Index: tests/Python/ForceAnnealing/post/five_carbon_test_bondgraph.data
===================================================================
--- tests/Python/ForceAnnealing/post/five_carbon_test_bondgraph.data	(revision 12d20cf5dd6b7ef9a2802026bd43468a0fa034e5)
+++ tests/Python/ForceAnnealing/post/five_carbon_test_bondgraph.data	(revision 7ef5d326665c47fb45b48aa371fd2f0e287e9e78)
@@ -13,115 +13,85 @@
 C	5	12.4	10	10	0	0	0	0	0	0	4	0	0	0	
 # ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	5.99762	10	10	0	0	0	-0.014002	0	0	2	0	0	0	
-C	2	7.55664	10	10	0	0	0	-0.208581	0	0	1	3	0	0	
-C	3	8.79358	10	10	0	0	0	0.445144	0	0	2	4	0	0	
-C	4	10.7566	10	10	0	0	0	-0.208538	0	0	3	5	0	0	
-C	5	12.3976	10	10	0	0	0	-0.0140232	0	0	4	0	0	0	
+C	1	5.97149	10	10	0	0	0	-0.014002	0	0	2	0	0	0	
+C	2	7.49973	10	10	0	0	0	-0.208581	0	0	1	3	0	0	
+C	3	8.95748	10	10	0	0	0	0.445144	0	0	2	4	0	0	
+C	4	10.6998	10	10	0	0	0	-0.208538	0	0	3	5	0	0	
+C	5	12.3715	10	10	0	0	0	-0.0140232	0	0	4	0	0	0	
 # ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	6.00099	10	10	0	0	0	-0.0216857	0	0	2	0	0	0	
-C	2	7.54962	10	10	0	0	0	-0.170437	0	0	1	3	0	0	
-C	3	8.88895	10	10	0	0	0	0.384225	0	0	2	4	0	0	
-C	4	10.7496	10	10	0	0	0	-0.170406	0	0	3	5	0	0	
-C	5	12.401	10	10	0	0	0	-0.0216963	0	0	4	0	0	0	
+C	1	5.93924	10	10	0	0	0	-0.0379738	0	0	2	0	0	0	
+C	2	7.49102	10	10	0	0	0	-0.0373017	0	0	1	3	0	0	
+C	3	9.03941	10	10	0	0	0	0.150588	0	0	2	4	0	0	
+C	4	10.6911	10	10	0	0	0	-0.0373705	0	0	3	5	0	0	
+C	5	12.3392	10	10	0	0	0	-0.037942	0	0	4	0	0	0	
 # ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	6.01638	10	10	0	0	0	-0.0271838	0	0	2	0	0	0	
-C	2	7.58211	10	10	0	0	0	-0.110757	0	0	1	3	0	0	
-C	3	9.04595	10	10	0	0	0	0.275871	0	0	2	4	0	0	
-C	4	10.7821	10	10	0	0	0	-0.11073	0	0	3	5	0	0	
-C	5	12.4164	10	10	0	0	0	-0.0271997	0	0	4	0	0	0	
+C	1	5.90802	10	10	0	0	0	-0.0255169	0	0	2	0	0	0	
+C	2	7.49975	10	10	0	0	0	-0.00179391	0	0	1	3	0	0	
+C	3	9.08428	10	10	0	0	0	0.054664	0	0	2	4	0	0	
+C	4	10.6998	10	10	0	0	0	-0.00189975	0	0	3	5	0	0	
+C	5	12.3082	10	10	0	0	0	-0.0254534	0	0	4	0	0	0	
 # ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	5.98362	10	10	0	0	0	-0.0181349	0	0	2	0	0	0	
-C	2	7.58977	10	10	0	0	0	-0.0539179	0	0	1	3	0	0	
-C	3	9.13561	10	10	0	0	0	0.1441	0	0	2	4	0	0	
-C	4	10.7898	10	10	0	0	0	-0.0538967	0	0	3	5	0	0	
-C	5	12.3835	10	10	0	0	0	-0.0181508	0	0	4	0	0	0	
+C	1	5.90803	10	10	0	0	0	-0.0043763	0	0	2	0	0	0	
+C	2	7.49176	10	10	0	0	0	-0.00381008	0	0	1	3	0	0	
+C	3	9.10147	10	10	0	0	0	0.0163992	0	0	2	4	0	0	
+C	4	10.6908	10	10	0	0	0	-0.00376774	0	0	3	5	0	0	
+C	5	12.3079	10	10	0	0	0	-0.00444509	0	0	4	0	0	0	
 # ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	5.98766	10	10	0	0	0	0.00325444	0	0	2	0	0	0	
-C	2	7.59245	10	10	0	0	0	-0.0319147	0	0	1	3	0	0	
-C	3	9.15835	10	10	0	0	0	0.0573364	0	0	2	4	0	0	
-C	4	10.7925	10	10	0	0	0	-0.0320099	0	0	3	5	0	0	
-C	5	12.3876	10	10	0	0	0	0.00333382	0	0	4	0	0	0	
+C	1	5.90707	10	10	0	0	0	-0.00860971	0	0	2	0	0	0	
+C	2	7.49521	10	10	0	0	0	0.013748	0	0	1	3	0	0	
+C	3	9.09579	10	10	0	0	0	-0.0107846	0	0	2	4	0	0	
+C	4	10.6951	10	10	0	0	0	0.0146953	0	0	3	5	0	0	
+C	5	12.3069	10	10	0	0	0	-0.00904893	0	0	4	0	0	0	
 # ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	5.98842	10	10	0	0	0	0.00253476	0	0	2	0	0	0	
-C	2	7.59255	10	10	0	0	0	-0.0205797	0	0	1	3	0	0	
-C	3	9.16535	10	10	0	0	0	0.0361163	0	0	2	4	0	0	
-C	4	10.7926	10	10	0	0	0	-0.0206644	0	0	3	5	0	0	
-C	5	12.3884	10	10	0	0	0	0.00259297	0	0	4	0	0	0	
+C	1	5.90506	10	10	0	0	0	-0.00627604	0	0	2	0	0	0	
+C	2	7.49716	10	10	0	0	0	0.00658296	0	0	1	3	0	0	
+C	3	9.09547	10	10	0	0	0	-0.000672055	0	0	2	4	0	0	
+C	4	10.6973	10	10	0	0	0	0.00660942	0	0	3	5	0	0	
+C	5	12.305	10	10	0	0	0	-0.00624429	0	0	4	0	0	0	
 # ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	5.99017	10	10	0	0	0	0.0021855	0	0	2	0	0	0	
-C	2	7.59433	10	10	0	0	0	-0.0165791	0	0	1	3	0	0	
-C	3	9.17263	10	10	0	0	0	0.0288137	0	0	2	4	0	0	
-C	4	10.7943	10	10	0	0	0	-0.0166426	0	0	3	5	0	0	
-C	5	12.3901	10	10	0	0	0	0.00222254	0	0	4	0	0	0	
+C	1	5.90296	10	10	0	0	0	-0.0041805	0	0	2	0	0	0	
+C	2	7.4988	10	10	0	0	0	0.00328619	0	0	1	3	0	0	
+C	3	9.09605	10	10	0	0	0	0.0018627	0	0	2	4	0	0	
+C	4	10.6989	10	10	0	0	0	0.00310627	0	0	3	5	0	0	
+C	5	12.3033	10	10	0	0	0	-0.00407466	0	0	4	0	0	0	
 # ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	5.99673	10	10	0	0	0	0.00220138	0	0	2	0	0	0	
-C	2	7.59359	10	10	0	0	0	-0.0136845	0	0	1	3	0	0	
-C	3	9.1839	10	10	0	0	0	0.0229504	0	0	2	4	0	0	
-C	4	10.7936	10	10	0	0	0	-0.0136898	0	0	3	5	0	0	
-C	5	12.3961	10	10	0	0	0	0.00222254	0	0	4	0	0	0	
+C	1	5.90167	10	10	0	0	0	-0.00220138	0	0	2	0	0	0	
+C	2	7.49933	10	10	0	0	0	0.00074614	0	0	1	3	0	0	
+C	3	9.0975	10	10	0	0	0	0.00296339	0	0	2	4	0	0	
+C	4	10.6996	10	10	0	0	0	0.000820225	0	0	3	5	0	0	
+C	5	12.302	10	10	0	0	0	-0.00232838	0	0	4	0	0	0	
 # ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	5.99607	10	10	0	0	0	-0.00166162	0	0	2	0	0	0	
-C	2	7.59504	10	10	0	0	0	-0.00346611	0	0	1	3	0	0	
-C	3	9.19027	10	10	0	0	0	0.0102607	0	0	2	4	0	0	
-C	4	10.7951	10	10	0	0	0	-0.00381008	0	0	3	5	0	0	
-C	5	12.3957	10	10	0	0	0	-0.00132294	0	0	4	0	0	0	
+C	1	5.90028	10	10	0	0	0	-0.00123827	0	0	2	0	0	0	
+C	2	7.49949	10	10	0	0	0	0.00026988	0	0	1	3	0	0	
+C	3	9.10006	10	10	0	0	0	0.00207967	0	0	2	4	0	0	
+C	4	10.6996	10	10	0	0	0	0.000158753	0	0	3	5	0	0	
+C	5	12.3006	10	10	0	0	0	-0.00127003	0	0	4	0	0	0	
 # ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	5.99616	10	10	0	0	0	-0.000545053	0	0	2	0	0	0	
-C	2	7.59523	10	10	0	0	0	-0.00197912	0	0	1	3	0	0	
-C	3	9.192	10	10	0	0	0	0.0050801	0	0	2	4	0	0	
-C	4	10.7952	10	10	0	0	0	-0.00223842	0	0	3	5	0	0	
-C	5	12.3959	10	10	0	0	0	-0.000317506	0	0	4	0	0	0	
+C	1	5.90018	10	10	0	0	0	-0.00041805	0	0	2	0	0	0	
+C	2	7.49988	10	10	0	0	0	0.000719681	0	0	1	3	0	0	
+C	3	9.09986	10	10	0	0	0	-0.000545053	0	0	2	4	0	0	
+C	4	10.6998	10	10	0	0	0	0.000772599	0	0	3	5	0	0	
+C	5	12.3003	10	10	0	0	0	-0.000529177	0	0	4	0	0	0	
 # ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	5.99623	10	10	0	0	0	-0.000492135	0	0	2	0	0	0	
-C	2	7.59535	10	10	0	0	0	-0.00121711	0	0	1	3	0	0	
-C	3	9.19284	10	10	0	0	0	0.00340261	0	0	2	4	0	0	
-C	4	10.7954	10	10	0	0	0	-0.00132294	0	0	3	5	0	0	
-C	5	12.3959	10	10	0	0	0	-0.000370424	0	0	4	0	0	0	
+C	1	5.90014	10	10	0	0	0	-0.000158753	0	0	2	0	0	0	
+C	2	7.49996	10	10	0	0	0	0.00014817	0	0	1	3	0	0	
+C	3	9.09987	10	10	0	0	0	-2.11671e-05	0	0	2	4	0	0	
+C	4	10.6999	10	10	0	0	0	0.000296339	0	0	3	5	0	0	
+C	5	12.3002	10	10	0	0	0	-0.000264589	0	0	4	0	0	0	
 # ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	5.99613	10	10	0	0	0	-0.000465676	0	0	2	0	0	0	
-C	2	7.59549	10	10	0	0	0	-0.000862559	0	0	1	3	0	0	
-C	3	9.19376	10	10	0	0	0	0.00268293	0	0	2	4	0	0	
-C	4	10.7955	10	10	0	0	0	-0.00109011	0	0	3	5	0	0	
-C	5	12.3959	10	10	0	0	0	-0.000264589	0	0	4	0	0	0	
+C	1	5.90011	10	10	0	0	0	-9.52519e-05	0	0	2	0	0	0	
+C	2	7.5	10	10	0	0	0	4.7626e-05	0	0	1	3	0	0	
+C	3	9.09989	10	10	0	0	0	6.35013e-05	0	0	2	4	0	0	
+C	4	10.7	10	10	0	0	0	0.000142878	0	0	3	5	0	0	
+C	5	12.3001	10	10	0	0	0	-0.000158753	0	0	4	0	0	0	
 # ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	5.99613	10	10	0	0	0	-0.000338673	0	0	2	0	0	0	
-C	2	7.59563	10	10	0	0	0	-0.000576803	0	0	1	3	0	0	
-C	3	9.19481	10	10	0	0	0	0.00183625	0	0	2	4	0	0	
-C	4	10.7956	10	10	0	0	0	-0.000709098	0	0	3	5	0	0	
-C	5	12.3959	10	10	0	0	0	-0.000211671	0	0	4	0	0	0	
+C	1	5.90008	10	10	0	0	0	-5.82095e-05	0	0	2	0	0	0	
+C	2	7.5	10	10	0	0	0	0	0	0	1	3	0	0	
+C	3	9.09993	10	10	0	0	0	0.000116419	0	0	2	4	0	0	
+C	4	10.7	10	10	0	0	0	-5.29177e-06	0	0	3	5	0	0	
+C	5	12.3	10	10	0	0	0	-5.29177e-05	0	0	4	0	0	0	
 # ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	5.99618	10	10	0	0	0	-0.000264589	0	0	2	0	0	0	
-C	2	7.59572	10	10	0	0	0	-0.000169337	0	0	1	3	0	0	
-C	3	9.1953	10	10	0	0	0	0.000851975	0	0	2	4	0	0	
-C	4	10.7957	10	10	0	0	0	-0.000259297	0	0	3	5	0	0	
-C	5	12.3959	10	10	0	0	0	-0.000158753	0	0	4	0	0	0	
-# ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	5.99613	10	10	0	0	0	-0.000243422	0	0	2	0	0	0	
-C	2	7.59576	10	10	0	0	0	2.11671e-05	0	0	1	3	0	0	
-C	3	9.19545	10	10	0	0	0	0.000433925	0	0	2	4	0	0	
-C	4	10.7957	10	10	0	0	0	-0.000105835	0	0	3	5	0	0	
-C	5	12.396	10	10	0	0	0	-0.000105835	0	0	4	0	0	0	
-# ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	5.99607	10	10	0	0	0	-0.000195796	0	0	2	0	0	0	
-C	2	7.59579	10	10	0	0	0	3.17506e-05	0	0	1	3	0	0	
-C	3	9.19554	10	10	0	0	0	0.000296339	0	0	2	4	0	0	
-C	4	10.7957	10	10	0	0	0	2.64589e-05	0	0	3	5	0	0	
-C	5	12.396	10	10	0	0	0	-0.000158753	0	0	4	0	0	0	
-# ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	5.99606	10	10	0	0	0	-0.00014817	0	0	2	0	0	0	
-C	2	7.59591	10	10	0	0	0	1.58753e-05	0	0	1	3	0	0	
-C	3	9.19566	10	10	0	0	0	0.000216963	0	0	2	4	0	0	
-C	4	10.7958	10	10	0	0	0	7.40848e-05	0	0	3	5	0	0	
-C	5	12.396	10	10	0	0	0	-0.000158753	0	0	4	0	0	0	
-# ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	5.99609	10	10	0	0	0	-7.93766e-05	0	0	2	0	0	0	
-C	2	7.59594	10	10	0	0	0	-5.29177e-05	0	0	1	3	0	0	
-C	3	9.19599	10	10	0	0	0	0.000206379	0	0	2	4	0	0	
-C	4	10.7961	10	10	0	0	0	3.17506e-05	0	0	3	5	0	0	
-C	5	12.3961	10	10	0	0	0	-0.000105835	0	0	4	0	0	0	
-# ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	5.99608	10	10	0	0	0	-7.93766e-05	0	0	2	0	0	0	
-C	2	7.59598	10	10	0	0	0	0.000105835	0	0	1	3	0	0	
-C	3	9.19602	10	10	0	0	0	3.17506e-05	0	0	2	4	0	0	
-C	4	10.796	10	10	0	0	0	-5.82095e-05	0	0	3	5	0	0	
-C	5	12.396	10	10	0	0	0	-2.71051e-21	0	0	4	0	0	0	
+C	1	5.90004	10	10	0	0	0	-4.23342e-05	0	0	2	0	0	0	
+C	2	7.50001	10	10	0	0	0	5.29177e-06	0	0	1	3	0	0	
+C	3	9.09999	10	10	0	0	0	7.40848e-05	0	0	2	4	0	0	
+C	4	10.6999	10	10	0	0	0	-3.70424e-05	0	0	3	5	0	0	
+C	5	12.3	10	10	0	0	0	1.35525e-21	0	0	4	0	0	0	
Index: tests/Python/ForceAnnealing/post/two_carbon_test_bondgraph.data
===================================================================
--- tests/Python/ForceAnnealing/post/two_carbon_test_bondgraph.data	(revision 12d20cf5dd6b7ef9a2802026bd43468a0fa034e5)
+++ tests/Python/ForceAnnealing/post/two_carbon_test_bondgraph.data	(revision 7ef5d326665c47fb45b48aa371fd2f0e287e9e78)
@@ -7,58 +7,7 @@
 C	2	8.72646	10	10	0	0	0	0.264589	0	0	1	0	0	0	
 # ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	7.54708	10	10	0	0	0	-0.236585	0	0	2	0	0	0	
-C	2	8.75292	10	10	0	0	0	0.236585	0	0	1	0	0	0	
+C	1	7.35001	10	10	0	0	0	-0.236585	0	0	2	0	0	0	
+C	2	8.94999	10	10	0	0	0	0.236585	0	0	1	0	0	0	
 # ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	7.44855	10	10	0	0	0	-0.208581	0	0	2	0	0	0	
-C	2	8.85145	10	10	0	0	0	0.208581	0	0	1	0	0	0	
-# ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	7.37085	10	10	0	0	0	-0.104301	0	0	2	0	0	0	
-C	2	8.92915	10	10	0	0	0	0.104301	0	0	1	0	0	0	
-# ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	7.36166	10	10	0	0	0	-0.0220667	0	0	2	0	0	0	
-C	2	8.93834	10	10	0	0	0	0.0220667	0	0	1	0	0	0	
-# ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	7.36043	10	10	0	0	0	-0.0123404	0	0	2	0	0	0	
-C	2	8.93957	10	10	0	0	0	0.0123404	0	0	1	0	0	0	
-# ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	7.35919	10	10	0	0	0	-0.0110386	0	0	2	0	0	0	
-C	2	8.94081	10	10	0	0	0	0.0110386	0	0	1	0	0	0	
-# ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	7.3546	10	10	0	0	0	-0.00972628	0	0	2	0	0	0	
-C	2	8.9454	10	10	0	0	0	0.00972628	0	0	1	0	0	0	
-# ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	7.35098	10	10	0	0	0	-0.00486843	0	0	2	0	0	0	
-C	2	8.94902	10	10	0	0	0	0.00486843	0	0	1	0	0	0	
-# ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	7.35054	10	10	0	0	0	-0.00103719	0	0	2	0	0	0	
-C	2	8.94946	10	10	0	0	0	0.00103719	0	0	1	0	0	0	
-# ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	7.35049	10	10	0	0	0	-0.000571511	0	0	2	0	0	0	
-C	2	8.94951	10	10	0	0	0	0.000571511	0	0	1	0	0	0	
-# ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	7.35043	10	10	0	0	0	-0.000518594	0	0	2	0	0	0	
-C	2	8.94957	10	10	0	0	0	0.000518594	0	0	1	0	0	0	
-# ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	7.3502	10	10	0	0	0	-0.000455092	0	0	2	0	0	0	
-C	2	8.9498	10	10	0	0	0	0.000455092	0	0	1	0	0	0	
-# ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	7.35005	10	10	0	0	0	-0.000211671	0	0	2	0	0	0	
-C	2	8.94995	10	10	0	0	0	0.000211671	0	0	1	0	0	0	
-# ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	7.35003	10	10	0	0	0	-5.29177e-05	0	0	2	0	0	0	
-C	2	8.94997	10	10	0	0	0	5.29177e-05	0	0	1	0	0	0	
-# ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	7.35002	10	10	0	0	0	-3.17506e-05	0	0	2	0	0	0	
-C	2	8.94998	10	10	0	0	0	3.17506e-05	0	0	1	0	0	0	
-# ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	7.35002	10	10	0	0	0	-2.11671e-05	0	0	2	0	0	0	
-C	2	8.94998	10	10	0	0	0	2.11671e-05	0	0	1	0	0	0	
-# ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	7.35002	10	10	0	0	0	-2.11671e-05	0	0	2	0	0	0	
-C	2	8.94998	10	10	0	0	0	2.11671e-05	0	0	1	0	0	0	
-# ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	7.35002	10	10	0	0	0	-2.11671e-05	0	0	2	0	0	0	
-C	2	8.94998	10	10	0	0	0	2.11671e-05	0	0	1	0	0	0	
-# ATOMDATA	type	Id	x=3	u=3	F=3	neighbors=4
-C	1	7.35002	10	10	0	0	0	-2.11671e-05	0	0	2	0	0	0	
-C	2	8.94998	10	10	0	0	0	2.11671e-05	0	0	1	0	0	0	
+C	1	7.35	10	10	0	0	0	-1.05835e-05	0	0	2	0	0	0	
+C	2	8.95	10	10	0	0	0	1.05835e-05	0	0	1	0	0	0	
Index: tests/Python/ForceAnnealing/testsuite-python-forceannealing-ising.at
===================================================================
--- tests/Python/ForceAnnealing/testsuite-python-forceannealing-ising.at	(revision 12d20cf5dd6b7ef9a2802026bd43468a0fa034e5)
+++ tests/Python/ForceAnnealing/testsuite-python-forceannealing-ising.at	(revision 7ef5d326665c47fb45b48aa371fd2f0e287e9e78)
@@ -48,5 +48,5 @@
 
 file=two_carbon_test.data
-AT_CHECK([../../run ${abs_top_srcdir}/tests/Python/ForceAnnealing/pre/ising_model_chain.py ./$file ./ 30 2 "1"], 0, [stdout], [ignore])
+AT_CHECK([../../run ${abs_top_srcdir}/tests/Python/ForceAnnealing/pre/ising_model_chain.py ./$file ./ 3 2 "1"], 0, [stdout], [ignore])
 AT_CHECK([grep "Largest remaining force components.*e-05" stdout], 0, [ignore], [ignore])
 AT_CHECK([diff $file ${abs_top_srcdir}/tests/Python/ForceAnnealing/post/two_carbon_test_bondgraph.data], 0, [ignore], [ignore])
@@ -60,6 +60,6 @@
 
 file=five_carbon_test.data
-AT_CHECK([../../run ${abs_top_srcdir}/tests/Python/ForceAnnealing/pre/ising_model_chain.py ./$file ./ 20 5 "1"], 0, [stdout], [ignore])
-AT_CHECK([grep "Largest remaining force components.*0.0001" stdout], 0, [ignore], [ignore])
+AT_CHECK([../../run ${abs_top_srcdir}/tests/Python/ForceAnnealing/pre/ising_model_chain.py ./$file ./ 15 5 "1"], 0, [stdout], [ignore])
+AT_CHECK([grep "Largest remaining force components.*e-05" stdout], 0, [ignore], [ignore])
 AT_CHECK([diff $file ${abs_top_srcdir}/tests/Python/ForceAnnealing/post/five_carbon_test_bondgraph.data], 0, [ignore], [ignore])
 
