| [c52e08] | 1 | ### Subgraph dissection with specific boundary conditions
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 | 2 | 
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 | 3 | AT_SETUP([Graph - subgraph dissection with Wrap BC])
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 | 4 | AT_KEYWORDS([graph subgraph-dissection set-boundary-conditions])
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 | 5 | 
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 | 6 | file=water.xyz
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 | 7 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0)
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 | 8 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
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| [97f9b9] | 9 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions Wrap Wrap Wrap -v 3 -I], 0, [stdout], [stderr])
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| [c52e08] | 10 | AT_CHECK([fgrep "I scanned 1 molecules." stdout], 0, [ignore], [ignore])
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 | 11 | file=water-bounced.xyz
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 | 12 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0)
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 | 13 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
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| [97f9b9] | 14 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions Wrap Wrap Wrap -v 3 -I], 0, [stdout], [stderr])
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| [c52e08] | 15 | AT_CHECK([fgrep "I scanned 1 molecules." stdout], 0, [ignore], [ignore])
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 | 16 | file=water-wrapped.xyz
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 | 17 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0)
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 | 18 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
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| [97f9b9] | 19 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions Wrap Wrap Wrap -v 3 -I], 0, [stdout], [stderr])
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| [c52e08] | 20 | AT_CHECK([fgrep "I scanned 1 molecules." stdout], 0, [ignore], [ignore])
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 | 21 | 
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 | 22 | AT_CLEANUP
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 | 23 | 
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 | 24 | AT_SETUP([Graph - subgraph dissection with Bounce BC])
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 | 25 | AT_KEYWORDS([graph subgraph-dissection set-boundary-conditions])
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 | 26 | 
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 | 27 | file=water.xyz
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 | 28 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0)
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 | 29 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
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| [97f9b9] | 30 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions Bounce Bounce Bounce -v 3 -I], 0, [stdout], [stderr])
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| [c52e08] | 31 | AT_CHECK([fgrep "I scanned 1 molecules." stdout], 0, [ignore], [ignore])
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 | 32 | file=water-bounced.xyz
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 | 33 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0)
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 | 34 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
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| [97f9b9] | 35 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions Bounce Bounce Bounce -v 3 -I], 0, [stdout], [stderr])
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| [c52e08] | 36 | AT_CHECK([fgrep "I scanned 1 molecules." stdout], 0, [ignore], [ignore])
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 | 37 | file=water-wrapped.xyz
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 | 38 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0)
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 | 39 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
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| [97f9b9] | 40 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions Bounce Bounce Bounce -v 3 -I], 0, [stdout], [stderr])
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| [c52e08] | 41 | AT_CHECK([fgrep "I scanned 2 molecules." stdout], 0, [ignore], [ignore])
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 | 42 | 
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 | 43 | AT_CLEANUP
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 | 44 | 
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 | 45 | AT_SETUP([Graph - subgraph dissection with Ignore BC])
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 | 46 | AT_KEYWORDS([graph subgraph-dissection set-boundary-conditions])
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 | 47 | 
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 | 48 | file=water.xyz
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 | 49 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0)
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 | 50 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
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| [97f9b9] | 51 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions Ignore Ignore Ignore -v 3 -I], 0, [stdout], [stderr])
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| [c52e08] | 52 | AT_CHECK([fgrep "I scanned 1 molecules." stdout], 0, [ignore], [ignore])
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 | 53 | file=water-bounced.xyz
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 | 54 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0)
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 | 55 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
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| [97f9b9] | 56 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions Ignore Ignore Ignore -v 3 -I], 0, [stdout], [stderr])
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| [c52e08] | 57 | AT_CHECK([fgrep "I scanned 1 molecules." stdout], 0, [ignore], [ignore])
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 | 58 | file=water-wrapped.xyz
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 | 59 | AT_CHECK([/bin/cp -f ${abs_top_srcdir}/tests/regression/Graph/SubgraphDissection-BoundaryConditions/pre/$file $file], 0)
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 | 60 | AT_CHECK([chmod u+w $file], 0, [ignore], [ignore])
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| [97f9b9] | 61 | AT_CHECK([../../molecuilder -i $file -B "5,0,5,0,0,5" --set-boundary-conditions Ignore Ignore Ignore -v 3 -I], 0, [stdout], [stderr])
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| [c52e08] | 62 | AT_CHECK([fgrep "I scanned 2 molecules." stdout], 0, [ignore], [ignore])
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 | 63 | 
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 | 64 | AT_CLEANUP
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 | 65 | 
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