source: tests/regression/Molecules/Remove/pre/water_box.pdb@ 3b74fa

Action_Thermostats Adding_Graph_to_ChangeBondActions Adding_MD_integration_tests Adding_StructOpt_integration_tests AutomationFragmentation_failures Candidate_v1.6.1 ChemicalSpaceEvaluator Enhanced_StructuralOptimization Enhanced_StructuralOptimization_continued Exclude_Hydrogens_annealWithBondGraph Fix_Verbose_Codepatterns ForceAnnealing_with_BondGraph ForceAnnealing_with_BondGraph_continued ForceAnnealing_with_BondGraph_continued_betteresults ForceAnnealing_with_BondGraph_contraction-expansion Gui_displays_atomic_force_velocity JobMarket_RobustOnKillsSegFaults JobMarket_StableWorkerPool PythonUI_with_named_parameters Recreated_GuiChecks StoppableMakroAction TremoloParser_IncreasedPrecision
Last change on this file since 3b74fa was 867473, checked in by Frederik Heber <heber@…>, 10 years ago

Added new RemoveAction for molecules.

  • also add regression test.
  • added remove-molecule to userguide.
  • Property mode set to 100644
File size: 3.9 KB
Line 
1REMARK created by molecuilder on Mon Dec 8 20:36:58 2014, time step 0
2ATOM 1 O01 0non 01 1.590 2.000 2.000 0.00 0.00 O 0
3ATOM 2 H01 0non 01 2.205 2.000 2.774 0.00 0.00 H 0
4ATOM 3 H02 0non 01 2.205 2.000 1.226 0.00 0.00 H 0
5ATOM 4 O01 0non 02 1.590 2.000 6.000 0.00 0.00 O 0
6ATOM 5 H01 0non 02 2.205 2.000 6.774 0.00 0.00 H 0
7ATOM 6 H02 0non 02 2.205 2.000 5.226 0.00 0.00 H 0
8ATOM 7 O01 0non 03 1.590 6.000 2.000 0.00 0.00 O 0
9ATOM 8 H01 0non 03 2.205 6.000 2.774 0.00 0.00 H 0
10ATOM 9 H02 0non 03 2.205 6.000 1.226 0.00 0.00 H 0
11ATOM 10 O01 0non 04 1.590 6.000 6.000 0.00 0.00 O 0
12ATOM 11 H01 0non 04 2.205 6.000 6.774 0.00 0.00 H 0
13ATOM 12 H02 0non 04 2.205 6.000 5.226 0.00 0.00 H 0
14ATOM 13 O01 0non 05 5.590 2.000 2.000 0.00 0.00 O 0
15ATOM 14 H01 0non 05 6.205 2.000 2.774 0.00 0.00 H 0
16ATOM 15 H02 0non 05 6.205 2.000 1.226 0.00 0.00 H 0
17ATOM 16 O01 0non 06 5.590 2.000 6.000 0.00 0.00 O 0
18ATOM 17 H01 0non 06 6.205 2.000 6.774 0.00 0.00 H 0
19ATOM 18 H02 0non 06 6.205 2.000 5.226 0.00 0.00 H 0
20ATOM 19 O01 0non 07 5.590 6.000 2.000 0.00 0.00 O 0
21ATOM 20 H01 0non 07 6.205 6.000 2.774 0.00 0.00 H 0
22ATOM 21 H02 0non 07 6.205 6.000 1.226 0.00 0.00 H 0
23ATOM 22 O01 0non 08 5.590 6.000 6.000 0.00 0.00 O 0
24ATOM 23 H01 0non 08 6.205 6.000 6.774 0.00 0.00 H 0
25ATOM 24 H02 0non 08 6.205 6.000 5.226 0.00 0.00 H 0
26CONECT 1 3 2
27CONECT 2 1
28CONECT 3 1
29CONECT 4 6 5
30CONECT 5 4
31CONECT 6 4
32CONECT 7 9 8
33CONECT 8 7
34CONECT 9 7
35CONECT 10 12 11
36CONECT 11 10
37CONECT 12 10
38CONECT 13 15 14
39CONECT 14 13
40CONECT 15 13
41CONECT 16 18 17
42CONECT 17 16
43CONECT 18 16
44CONECT 19 21 20
45CONECT 20 19
46CONECT 21 19
47CONECT 22 24 23
48CONECT 23 22
49CONECT 24 22
50END
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