| 1 | AT_BANNER([MoleCuilder - Filling in molecules]) | 
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| 2 | # 1. filling box | 
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| 3 | AT_SETUP([Filling - filling box around molecule's surface]) | 
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| 4 | AT_KEYWORDS([filling]) | 
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| 5 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/${AUTOTEST_PATH}/Filling/1/pre/test.conf .], 0) | 
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| 6 | AT_DATA([water.xyz], [[3 | 
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| 7 | # test configuration, created by molecuilder test suite | 
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| 8 | O       0.      0.      0. | 
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| 9 | H       0.758602 0.     0.504284 | 
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| 10 | H       0.758602 0.     -0.504284 | 
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| 11 | ]]) | 
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| 12 | AT_CHECK([../../molecuilder -i test.conf -e ${abs_top_srcdir}/src/ -v 3 -F water.xyz --MaxDistance -1 --distances "3.1, 3.1, 3.1"  --lengths "2.1, 0., 0." --DoRotate 0], 0, [stdout], [stderr]) | 
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| 13 | AT_CHECK([file=test.conf; diff $file ${abs_top_srcdir}/${AUTOTEST_PATH}/Filling/1/post/$file], 0, [ignore], [ignore]) | 
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| 14 | AT_CLEANUP | 
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| 15 |  | 
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| 16 | # 2. suspend in water with certain density | 
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| 17 | AT_SETUP([Filling - BROKEN: suspend in water]) | 
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| 18 | AT_KEYWORDS([filling]) | 
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| 19 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/${AUTOTEST_PATH}/Filling/2/pre/test.conf .], 0) | 
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| 20 | AT_CHECK([../../molecuilder -i test.conf -e ${abs_top_srcdir}/src/ -v 3 --select-molecule-by-id 0 -u 1.3], 0, [stdout], [stderr]) | 
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| 21 | #AT_CHECK([file=test.conf; diff $file ${abs_top_srcdir}/${AUTOTEST_PATH}/Filling/2/post/$file], 0, [ignore], [ignore]) | 
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| 22 | AT_CLEANUP | 
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| 23 |  | 
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| 24 | # 3. filling box | 
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| 25 | AT_SETUP([Filling - filling void space in box]) | 
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| 26 | AT_KEYWORDS([filling]) | 
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| 27 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/${AUTOTEST_PATH}/Filling/3/pre/test.conf .], 0) | 
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| 28 | AT_DATA([water.xyz], [[3 | 
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| 29 | # test configuration, created by molecuilder test suite | 
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| 30 | O       0.      0.      0. | 
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| 31 | H       0.758602 0.     0.504284 | 
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| 32 | H       0.758602 0.     -0.504284 | 
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| 33 | ]]) | 
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| 34 | AT_CHECK([../../molecuilder -i test.conf -e ${abs_top_srcdir}/src/ -o xyz --fill-void water.xyz --distances "3.1, 3.1, 3.1"  --lengths "2.1, 0., 0." --DoRotate 0], 0, [stdout], [stderr]) | 
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| 35 | AT_CHECK([file=test.xyz; diff -I '.*reated by molecuilder.*' $file ${abs_top_srcdir}/${AUTOTEST_PATH}/Filling/3/post/$file], 0, [ignore], [ignore]) | 
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| 36 | AT_CLEANUP | 
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| 37 |  | 
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| 38 | AT_SETUP([Filling - filling void space besides tenside micelle in box]) | 
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| 39 | AT_KEYWORDS([filling]) | 
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| 40 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/${AUTOTEST_PATH}/Filling/3/pre/*.data .], 0) | 
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| 41 | AT_CHECK([../../molecuilder -i tensid.data -e ${abs_top_srcdir}/src/ -B "30,0,30,0,0,30" --fill-void water.data --distances "3.1, 3.1, 3.1"  --lengths "2.1, 0., 0." --DoRotate 0], 0, [stdout], [stderr]) | 
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| 42 | AT_CHECK([file=tensid.data; diff $file ${abs_top_srcdir}/${AUTOTEST_PATH}/Filling/3/post/$file], 0, [ignore], [ignore]) | 
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| 43 | AT_CLEANUP | 
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