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  • src/molecule.hpp

    r6cfa36 r274d45  
    9393
    9494  public:
    95     typedef std::set<atom*> atomSet;
     95    typedef std::list<atom*> atomSet;
     96    typedef std::set<atomId_t> atomIdSet;
    9697    typedef ObservedIterator<atomSet> iterator;
    9798    typedef atomSet::const_iterator const_iterator;
     
    121122    Cacheable<int>    AtomCount;
    122123    moleculeId_t id;
    123     atomSet atoms; //<!set of atoms
     124    atomSet atoms; //<!list of atoms
     125    atomIdSet atomIds; //<!set of atomic ids to check uniqueness of atoms
    124126  protected:
    125127    //void CountAtoms();
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