| 1 | ### parsing pdb
|
|---|
| 2 |
|
|---|
| 3 | AT_SETUP([Parser - loading empty pdb file])
|
|---|
| 4 | AT_KEYWORDS([parser,pdb,emptyfile])
|
|---|
| 5 | AT_CHECK([echo "" >test.pdb], 0, [ignore], [ignore])
|
|---|
| 6 | AT_CHECK([../../molecuilder -i test.pdb -o pdb], 0, [ignore], [ignore])
|
|---|
| 7 | AT_CLEANUP
|
|---|
| 8 |
|
|---|
| 9 | AT_SETUP([Parser - loading pdb file])
|
|---|
| 10 | AT_KEYWORDS([parser,pdb])
|
|---|
| 11 | AT_CHECK([../../molecuilder -i test.pdb -o pdb -l ${abs_top_srcdir}/${AUTOTEST_PATH}/Parser/Pdb/pre/test.pdb], 0, [ignore], [ignore])
|
|---|
| 12 | AT_CHECK([file=test.pdb; diff -I '.*created by molecuilder.*' $file ${abs_top_srcdir}/${AUTOTEST_PATH}/Parser/Pdb/post/$file], 0, [ignore], [ignore])
|
|---|
| 13 | AT_CLEANUP
|
|---|
| 14 |
|
|---|
| 15 | AT_SETUP([Parser - loading pdb file with CONECTs])
|
|---|
| 16 | AT_KEYWORDS([parser,pdb])
|
|---|
| 17 | AT_CHECK([../../molecuilder -i test_conect.pdb -o pdb -l ${abs_top_srcdir}/${AUTOTEST_PATH}/Parser/Pdb/pre/test_conect.pdb], 0, [ignore], [ignore])
|
|---|
| 18 | AT_CHECK([file=test_conect.pdb; diff -I '.*created by molecuilder.*' $file ${abs_top_srcdir}/${AUTOTEST_PATH}/Parser/Pdb/post/$file], 0, [ignore], [ignore])
|
|---|
| 19 | AT_CLEANUP
|
|---|
| 20 |
|
|---|
| 21 | AT_SETUP([Parser - loading pdb file with multiple time steps])
|
|---|
| 22 | AT_KEYWORDS([parser,pdb])
|
|---|
| 23 | AT_CHECK([../../molecuilder -v 4 -i testmulti.pdb -o pdb -l ${abs_top_srcdir}/${AUTOTEST_PATH}/Parser/Pdb/pre/testmulti.pdb], 0, [ignore], [ignore])
|
|---|
| 24 | AT_CHECK([file=testmulti.pdb; diff -I '.*created by molecuilder.*' $file ${abs_top_srcdir}/${AUTOTEST_PATH}/Parser/Pdb/post/$file], 0, [ignore], [ignore])
|
|---|
| 25 | AT_CHECK([../../molecuilder -v 4 -i testmulti2.pdb -o pdb -l ${abs_top_srcdir}/${AUTOTEST_PATH}/Parser/Pdb/pre/testmulti2.pdb], 0, [ignore], [ignore])
|
|---|
| 26 | AT_CHECK([file=testmulti2.pdb; diff -I '.*created by molecuilder.*' $file ${abs_top_srcdir}/${AUTOTEST_PATH}/Parser/Pdb/post/$file], 0, [ignore], [ignore])
|
|---|
| 27 | AT_CLEANUP
|
|---|
| 28 |
|
|---|
| 29 | AT_SETUP([Parser - saving pdb file])
|
|---|
| 30 | AT_KEYWORDS([parser,pdb])
|
|---|
| 31 | AT_CHECK([../../molecuilder -i test.pdb -o pdb -l ${abs_top_srcdir}/${AUTOTEST_PATH}/Parser/Pdb/pre/test.pdb --output store.pdb], 0, [ignore], [ignore])
|
|---|
| 32 | AT_CHECK([diff -I '.*created by molecuilder.*' store.pdb ${abs_top_srcdir}/${AUTOTEST_PATH}/Parser/Pdb/post/test.pdb], 0, [ignore], [ignore])
|
|---|
| 33 | AT_CLEANUP
|
|---|
| 34 |
|
|---|