Changeset a91710 for src/Fragmentation


Ignore:
Timestamp:
Aug 21, 2014, 6:59:33 AM (11 years ago)
Author:
Frederik Heber <heber@…>
Branches:
Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, Candidate_v1.7.0, Candidate_v1.7.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable
Children:
29b35e
Parents:
4c9101 (diff), 0c72e2 (diff)
Note: this is a merge changeset, the changes displayed below correspond to the merge itself.
Use the (diff) links above to see all the changes relative to each parent.
Message:

Merge branch 'Fixes_Ubuntu14_04' into stable

Location:
src/Fragmentation
Files:
15 edited

Legend:

Unmodified
Added
Removed
  • src/Fragmentation/Automation/MPQCCommandFragmentController.cpp

    r4c9101 ra91710  
    7474//    job->DoValenceOnly = _DoValenceOnly;
    7575#ifndef HAVE_JOBMARKET
    76     job->setId(getAvailableId());
     76    JobId_t id = getAvailableId();
     77    if (id == (JobId_t)JobId::IllegalJob) {
     78      queue.clear();
     79      break;
     80    }
     81    job->setId(id);
    7782    if (!_executable.empty())
    7883      job->setCommand(_executable);
  • src/Fragmentation/Automation/MPQCFragmentController.cpp

    r4c9101 ra91710  
    6767    job->DoValenceOnly = _DoValenceOnly;
    6868    JobId_t id = getAvailableId();
    69     if (id == FragmentJob::IllegalJob) {
     69    if (id == (JobId_t)JobId::IllegalJob) {
    7070      status = false;
    7171      break;
     
    7474  }
    7575  // add the jobs
    76   addJobs(newjobs);
     76  if (status)
     77    addJobs(newjobs);
    7778  status &= (newjobs.size() != 0);
    7879
  • src/Fragmentation/Automation/Makefile.am

    r4c9101 ra91710  
    4040noinst_LTLIBRARIES += libMolecuilderFragmentationAutomation.la
    4141libMolecuilderFragmentationAutomation_la_includedir = $(includedir)/MoleCuilder/
    42 libMolecuilderFragmentationAutomation_la_CPPFLAGS = ${BOOST_CPPFLAGS} ${CodePatterns_CFLAGS} $(JobMarket_CFLAGS)
     42libMolecuilderFragmentationAutomation_la_CPPFLAGS = $(AM_CPPFLAGS) ${BOOST_CPPFLAGS} ${CodePatterns_CFLAGS} $(JobMarket_CFLAGS)
    4343libMolecuilderFragmentationAutomation_la_LDFLAGS = -ldl ${BOOST_LDFLAGS}
    4444libMolecuilderFragmentationAutomation_la_LIBADD = \
  • src/Fragmentation/Automation/SpecificFragmentController_ReceiveResultContainer_impl.hpp

    r4c9101 ra91710  
    3232  // convert
    3333  std::vector<T> fragmentData;
    34   ConvertFragmentResultTo(fragmentresults, fragmentData);
     34  SpecificFragmentController::ReceiveResultContainer<T>::ConvertFragmentResultTo(
     35    fragmentresults,
     36    fragmentData);
    3537
    3638  // insert into map
    37   insertResults(fragmentresults, fragmentData);
     39  SpecificFragmentController::ReceiveResultContainer<T>::insertResults(
     40    fragmentresults,
     41    fragmentData);
    3842
    3943  return fragmentData.size();
  • src/Fragmentation/Exporters/unittests/Makefile.am

    r4c9101 ra91710  
    2222
    2323FRAGMENTATIONEXPORTERSLIBS = \
     24        libUnitTest.la \
     25        ../libMolecuilder.la \
    2426        ../libMolecuilderFragmentation.la \
    2527        ${CodePatterns_LIBS} \
    2628        $(BOOST_LIB)
    2729
    28 HydrogenPoolUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
     30HydrogenPoolUnitTest_SOURCES = \
    2931        ../Fragmentation/Exporters/unittests/HydrogenPoolUnitTest.cpp \
    3032        ../Fragmentation/Exporters/unittests/HydrogenPoolUnitTest.hpp
     
    3335        ${FRAGMENTATIONEXPORTERSLIBS}
    3436       
    35 SaturatedFragmentUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
     37SaturatedFragmentUnitTest_SOURCES = \
    3638        ../Fragmentation/Exporters/unittests/SaturatedFragmentUnitTest.cpp \
    3739        ../Fragmentation/Exporters/unittests/SaturatedFragmentUnitTest.hpp
     
    4143        ${FRAGMENTATIONEXPORTERSLIBS}
    4244
    43 SaturationDistanceMaximizerUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
     45SaturationDistanceMaximizerUnitTest_SOURCES = \
    4446        ../Fragmentation/Exporters/unittests/SaturationDistanceMaximizerUnitTest.cpp \
    4547        ../Fragmentation/Exporters/unittests/SaturationDistanceMaximizerUnitTest.hpp \
  • src/Fragmentation/Homology/unittests/Makefile.am

    r4c9101 ra91710  
    2525
    2626FRAGMENTATIONHOMOLOGYLIBS = \
     27        libUnitTest.la \
     28        ../libMolecuilder.la \
    2729        ../libMolecuilderFragmentationSetValues.la \
    2830        ../libMolecuilderFragmentation.la \
     
    3335        $(BOOST_LIB)
    3436
    35 FragmentEdgeUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
     37FragmentEdgeUnitTest_SOURCES = \
    3638        ../Fragmentation/Homology/unittests/FragmentEdgeUnitTest.cpp \
    3739        ../Fragmentation/Homology/unittests/FragmentEdgeUnitTest.hpp
    3840FragmentEdgeUnitTest_LDADD = ${FRAGMENTATIONHOMOLOGYLIBS}
    3941
    40 FragmentNodeUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
     42FragmentNodeUnitTest_SOURCES = \
    4143        ../Fragmentation/Homology/unittests/FragmentNodeUnitTest.cpp \
    4244        ../Fragmentation/Homology/unittests/FragmentNodeUnitTest.hpp
    4345FragmentNodeUnitTest_LDADD = ${FRAGMENTATIONHOMOLOGYLIBS}
    4446       
    45 HomologyContainerUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
     47HomologyContainerUnitTest_SOURCES = \
    4648        ../Fragmentation/Homology/unittests/HomologyContainerUnitTest.cpp \
    4749        ../Fragmentation/Homology/unittests/HomologyContainerUnitTest.hpp \
     
    5456        $(BOOST_LIB)
    5557
    56 HomologyGraphUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
     58HomologyGraphUnitTest_SOURCES = \
    5759        ../Fragmentation/Homology/unittests/HomologyGraphUnitTest.cpp \
    5860        ../Fragmentation/Homology/unittests/HomologyGraphUnitTest.hpp
  • src/Fragmentation/Interfragmenter.cpp

    r4c9101 ra91710  
    136136    // create a lookup specific to this fragment
    137137    atomkeyset_t fragmentmap;
    138     for (candidates_t::const_iterator iter = candidates.begin();
    139         iter != candidates.end(); ++iter) {
    140       const atom * _atom = *iter;
     138    for (candidates_t::const_iterator candidateiter = candidates.begin();
     139        candidateiter != candidates.end(); ++candidateiter) {
     140      const atom * _atom = *candidateiter;
    141141      atomkeyset_t::const_iterator iter = atomkeyset.find(_atom);
    142142      ASSERT( iter != atomkeyset.end(),
     
    153153      const atom *_atom = *candidateiter;
    154154      LOG(3, "DEBUG: Current candidate is " << *_atom << ".");
    155       atomkeyset_t::iterator iter = fragmentmap.find(_atom);
    156       ASSERT( iter != fragmentmap.end(),
     155      atomkeyset_t::iterator finditer = fragmentmap.find(_atom);
     156      ASSERT( finditer != fragmentmap.end(),
    157157          "Interfragmenter::operator() - could not find atom "
    158158          +toString(_atom->getId())+" in fragment specific lookup.");
    159       keysets_t &othersets = iter->second;
     159      keysets_t &othersets = finditer->second;
    160160      keysets_t::iterator otheriter = othersets.begin();
    161161      while (otheriter != othersets.end()) {
  • src/Fragmentation/Summation/Containers/Makefile.am

    r4c9101 ra91710  
    4141noinst_LTLIBRARIES += libMolecuilderFragmentationContainers.la
    4242libMolecuilderFragmentationContainers_la_includedir = $(includedir)/MoleCuilder/
    43 libMolecuilderFragmentationContainers_la_CPPFLAGS = ${BOOST_CPPFLAGS} ${CodePatterns_CFLAGS} $(JobMarket_CFLAGS)
     43libMolecuilderFragmentationContainers_la_CPPFLAGS = $(AM_CPPFLAGS) ${BOOST_CPPFLAGS} ${CodePatterns_CFLAGS} $(JobMarket_CFLAGS)
    4444libMolecuilderFragmentationContainers_la_LDFLAGS = -ldl ${BOOST_LDFLAGS}
    4545libMolecuilderFragmentationContainers_la_LIBADD = \
  • src/Fragmentation/Summation/Containers/unittests/Makefile.am

    r4c9101 ra91710  
    1717
    1818FRAGMENTATIONCONTAINERLIBS = \
     19  libUnitTest.la \
     20  ../libMolecuilder.la \
    1921  ../libMolecuilderFragmentationSummation.la \
    2022  $(BOOST_SERIALIZATION_LDFLAGS) $(BOOST_SERIALIZATION_LIBS) \
     
    2426
    2527MPQCDataUnitTest_LDFLAGS = ${CodePatterns_LIBS} $(CPPUNIT_LIBS) -ldl
    26 MPQCDataUnitTest_CPPFLAGS = ${BOOST_CPPFLAGS} $(CPPUNIT_CFLAGS) ${CodePatterns_CFLAGS}
    27 MPQCDataUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
     28MPQCDataUnitTest_CPPFLAGS = $(AM_CPPFLAGS) ${BOOST_CPPFLAGS} $(CPPUNIT_CFLAGS) ${CodePatterns_CFLAGS}
     29MPQCDataUnitTest_SOURCES = \
    2830  ../Fragmentation/Summation/Containers/unittests/MPQCDataUnitTest.cpp \
    2931  ../Fragmentation/Summation/Containers/unittests/MPQCDataUnitTest.hpp
  • src/Fragmentation/Summation/Converter/Makefile.am

    r4c9101 ra91710  
    1010noinst_LTLIBRARIES += libMolecuilderFragmentationConverter.la
    1111libMolecuilderFragmentationConverter_la_includedir = $(includedir)/MoleCuilder/
    12 libMolecuilderFragmentationConverter_la_CPPFLAGS = ${BOOST_CPPFLAGS} ${CodePatterns_CFLAGS}
     12libMolecuilderFragmentationConverter_la_CPPFLAGS = $(AM_CPPFLAGS) ${BOOST_CPPFLAGS} ${CodePatterns_CFLAGS}
    1313libMolecuilderFragmentationConverter_la_LDFLAGS = -ldl ${BOOST_LDFLAGS}
    1414libMolecuilderFragmentationConverter_la_LIBADD = \
  • src/Fragmentation/Summation/Makefile.am

    r4c9101 ra91710  
    3434lib_LTLIBRARIES += libMolecuilderFragmentationSummation.la
    3535libMolecuilderFragmentationSummation_la_includedir = $(includedir)/MoleCuilder/
    36 libMolecuilderFragmentationSummation_la_CPPFLAGS = ${BOOST_CPPFLAGS} ${CodePatterns_CFLAGS}
     36libMolecuilderFragmentationSummation_la_CPPFLAGS = $(AM_CPPFLAGS) ${BOOST_CPPFLAGS} ${CodePatterns_CFLAGS}
    3737libMolecuilderFragmentationSummation_la_LDFLAGS = -ldl \
    3838        $(BOOST_SERIALIZATION_LDFLAGS) \
  • src/Fragmentation/Summation/SetValues/Makefile.am

    r4c9101 ra91710  
    2222noinst_LTLIBRARIES += libMolecuilderFragmentationSetValues.la
    2323libMolecuilderFragmentationSetValues_la_includedir = $(includedir)/MoleCuilder/
    24 libMolecuilderFragmentationSetValues_la_CPPFLAGS = ${BOOST_CPPFLAGS} ${CodePatterns_CFLAGS}
     24libMolecuilderFragmentationSetValues_la_CPPFLAGS = $(AM_CPPFLAGS) ${BOOST_CPPFLAGS} ${CodePatterns_CFLAGS}
    2525libMolecuilderFragmentationSetValues_la_LDFLAGS = -ldl ${BOOST_LDFLAGS}
    2626libMolecuilderFragmentationSetValues_la_LIBADD = \
  • src/Fragmentation/Summation/SetValues/unittests/Makefile.am

    r4c9101 ra91710  
    3131
    3232FRAGMENTATIONSETVALUESLIBS = \
     33        libUnitTest.la \
     34        ../libMolecuilder.la \
    3335        ../libMolecuilderFragmentationSetValues.la \
    3436        ${CodePatterns_LIBS} \
    3537        $(BOOST_LIB)
    3638
    37 EigenvaluesUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
     39EigenvaluesUnitTest_SOURCES = \
    3840        ../Fragmentation/Summation/SetValues/unittests/EigenvaluesUnitTest.cpp \
    3941        ../Fragmentation/Summation/SetValues/unittests/EigenvaluesUnitTest.hpp
     
    4244        $(BOOST_SERIALIZATION_LDFLAGS) $(BOOST_SERIALIZATION_LIBS)
    4345
    44 FragmentUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
     46FragmentUnitTest_SOURCES = \
    4547        ../Fragmentation/Summation/SetValues/unittests/FragmentUnitTest.cpp \
    4648        ../Fragmentation/Summation/SetValues/unittests/FragmentUnitTest.hpp
     
    4951        $(BOOST_SERIALIZATION_LDFLAGS) $(BOOST_SERIALIZATION_LIBS)
    5052
    51 HistogramUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
     53HistogramUnitTest_SOURCES = \
    5254        ../Fragmentation/Summation/SetValues/unittests/HistogramUnitTest.cpp \
    5355        ../Fragmentation/Summation/SetValues/unittests/HistogramUnitTest.hpp
    5456HistogramUnitTest_LDADD = ${FRAGMENTATIONSETVALUESLIBS}
    5557
    56 IndexedVectorsUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
     58IndexedVectorsUnitTest_SOURCES = \
    5759        ../Fragmentation/Summation/SetValues/unittests/IndexedVectorsUnitTest.cpp \
    5860        ../Fragmentation/Summation/SetValues/unittests/IndexedVectorsUnitTest.hpp
    5961IndexedVectorsUnitTest_LDADD = ${FRAGMENTATIONSETVALUESLIBS}
    6062
    61 SamplingGridPropertiesUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
     63SamplingGridPropertiesUnitTest_SOURCES = \
    6264        ../Fragmentation/Summation/SetValues/unittests/SamplingGridPropertiesUnitTest.cpp \
    6365        ../Fragmentation/Summation/SetValues/unittests/SamplingGridPropertiesUnitTest.hpp
    6466SamplingGridPropertiesUnitTest_LDADD = ${FRAGMENTATIONSETVALUESLIBS}
    6567
    66 SamplingGridUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
     68SamplingGridUnitTest_SOURCES = \
    6769        ../Fragmentation/Summation/SetValues/unittests/SamplingGridUnitTest.cpp \
    6870        ../Fragmentation/Summation/SetValues/unittests/SamplingGridUnitTest.hpp
  • src/Fragmentation/Summation/unittests/Makefile.am

    r4c9101 ra91710  
    3434
    3535FRAGMENTATIONSUMMATIONLIBS = \
     36        libUnitTest.la \
     37        ../libMolecuilder.la \
    3638        ../libMolecuilderFragmentationSummation.la \
    3739        ${CodePatterns_LIBS} \
     
    3941
    4042
    41 IndexSetUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
     43IndexSetUnitTest_SOURCES = \
    4244        ../Fragmentation/Summation/unittests/IndexSetUnitTest.cpp \
    4345        ../Fragmentation/Summation/unittests/IndexSetUnitTest.hpp
    4446IndexSetUnitTest_LDADD = ${FRAGMENTATIONSUMMATIONLIBS}
    4547
    46 IndexSetContainerUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
     48IndexSetContainerUnitTest_SOURCES = \
    4749        ../Fragmentation/Summation/unittests/IndexSetContainerUnitTest.cpp \
    4850        ../Fragmentation/Summation/unittests/IndexSetContainerUnitTest.hpp
     
    5355        ${FRAGMENTATIONSUMMATIONLIBS}
    5456
    55 OrthogonalSummationUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
     57OrthogonalSummationUnitTest_SOURCES = \
    5658        ../Fragmentation/Summation/unittests/OrthogonalSummationUnitTest.cpp \
    5759        ../Fragmentation/Summation/unittests/OrthogonalSummationUnitTest.hpp \
     
    6062OrthogonalSummationUnitTest_LDADD = ${FRAGMENTATIONSUMMATIONLIBS}
    6163
    62 SetValueUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
     64SetValueUnitTest_SOURCES = \
    6365        ../Fragmentation/Summation/unittests/SetValueUnitTest.cpp \
    6466        ../Fragmentation/Summation/unittests/SetValueUnitTest.hpp \
     
    6769SetValueUnitTest_LDADD = ${FRAGMENTATIONSUMMATIONLIBS}
    6870
    69 SetValueMapUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
     71SetValueMapUnitTest_SOURCES = \
    7072        ../Fragmentation/Summation/unittests/SetValueMapUnitTest.cpp \
    7173        ../Fragmentation/Summation/unittests/SetValueMapUnitTest.hpp
    7274SetValueMapUnitTest_LDADD = ${FRAGMENTATIONSUMMATIONLIBS}
    7375
    74 SubsetMapUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
     76SubsetMapUnitTest_SOURCES = \
    7577        ../Fragmentation/Summation/unittests/SubsetMapUnitTest.cpp \
    7678        ../Fragmentation/Summation/unittests/SubsetMapUnitTest.hpp
    7779SubsetMapUnitTest_LDADD = ${FRAGMENTATIONSUMMATIONLIBS}
    7880
    79 SummationUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
     81SummationUnitTest_SOURCES = \
    8082        ../Fragmentation/Summation/unittests/SummationUnitTest.cpp \
    8183        ../Fragmentation/Summation/unittests/SummationUnitTest.hpp \
  • src/Fragmentation/unittests/Makefile.am

    r4c9101 ra91710  
    1919
    2020FRAGMENTATIONLIBS = \
     21        libUnitTest.la \
     22        ../libMolecuilder.la \
    2123        ../libMolecuilderFragmentation.la \
    2224        ../libMolecuilderFragmentation_KeysetsContainer.la \
     
    2628
    2729
    28 KeySetsContainerUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
     30KeySetsContainerUnitTest_SOURCES = \
    2931        ../Fragmentation/unittests/KeySetsContainerUnitTest.cpp \
    3032        ../Fragmentation/unittests/KeySetsContainerUnitTest.hpp
    3133KeySetsContainerUnitTest_LDADD = ${FRAGMENTATIONLIBS}
    3234
    33 MatrixContainerUnitTest_SOURCES = $(top_srcdir)/src/unittests/UnitTestMain.cpp \
     35MatrixContainerUnitTest_SOURCES = \
    3436        ../Fragmentation/unittests/MatrixContainerUnitTest.cpp \
    3537        ../Fragmentation/unittests/MatrixContainerUnitTest.hpp
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