidth,MapOfActions::getInstance().getDescription("bin-width"));60 dialog->queryDouble("bin-end", &BinEnd,MapOfActions::getInstance().getDescription("bin-end"));61 dialog->queryString("output-file", &outputname,MapOfActions::getInstance().getDescription("output-file"));62 dialog->queryString("bin-output-file", &binoutputname,MapOfActions::getInstance().getDescription("bin-output-file"));63 dialog->queryBoolean("periodic", &periodic,MapOfActions::getInstance().getDescription("periodic"));43 dialog->queryElement("elements", MapOfActions::getInstance().getDescription("elements")); 44 dialog->queryDouble("bin-start", MapOfActions::getInstance().getDescription("bin-start")); 45 dialog->queryDouble("bin-width", MapOfActions::getInstance().getDescription("bin-width")); 46 dialog->queryDouble("bin-end", MapOfActions::getInstance().getDescription("bin-end")); 47 dialog->queryString("output-file", MapOfActions::getInstance().getDescription("output-file")); 48 dialog->queryString("bin-output-file", MapOfActions::getInstance().getDescription("bin-output-file")); 49 dialog->queryBoolean("periodic", MapOfActions::getInstance().getDescription("periodic")); 64 50 65 51 return dialog; -
src/Actions/AnalysisAction/PointCorrelationAction.cpp
r75dc28 rca1ba5 40 40 Dialog* AnalysisPointCorrelationAction::createDialog() { 41 41 Dialog *dialog = UIFactory::getInstance().makeDialog(); 42 int ranges[3] = {1, 1, 1};43 double BinEnd = 0.;44 double BinStart = 0.;45 double BinWidth = 0.;46 molecule *Boundary = NULL;47 string outputname;48 string binoutputname;49 bool periodic;50 ofstream output;51 ofstream binoutput;52 std::vector< element *> elements;53 string type;54 Vector Point;55 BinPairMap *binmap = NULL;56 42 57 dialog->queryVector("position", &Point,false, MapOfActions::getInstance().getDescription("position"));58 dialog->queryElement("elements", &elements,MapOfActions::getInstance().getDescription("elements"));59 dialog->queryDouble("bin-start", &BinStart,MapOfActions::getInstance().getDescription("bin-start"));60 dialog->queryDouble("bin-width", &BinWidth,MapOfActions::getInstance().getDescription("bin-width"));61 dialog->queryDouble("bin-end", &BinEnd,MapOfActions::getInstance().getDescription("bin-end"));62 dialog->queryString("output-file", &outputname,MapOfActions::getInstance().getDescription("output-file"));63 dialog->queryString("bin-output-file", &binoutputname,MapOfActions::getInstance().getDescription("bin-output-file"));64 dialog->queryBoolean("periodic", &periodic,MapOfActions::getInstance().getDescription("periodic"));43 dialog->queryVector("position", false, MapOfActions::getInstance().getDescription("position")); 44 dialog->queryElement("elements", MapOfActions::getInstance().getDescription("elements")); 45 dialog->queryDouble("bin-start", MapOfActions::getInstance().getDescription("bin-start")); 46 dialog->queryDouble("bin-width", MapOfActions::getInstance().getDescription("bin-width")); 47 dialog->queryDouble("bin-end", MapOfActions::getInstance().getDescription("bin-end")); 48 dialog->queryString("output-file", MapOfActions::getInstance().getDescription("output-file")); 49 dialog->queryString("bin-output-file", MapOfActions::getInstance().getDescription("bin-output-file")); 50 dialog->queryBoolean("periodic", MapOfActions::getInstance().getDescription("periodic")); 65 51 66 52 return dialog; -
src/Actions/AnalysisAction/PrincipalAxisSystemAction.cpp
r75dc28 rca1ba5 31 31 {} 32 32 33 Dialog* AnalysisPrincipalAxisSystemAction::createDialog() { 34 Dialog *dialog = UIFactory::getInstance().makeDialog(); 35 36 dialog->queryMolecule(NAME, MapOfActions::getInstance().getDescription(NAME)); 37 38 return dialog; 39 } 40 33 41 Action::state_ptr AnalysisPrincipalAxisSystemAction::performCall() { 34 Dialog *dialog = UIFactory::getInstance().makeDialog();35 42 molecule *mol = NULL; 36 43 37 dialog->queryMolecule(NAME, &mol, MapOfActions::getInstance().getDescription(NAME)); 38 39 if(dialog->display()) { 40 DoLog(0) && (Log() << Verbose(0) << "Evaluating prinicipal axis." << endl); 41 mol->PrincipalAxisSystem(false); 42 delete dialog; 43 return Action::success; 44 } else { 45 delete dialog; 46 return Action::failure; 47 } 44 MapOfActions::getInstance().queryCurrentValue(NAME, mol); 45 DoLog(0) && (Log() << Verbose(0) << "Evaluating prinicipal axis." << endl); 46 mol->PrincipalAxisSystem(false); 47 return Action::success; 48 48 } 49 49 50 50 Action::state_ptr AnalysisPrincipalAxisSystemAction::performUndo(Action::state_ptr _state) { 51 // ParserLoadXyzState *state = assert_cast<ParserLoadXyzState*>(_state.get()); 52 53 return Action::failure; 54 // string newName = state->mol->getName(); 55 // state->mol->setName(state->lastName); 56 // 57 // return Action::state_ptr(new ParserLoadXyzState(state->mol,newName)); 51 return Action::success; 58 52 } 59 53 60 54 Action::state_ptr AnalysisPrincipalAxisSystemAction::performRedo(Action::state_ptr _state){ 61 return Action:: failure;55 return Action::success; 62 56 } 63 57 64 58 bool AnalysisPrincipalAxisSystemAction::canUndo() { 65 return false;59 return true; 66 60 } 67 61 68 62 bool AnalysisPrincipalAxisSystemAction::shouldUndo() { 69 return false;63 return true; 70 64 } 71 65 -
src/Actions/AnalysisAction/PrincipalAxisSystemAction.hpp
r75dc28 rca1ba5 21 21 virtual const std::string getName(); 22 22 private: 23 virtual Dialog * createDialog(); 23 24 virtual Action::state_ptr performCall(); 24 25 virtual Action::state_ptr performUndo(Action::state_ptr); -
src/Actions/AnalysisAction/SurfaceCorrelationAction.cpp
r75dc28 rca1ba5 40 40 Dialog* AnalysisSurfaceCorrelationAction::createDialog() { 41 41 Dialog *dialog = UIFactory::getInstance().makeDialog(); 42 int ranges[3] = {1, 1, 1};43 double BinEnd = 0.;44 double BinStart = 0.;45 double BinWidth = 0.;46 molecule *Boundary = NULL;47 string outputname;48 string binoutputname;49 bool periodic;50 ofstream output;51 ofstream binoutput;52 std::vector< element *> elements;53 string type;54 Vector Point;55 BinPairMap *binmap = NULL;56 42 57 dialog->queryMolecule("molecule-by-id", &Boundary,MapOfActions::getInstance().getDescription("molecule-by-id"));58 dialog->queryElement("elements", &elements,MapOfActions::getInstance().getDescription("elements"));59 dialog->queryDouble("bin-start", &BinStart,MapOfActions::getInstance().getDescription("bin-start"));60 dialog->queryDouble("bin-width", &BinWidth,MapOfActions::getInstance().getDescription("bin-width"));61 dialog->queryDouble("bin-end", &BinEnd,MapOfActions::getInstance().getDescription("bin-end"));62 dialog->queryString("output-file", &outputname,MapOfActions::getInstance().getDescription("output-file"));63 dialog->queryString("bin-output-file", &binoutputname,MapOfActions::getInstance().getDescription("bin-output-file"));64 dialog->queryBoolean("periodic", &periodic,MapOfActions::getInstance().getDescription("periodic"));43 dialog->queryMolecule("molecule-by-id", MapOfActions::getInstance().getDescription("molecule-by-id")); 44 dialog->queryElement("elements", MapOfActions::getInstance().getDescription("elements")); 45 dialog->queryDouble("bin-start", MapOfActions::getInstance().getDescription("bin-start")); 46 dialog->queryDouble("bin-width", MapOfActions::getInstance().getDescription("bin-width")); 47 dialog->queryDouble("bin-end", MapOfActions::getInstance().getDescription("bin-end")); 48 dialog->queryString("output-file", MapOfActions::getInstance().getDescription("output-file")); 49 dialog->queryString("bin-output-file", MapOfActions::getInstance().getDescription("bin-output-file")); 50 dialog->queryBoolean("periodic", MapOfActions::getInstance().getDescription("periodic")); 65 51 66 52 return dialog;
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