Changeset a2a2f7 for src/Tesselation
- Timestamp:
- Apr 29, 2014, 12:42:43 PM (11 years ago)
- Branches:
- Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable
- Children:
- ae68b5
- Parents:
- c9db50
- git-author:
- Frederik Heber <heber@…> (02/01/14 15:42:09)
- git-committer:
- Frederik Heber <heber@…> (04/29/14 12:42:43)
- Location:
- src/Tesselation
- Files:
-
- 3 edited
Legend:
- Unmodified
- Added
- Removed
-
src/Tesselation/boundary.cpp
rc9db50 ra2a2f7 1278 1278 // Center filler at origin 1279 1279 filler->CenterEdge(&Inserter); 1280 const int FillerCount = filler->getAtomCount();1280 // const int FillerCount = filler->getAtomCount(); 1281 1281 LOG(2, "INFO: Filler molecule has the following bonds:"); 1282 1282 for(molecule::iterator AtomRunner = filler->begin(); AtomRunner != filler->end(); ++AtomRunner) { … … 1290 1290 } 1291 1291 1292 atom * CopyAtoms[FillerCount];1292 // atom * CopyAtoms[FillerCount]; 1293 1293 1294 1294 setVerbosity(4); … … 1445 1445 CandidateForTesselation *baseline = NULL; 1446 1446 bool OneLoopWithoutSuccessFlag = true; // marks whether we went once through all baselines without finding any without two triangles 1447 bool TesselationFailFlag = false;1447 // bool TesselationFailFlag = false; 1448 1448 1449 1449 mol->getAtomCount(); … … 1486 1486 1487 1487 // 2b. find best candidate for each OpenLine 1488 TesselationFailFlag = TesselStruct->FindCandidatesforOpenLines(RADIUS, LCList); 1488 const bool TesselationFailFlag = TesselStruct->FindCandidatesforOpenLines(RADIUS, LCList); 1489 ASSERT( TesselationFailFlag, 1490 "FindNonConvexBorder() - at least one open line without candidate exists."); 1489 1491 1490 1492 // 2c. print OpenLines with candidates again -
src/Tesselation/tesselation.cpp
rc9db50 ra2a2f7 120 120 BoundaryTriangleSet *T = NULL; 121 121 bool OneLoopWithoutSuccessFlag = true; 122 bool TesselationFailFlag = false;123 122 while ((!OpenLines.empty()) && (OneLoopWithoutSuccessFlag)) { 124 123 // 2a. fill all new OpenLines … … 128 127 T = (((baseline->BaseLine->triangles.begin()))->second); 129 128 //the line is there, so there is a triangle, but only one. 130 TesselationFailFlag = FindNextSuitableTriangle(*baseline, *T, SPHERERADIUS, LinkedList); 129 const bool TesselationFailFlag = FindNextSuitableTriangle(*baseline, *T, SPHERERADIUS, LinkedList); 130 ASSERT( TesselationFailFlag, 131 "Tesselation::operator() - no suitable candidate triangle found."); 131 132 } 132 133 } … … 1399 1400 * @param N number of found triangles 1400 1401 * @param *LC LinkedCell_deprecated structure with neighbouring points 1402 * @return false - no suitable candidate found 1401 1403 */ 1402 1404 bool Tesselation::FindNextSuitableTriangle(CandidateForTesselation &CandidateLine, const BoundaryTriangleSet &T, const double& RADIUS, const LinkedCell_deprecated *LC) … … 3223 3225 list<TesselPointList *>::iterator ListAdvance = ListOfClosedPaths->begin(); 3224 3226 list<TesselPointList *>::iterator ListRunner = ListAdvance; 3225 TriangleMap::iterator NumberRunner = Candidates.begin();3227 // TriangleMap::iterator NumberRunner = Candidates.begin(); 3226 3228 TesselPointList::iterator StartNode, MiddleNode, EndNode; 3227 3229 double angle; … … 3637 3639 // check whether we have to fix lines 3638 3640 BoundaryTriangleSet *Othertriangle = NULL; 3639 BoundaryTriangleSet *OtherpartnerTriangle = NULL;3641 // BoundaryTriangleSet *OtherpartnerTriangle = NULL; 3640 3642 TriangleMap::iterator TriangleRunner; 3641 3643 for (int i = 0; i < 3; ++i) … … 3648 3650 } 3649 3651 for (TriangleRunner = partnerTriangle->lines[i]->triangles.begin(); TriangleRunner != partnerTriangle->lines[i]->triangles.end(); ++TriangleRunner) 3650 if (TriangleRunner->second != partnerTriangle) {3651 OtherpartnerTriangle = TriangleRunner->second;3652 }3652 // if (TriangleRunner->second != partnerTriangle) { 3653 // OtherpartnerTriangle = TriangleRunner->second; 3654 // } 3653 3655 /// interchanges their lines so that triangle->lines[i] == partnerTriangle->lines[j] 3654 3656 // the line of triangle receives the degenerated ones -
src/Tesselation/tesselationhelpers.cpp
rc9db50 ra2a2f7 430 430 TesselPoint* secondClosestPoint = NULL; 431 431 double distance = 1e16; 432 double secondDistance = 1e16;432 // double secondDistance = 1e16; 433 433 Vector helper; 434 434 int N[NDIM], Nlower[NDIM], Nupper[NDIM]; … … 451 451 if (currentNorm < distance) { 452 452 // remember second point 453 secondDistance = distance;453 // secondDistance = distance; 454 454 secondClosestPoint = closestPoint; 455 455 // mark down new closest point
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