Changes in src/Actions/FragmentationAction/FragmentationAction.cpp [623e89:35b698]

File:

• src/Actions/FragmentationAction/FragmentationAction.cpp (modified) (3 diffs)

src/Actions/FragmentationAction/FragmentationAction.cpp

@@ -6 +6 @@
  */
 
+#include "Helpers/MemDebug.hpp"
+
 #include "Actions/FragmentationAction/FragmentationAction.hpp"
 #include "atom.hpp"
+#include "bondgraph.hpp"
 #include "config.hpp"
 #include "log.hpp"
@@ -39 +42 @@
   double distance = -1.;
   int order = 0;
+  std::string path;
   config *configuration = World::getInstance().getConfig();
   int ExitFlag = 0;
 
   cout << "pre-dialog"<< endl;
-  dialog->queryMolecule(NAME, &mol, MapOfActions::getInstance().getDescription(NAME));
+  dialog->queryString(NAME, &path, MapOfActions::getInstance().getDescription(NAME));
+  dialog->queryMolecule("molecule-by-id", &mol, MapOfActions::getInstance().getDescription("molecule-by-id"));
   dialog->queryDouble("distance", &distance, MapOfActions::getInstance().getDescription("distance"));
   dialog->queryInt("order", &order, MapOfActions::getInstance().getDescription("order"));
@@ -56 +61 @@
     DoLog(0) && (Log() << Verbose(0) << "Fragmenting molecule with current connection matrix ..." << endl);
     if (mol->hasBondStructure()) {
-      ExitFlag = mol->FragmentMolecule(order, configuration);
+      ExitFlag = mol->FragmentMolecule(order, path);
     }
     World::getInstance().setExitFlag(ExitFlag);