1 | ### Subgraph dissection with specific boundary conditions
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2 |
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3 | AT_SETUP([Graph - subgraph dissection with Wrap BC])
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4 | AT_KEYWORDS([graph subgraph-dissection set-boundary-conditions])
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5 | AT_XFAIL_IF([/bin/true])
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6 |
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7 | file=water.xyz
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8 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0)
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9 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
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10 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions "Wrap, Wrap, Wrap" -v 3 -I], 0, [stdout], [stderr])
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11 | AT_CHECK([fgrep "I scanned 1 molecules." stdout], 0, [ignore], [ignore])
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12 | file=water-bounced.xyz
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13 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0)
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14 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
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15 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions "Wrap, Wrap, Wrap" -v 3 -I], 0, [stdout], [stderr])
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16 | AT_CHECK([fgrep "I scanned 1 molecules." stdout], 0, [ignore], [ignore])
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17 | file=water-wrapped.xyz
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18 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0)
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19 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
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20 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions "Wrap, Wrap, Wrap" -v 3 -I], 0, [stdout], [stderr])
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21 | AT_CHECK([fgrep "I scanned 1 molecules." stdout], 0, [ignore], [ignore])
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22 |
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23 | AT_CLEANUP
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24 |
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25 | AT_SETUP([Graph - subgraph dissection with Bounce BC])
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26 | AT_KEYWORDS([graph subgraph-dissection set-boundary-conditions])
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27 | AT_XFAIL_IF([/bin/false])
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28 |
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29 | file=water.xyz
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30 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0)
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31 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
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32 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions "Bounce, Bounce, Bounce" -v 3 -I], 0, [stdout], [stderr])
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33 | AT_CHECK([fgrep "I scanned 1 molecules." stdout], 0, [ignore], [ignore])
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34 | file=water-bounced.xyz
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35 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0)
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36 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
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37 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions "Bounce, Bounce, Bounce" -v 3 -I], 0, [stdout], [stderr])
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38 | AT_CHECK([fgrep "I scanned 1 molecules." stdout], 0, [ignore], [ignore])
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39 | file=water-wrapped.xyz
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40 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0)
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41 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
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42 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions "Bounce, Bounce, Bounce" -v 3 -I], 0, [stdout], [stderr])
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43 | AT_CHECK([fgrep "I scanned 2 molecules." stdout], 0, [ignore], [ignore])
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44 |
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45 | AT_CLEANUP
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46 |
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47 | AT_SETUP([Graph - subgraph dissection with Ignore BC])
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48 | AT_KEYWORDS([graph subgraph-dissection set-boundary-conditions])
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49 |
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50 | file=water.xyz
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51 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0)
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52 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
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53 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions "Ignore, Ignore, Ignore" -v 3 -I], 0, [stdout], [stderr])
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54 | AT_CHECK([fgrep "I scanned 1 molecules." stdout], 0, [ignore], [ignore])
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55 | file=water-bounced.xyz
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56 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0)
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57 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
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58 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions "Ignore, Ignore, Ignore" -v 3 -I], 0, [stdout], [stderr])
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59 | AT_CHECK([fgrep "I scanned 1 molecules." stdout], 0, [ignore], [ignore])
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60 | file=water-wrapped.xyz
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61 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0)
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62 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
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63 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions "Ignore, Ignore, Ignore" -v 3 -I], 0, [stdout], [stderr])
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64 | AT_CHECK([fgrep "I scanned 2 molecules." stdout], 0, [ignore], [ignore])
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65 |
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66 | AT_CLEANUP
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67 |
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