- Timestamp:
- Aug 5, 2015, 5:32:10 PM (9 years ago)
- Branches:
- Action_Thermostats, Add_AtomRandomPerturbation, Add_FitFragmentPartialChargesAction, Add_RotateAroundBondAction, Add_SelectAtomByNameAction, Added_ParseSaveFragmentResults, AddingActions_SaveParseParticleParameters, Adding_Graph_to_ChangeBondActions, Adding_MD_integration_tests, Adding_ParticleName_to_Atom, Adding_StructOpt_integration_tests, AtomFragments, Automaking_mpqc_open, AutomationFragmentation_failures, Candidate_v1.5.4, Candidate_v1.6.0, Candidate_v1.6.1, ChangeBugEmailaddress, ChangingTestPorts, ChemicalSpaceEvaluator, CombiningParticlePotentialParsing, Combining_Subpackages, Debian_Package_split, Debian_package_split_molecuildergui_only, Disabling_MemDebug, Docu_Python_wait, EmpiricalPotential_contain_HomologyGraph, EmpiricalPotential_contain_HomologyGraph_documentation, Enable_parallel_make_install, Enhance_userguide, Enhanced_StructuralOptimization, Enhanced_StructuralOptimization_continued, Example_ManyWaysToTranslateAtom, Exclude_Hydrogens_annealWithBondGraph, FitPartialCharges_GlobalError, Fix_BoundInBox_CenterInBox_MoleculeActions, Fix_ChargeSampling_PBC, Fix_ChronosMutex, Fix_FitPartialCharges, Fix_FitPotential_needs_atomicnumbers, Fix_ForceAnnealing, Fix_IndependentFragmentGrids, Fix_ParseParticles, Fix_ParseParticles_split_forward_backward_Actions, Fix_PopActions, Fix_QtFragmentList_sorted_selection, Fix_Restrictedkeyset_FragmentMolecule, Fix_StatusMsg, Fix_StepWorldTime_single_argument, Fix_Verbose_Codepatterns, Fix_fitting_potentials, Fixes, ForceAnnealing_goodresults, ForceAnnealing_oldresults, ForceAnnealing_tocheck, ForceAnnealing_with_BondGraph, ForceAnnealing_with_BondGraph_continued, ForceAnnealing_with_BondGraph_continued_betteresults, ForceAnnealing_with_BondGraph_contraction-expansion, FragmentAction_writes_AtomFragments, FragmentMolecule_checks_bonddegrees, GeometryObjects, Gui_Fixes, Gui_displays_atomic_force_velocity, ImplicitCharges, IndependentFragmentGrids, IndependentFragmentGrids_IndividualZeroInstances, IndependentFragmentGrids_IntegrationTest, IndependentFragmentGrids_Sole_NN_Calculation, JobMarket_RobustOnKillsSegFaults, JobMarket_StableWorkerPool, JobMarket_unresolvable_hostname_fix, MoreRobust_FragmentAutomation, ODR_violation_mpqc_open, PartialCharges_OrthogonalSummation, PdbParser_setsAtomName, PythonUI_with_named_parameters, QtGui_reactivate_TimeChanged_changes, Recreated_GuiChecks, Rewrite_FitPartialCharges, RotateToPrincipalAxisSystem_UndoRedo, SaturateAtoms_findBestMatching, SaturateAtoms_singleDegree, StoppableMakroAction, Subpackage_CodePatterns, Subpackage_JobMarket, Subpackage_LinearAlgebra, Subpackage_levmar, Subpackage_mpqc_open, Subpackage_vmg, Switchable_LogView, ThirdParty_MPQC_rebuilt_buildsystem, TrajectoryDependenant_MaxOrder, TremoloParser_IncreasedPrecision, TremoloParser_MultipleTimesteps, TremoloParser_setsAtomName, Ubuntu_1604_changes, stable
- Children:
- 5be798
- Parents:
- fb95a5
- git-author:
- Frederik Heber <heber@…> (07/15/15 23:25:22)
- git-committer:
- Frederik Heber <heber@…> (08/05/15 17:32:10)
- Location:
- src
- Files:
-
- 5 edited
Legend:
- Unmodified
- Added
- Removed
-
src/Parser/FormatParser_common.cpp
rfb95a5 r54bdaa 96 96 switch (notification->getChannelNo()) { 97 97 case World::AtomInserted: 98 AtomInserted(World::getInstance().lastChanged <atom>()->getId());98 AtomInserted(World::getInstance().lastChangedAtomId()); 99 99 break; 100 100 case World::AtomRemoved: 101 AtomRemoved(World::getInstance().lastChanged <atom>()->getId());101 AtomRemoved(World::getInstance().lastChangedAtomId()); 102 102 break; 103 103 default: -
src/UIElements/Views/Qt4/MoleculeList/QtMoleculeList.cpp
rfb95a5 r54bdaa 196 196 case World::MoleculeInserted: 197 197 { 198 const molecule * const mol = World::getInstance().lastChanged<molecule>();199 198 boost::recursive_mutex::scoped_lock lock(listAccessing_mutex); 200 const moleculeId_t molid = mol->getId();199 const moleculeId_t molid = const_cast<const World &>(World::getInstance()).lastChangedMolId(); 201 200 if (molid != (unsigned int )-1) 202 201 newMolecules.push_back( molid ); … … 205 204 case World::MoleculeRemoved: 206 205 { 207 const molecule * const mol = World::getInstance().lastChanged<molecule>();208 209 206 boost::recursive_mutex::scoped_lock lock(listAccessing_mutex); 210 const moleculeId_t molid = mol->getId();207 const moleculeId_t molid = const_cast<const World &>(World::getInstance()).lastChangedMolId(); 211 208 if (molid != (unsigned int )-1) 212 209 removedMolecules.push_back( molid ); // remove in any case, as we also got insert -
src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_atom.cpp
rfb95a5 r54bdaa 273 273 atomId_t GLMoleculeObject_atom::updateIndex() const 274 274 { 275 const atom * const _atom = World::getInstance().lastChanged<atom>(); 276 if (_atom != NULL) { 277 return _atom->getId(); 278 } 279 return (atomId_t)-1; 275 return const_cast<const World &>(World::getInstance()).lastChangedAtomId(); 280 276 } 281 277 -
src/UIElements/Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp
rfb95a5 r54bdaa 429 429 { 430 430 const molecule * const mol = getMolecule(MolIndex.get()); 431 const atomId_t id = mol->lastChanged()->getId(); 432 if (mol->containsAtom(id)) 433 DisplayedAtoms.insert(id); 434 else 435 DisplayedAtoms.erase(id); 431 if (mol != NULL) { 432 const atomId_t id = mol->lastChangedAtomId(); 433 if (mol->containsAtom(id)) 434 DisplayedAtoms.insert(id); 435 else 436 DisplayedAtoms.erase(id); 437 } 436 438 return DisplayedAtoms; 437 439 } … … 439 441 moleculeId_t GLMoleculeObject_molecule::updateIndex() const 440 442 { 441 const molecule * const mol = World::getInstance().lastChanged<molecule>(); 442 if (mol != NULL) { 443 return mol->getId(); 444 } 445 return (moleculeId_t)-1; 443 return const_cast<const World &>(World::getInstance()).lastChangedMolId(); 446 444 } 447 445 … … 526 524 case molecule::AtomInserted: 527 525 { 528 const atomId_t _id = _molecule->lastChanged ()->getId();526 const atomId_t _id = _molecule->lastChangedAtomId(); 529 527 #ifdef LOG_OBSERVER 530 528 observerLog().addMessage() << "++ Observer " << observerLog().getName(static_cast<Observer *>(this)) << " received notification that atom "+toString(_id)+" has been inserted."; … … 537 535 case World::AtomRemoved: 538 536 { 539 const atomId_t _id = _molecule->lastChanged ()->getId();537 const atomId_t _id = _molecule->lastChangedAtomId(); 540 538 #ifdef LOG_OBSERVER 541 539 observerLog().addMessage() << "++ Observer " << observerLog().getName(static_cast<Observer *>(this)) << " received notification that atom "+toString(_id)+" has been removed."; … … 549 547 { 550 548 #ifdef LOG_OBSERVER 551 const atomId_t _id = _molecule->lastChanged ()->getId();549 const atomId_t _id = _molecule->lastChangedAtomId(); 552 550 observerLog().addMessage() << "++ Observer " << observerLog().getName(static_cast<Observer *>(this)) << " received notification that atom "+toString(_id)+" has been inserted."; 553 551 #endif … … 559 557 { 560 558 #ifdef LOG_OBSERVER 561 const atomId_t _id = _molecule->lastChanged ()->getId();559 const atomId_t _id = _molecule->lastChangedAtomId(); 562 560 observerLog().addMessage() << "++ Observer " << observerLog().getName(static_cast<Observer *>(this)) << " received notification that atom "+toString(_id)+"'s index has changed."; 563 561 #endif -
src/UIElements/Views/Qt4/Qt3D/GLWorldView.cpp
rfb95a5 r54bdaa 370 370 371 371 // emit removed signal 372 const moleculeId_t _id = World::getInstance().lastChanged<molecule>()->getId();372 const moleculeId_t _id = mol->getId(); 373 373 emit moleculeRemoved(_id); 374 374 } … … 394 394 case World::MoleculeInserted: 395 395 { 396 const moleculeId_t _id = World::getInstance().lastChanged<molecule>()->getId();396 const moleculeId_t _id = const_cast<const World &>(World::getInstance()).lastChangedMolId(); 397 397 #ifdef LOG_OBSERVER 398 398 observerLog().addMessage() << "++ Observer " << observerLog().getName(static_cast<Observer *>(this)) << " received notification that molecule "+toString(_id)+" has been inserted."; … … 428 428 } else if (dynamic_cast<molecule *>(publisher) != NULL) { 429 429 const molecule * mol = const_cast<const molecule * const>(dynamic_cast<molecule *>(publisher)); 430 const atomId_t atomid = mol->lastChanged()->getId();431 430 const moleculeId_t molid = mol->getId(); 431 const atomId_t atomid = mol->lastChangedAtomId(); 432 432 switch (notification->getChannelNo()) { 433 433 case molecule::AtomInserted:
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