[512f85] | 1 | ### 5. (un)select atoms by element
|
---|
| 2 |
|
---|
| 3 | # select element by atomic number: 1, 4
|
---|
| 4 | AT_SETUP([Selection - All atoms with specific element by atomic number])
|
---|
| 5 | AT_KEYWORDS([selection,atom,element,atomic number])
|
---|
[23b0c2] | 6 |
|
---|
| 7 | file=test-H_missing.xyz
|
---|
| 8 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/${AUTOTEST_PATH}/Selection/Atoms/AtomByElement/pre/test.xyz $file], 0)
|
---|
| 9 | AT_CHECK([chmod u+w $file], 0)
|
---|
| 10 | AT_CHECK([../../molecuilder -i $file -v 3 --select-atom-by-element 1 -r], 0, [stdout], [stderr])
|
---|
| 11 | AT_CHECK([diff -I '.*Created by molecuilder.*' $file ${abs_top_srcdir}/${AUTOTEST_PATH}/Selection/Atoms/AtomByElement/post/test-H_missing.xyz], 0, [ignore], [ignore])
|
---|
| 12 |
|
---|
| 13 | file=test-Be_missing.xyz
|
---|
| 14 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/${AUTOTEST_PATH}/Selection/Atoms/AtomByElement/pre/test.xyz $file], 0)
|
---|
| 15 | AT_CHECK([chmod u+w $file], 0)
|
---|
| 16 | AT_CHECK([../../molecuilder -i $file -v 3 --select-atom-by-element 4 -r], 0, [stdout], [stderr])
|
---|
| 17 | AT_CHECK([diff -I '.*Created by molecuilder.*' $file ${abs_top_srcdir}/${AUTOTEST_PATH}/Selection/Atoms/AtomByElement/post/test-Be_missing.xyz], 0, [ignore], [ignore])
|
---|
| 18 |
|
---|
[512f85] | 19 | AT_CLEANUP
|
---|
| 20 |
|
---|
[23b0c2] | 21 |
|
---|
[e69c87] | 22 | AT_SETUP([Selection - All atoms with specific element by symbol with Undo])
|
---|
[512f85] | 23 | AT_KEYWORDS([element,symbol])
|
---|
[23b0c2] | 24 |
|
---|
| 25 | file=test.xyz
|
---|
| 26 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/${AUTOTEST_PATH}/Selection/Atoms/AtomByElement/pre/test.xyz $file], 0)
|
---|
| 27 | AT_CHECK([chmod u+w $file], 0)
|
---|
| 28 | AT_CHECK([../../molecuilder -i $file -v 3 --select-atom-by-element 1 --undo -r], 0, [stdout], [stderr])
|
---|
| 29 | AT_CHECK([diff -I '.*Created by molecuilder.*' $file ${abs_top_srcdir}/${AUTOTEST_PATH}/Selection/Atoms/AtomByElement/post/test.xyz], 0, [ignore], [ignore])
|
---|
| 30 |
|
---|
| 31 | file=test.xyz
|
---|
[b9bfa6] | 32 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/${AUTOTEST_PATH}/Selection/Atoms/AtomByElement/pre/test.xyz test.xyz], 0)
|
---|
[23b0c2] | 33 | AT_CHECK([chmod u+w $file], 0)
|
---|
| 34 | AT_CHECK([../../molecuilder -i $file -v 3 --select-atom-by-element 4 --undo -r], 0, [stdout], [stderr])
|
---|
| 35 | AT_CHECK([diff -I '.*Created by molecuilder.*' $file ${abs_top_srcdir}/${AUTOTEST_PATH}/Selection/Atoms/AtomByElement/post/test.xyz], 0, [ignore], [ignore])
|
---|
| 36 |
|
---|
[e69c87] | 37 | AT_CLEANUP
|
---|
| 38 |
|
---|
| 39 | AT_SETUP([Selection - All atoms with specific element by symbol with Redo])
|
---|
| 40 | AT_KEYWORDS([element,symbol])
|
---|
| 41 |
|
---|
[23b0c2] | 42 | file=test-H_missing.xyz
|
---|
[b9bfa6] | 43 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/${AUTOTEST_PATH}/Selection/Atoms/AtomByElement/pre/test.xyz test-H_missing.xyz], 0)
|
---|
[23b0c2] | 44 | AT_CHECK([chmod u+w $file], 0)
|
---|
| 45 | AT_CHECK([../../molecuilder -i $file -v 3 --select-atom-by-element 1 --undo --redo -r], 0, [stdout], [stderr])
|
---|
| 46 | AT_CHECK([diff -I '.*Created by molecuilder.*' $file ${abs_top_srcdir}/${AUTOTEST_PATH}/Selection/Atoms/AtomByElement/post/test-H_missing.xyz], 0, [ignore], [ignore])
|
---|
| 47 |
|
---|
| 48 | file=test-Be_missing.xyz
|
---|
[b9bfa6] | 49 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/${AUTOTEST_PATH}/Selection/Atoms/AtomByElement/pre/test.xyz test-Be_missing.xyz], 0)
|
---|
[23b0c2] | 50 | AT_CHECK([chmod u+w $file], 0)
|
---|
| 51 | AT_CHECK([../../molecuilder -i $file -v 3 --select-atom-by-element 4 --undo --redo -r], 0, [stdout], [stderr])
|
---|
| 52 | AT_CHECK([diff -I '.*Created by molecuilder.*' $file ${abs_top_srcdir}/${AUTOTEST_PATH}/Selection/Atoms/AtomByElement/post/test-Be_missing.xyz], 0, [ignore], [ignore])
|
---|
| 53 |
|
---|
[512f85] | 54 | AT_CLEANUP |
---|