[8c574b] | 1 | AT_BANNER([MoleCuilder - Molecules])
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| 2 | # 1. Bonds from file
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| 3 | AT_SETUP([Molecules - Bonds from file])
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| 4 | AT_KEYWORDS([Molecules])
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| 5 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/${AUTOTEST_PATH}/Molecules/1/pre/test.* .], 0)
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| 6 | AT_CHECK([../../molecuilder test.conf -e ${abs_top_srcdir}/src/ -v 4 -A test.dbond], 0, [stdout], [stderr])
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| 7 | AT_CHECK([fgrep "Looking for atoms 2 and 9." stdout], 0, [ignore], [ignore])
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| 8 | AT_CLEANUP
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| 9 |
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| 10 | # 2. Storing adjacency info
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| 11 | AT_SETUP([Molecules - Storing bond info])
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| 12 | AT_KEYWORDS([Molecules])
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| 13 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/${AUTOTEST_PATH}/Molecules/2/pre/test.conf .], 0)
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| 14 | AT_CHECK([../../molecuilder test.conf -e ${abs_top_srcdir}/src/ -v 1 -j test.dbond], 0, [stdout], [stderr])
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| 15 | AT_CHECK([file=test.dbond; diff $file ${abs_top_srcdir}/${AUTOTEST_PATH}/Molecules/2/post/$file], 0, [ignore], [ignore])
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| 16 | AT_CHECK([../../molecuilder test.conf -e ${abs_top_srcdir}/src/ -v 1 -J test.adj], 0, [stdout], [stderr])
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| 17 | AT_CHECK([file=test.adj; diff $file ${abs_top_srcdir}/${AUTOTEST_PATH}/Molecules/2/post/$file], 0, [ignore], [ignore])
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| 18 | AT_CLEANUP
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| 19 |
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| 20 | # 3. Storing temperature
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| 21 | AT_SETUP([Molecules - Storing temperature])
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| 22 | AT_KEYWORDS([Molecules])
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| 23 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/${AUTOTEST_PATH}/Molecules/3/pre/test.conf .], 0)
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| 24 | AT_CHECK([../../molecuilder test.conf -e ${abs_top_srcdir}/src/ -S test.ekin], 0, [stdout], [stderr])
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| 25 | AT_CHECK([file=test.ekin; diff $file ${abs_top_srcdir}/${AUTOTEST_PATH}/Molecules/3/post/$file], 0, [ignore], [ignore])
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| 26 | AT_CLEANUP
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| 27 |
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| 28 | # 4. linear interpolation
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| 29 | AT_SETUP([Molecules - BROKEN: Linear interpolation])
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| 30 | AT_KEYWORDS([Molecules])
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| 31 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/${AUTOTEST_PATH}/Molecules/4/pre/test.conf .], 0)
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| 32 | AT_CHECK([../../molecuilder test.conf -e ${abs_top_srcdir}/src/ -L 0 1 teststep 1], 0, [stdout], [stderr])
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| 33 | AT_CLEANUP
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| 34 |
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| 35 | # 5. Verlet force integration
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| 36 | AT_SETUP([Molecules - BROKEN: Verlet force integration])
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| 37 | AT_KEYWORDS([Molecules])
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| 38 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/${AUTOTEST_PATH}/Molecules/5/pre/test.* .], 0)
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| 39 | AT_CHECK([../../molecuilder test.conf -e ${abs_top_srcdir}/src/ -P test.forces], 134, [stdout], [stderr])
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| 40 | #AT_CHECK([file=test.conf; diff $file ${abs_top_srcdir}/${AUTOTEST_PATH}/Molecules/5/post/$file], 0, [ignore], [ignore])
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| 41 | AT_CLEANUP
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| 42 |
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| 43 | # 6. Translation
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| 44 | AT_SETUP([Molecules - Translation])
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| 45 | AT_KEYWORDS([Molecules])
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| 46 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/${AUTOTEST_PATH}/Molecules/6/pre/test.* .], 0)
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| 47 | AT_CHECK([../../molecuilder test.conf -e ${abs_top_srcdir}/src/ -t 1. 1. 1.], 0, [stdout], [stderr])
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| 48 | AT_CHECK([file=test.conf; diff $file ${abs_top_srcdir}/${AUTOTEST_PATH}/Molecules/6/post/$file], 0, [ignore], [ignore])
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| 49 | AT_CLEANUP
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| 50 |
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| 51 | # 7. Periodic translation
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| 52 | AT_SETUP([Molecules - Periodic translation])
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| 53 | AT_KEYWORDS([Molecules])
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| 54 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/${AUTOTEST_PATH}/Molecules/7/pre/test.* .], 0)
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| 55 | AT_CHECK([../../molecuilder test.conf -e ${abs_top_srcdir}/src/ -T 12. 12. 12.], 0, [stdout], [stderr])
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| 56 | AT_CHECK([file=test.conf; diff $file ${abs_top_srcdir}/${AUTOTEST_PATH}/Molecules/7/post/$file], 0, [ignore], [ignore])
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| 57 | AT_CLEANUP
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| 58 |
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| 59 | # 8. Periodic translation
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| 60 | AT_SETUP([Molecules - BROKEN: Rotate to PAS])
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| 61 | AT_KEYWORDS([Molecules])
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| 62 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/${AUTOTEST_PATH}/Molecules/8/pre/test.* .], 0)
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| 63 | AT_CHECK([../../molecuilder test.conf -e ${abs_top_srcdir}/src/ -m 1], 0, [stdout], [stderr])
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| 64 | #AT_CHECK([file=test.conf; diff $file ${abs_top_srcdir}/${AUTOTEST_PATH}/Molecules/8/post/$file], 0, [ignore], [ignore])
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| 65 | AT_CLEANUP
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| 66 |
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